RNA–Protein interactions for RNA: YDL085W

NDE2, Transcript of Mitochondrial external NADH dehydrogenase, yeastyeast

Gene NDE2, Length 1,638 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NDE2YDL085W SGS1P35187 1447 aa13.64□□□□□ -0.23
NDE2YDL085W INO80P53115 1489 aa13.42□□□□□ -0.26
NDE2YDL085W SPA2P23201 1466 aaKnown RBP13.19□□□□□ -0.3
NDE2YDL085W TCB3Q03640 1545 aaKnown RBP13.17□□□□□ -0.3
NDE2YDL085W SSN2P38931 1420 aa13.06□□□□□ -0.32
NDE2YDL085W TY1B-DR4Q07793 1604 aa12.92□□□□□ -0.34
NDE2YDL085W DRS1P32892 752 aaKnown RBP12.76□□□□□ -0.37
NDE2YDL085W MON2P48563 1636 aaPredicted RBP12.75□□□□□ -0.37
NDE2YDL085W HSL1P34244 1518 aa12.69□□□□□ -0.38
NDE2YDL085W SPT6P23615 1451 aaKnown RBP12.67□□□□□ -0.38
NDE2YDL085W SWR1Q05471 1514 aa12.55□□□□□ -0.4
NDE2YDL085W HIR3P47171 1648 aa12.48□□□□□ -0.41
NDE2YDL085W XRN1P22147 1528 aaKnown RBP12.42□□□□□ -0.42
NDE2YDL085W REV3P14284 1504 aa12.25□□□□□ -0.45
NDE2YDL085W THO2P53552 1597 aaKnown RBP12.25□□□□□ -0.45
NDE2YDL085W SIN3P22579 1536 aa12.23□□□□□ -0.45
NDE2YDL085W KOG1P38873 1557 aa12.18□□□□□ -0.46
NDE2YDL085W SSK2P53599 1579 aa12.13□□□□□ -0.47
NDE2YDL085W DNA2P38859 1522 aa12.12□□□□□ -0.47
NDE2YDL085W MYO2P19524 1574 aaKnown RBP12.06□□□□□ -0.48
NDE2YDL085W TAF2P23255 1407 aa12.05□□□□□ -0.48
NDE2YDL085W BUD4P47136 1447 aa12.04□□□□□ -0.48
NDE2YDL085W ESP1Q03018 1630 aa12.02□□□□□ -0.48
NDE2YDL085W ECM5Q03214 1411 aa11.95□□□□□ -0.5
NDE2YDL085W CHD1P32657 1468 aa11.91□□□□□ -0.5
NDE2YDL085W ATG2P53855 1592 aa11.91□□□□□ -0.5
NDE2YDL085W SKI3P17883 1432 aaKnown RBP11.89□□□□□ -0.51
NDE2YDL085W YPK9Q12697 1472 aa11.87□□□□□ -0.51
NDE2YDL085W POL1P13382 1468 aa11.86□□□□□ -0.51
NDE2YDL085W YTA7P40340 1379 aa11.82□□□□□ -0.52
NDE2YDL085W MMS22Q06164 1454 aa11.79□□□□□ -0.52
NDE2YDL085W PEP1P32319 1579 aa11.78□□□□□ -0.52
NDE2YDL085W MDS3P53094 1487 aa11.77□□□□□ -0.52
NDE2YDL085W STU1P38198 1513 aa11.77□□□□□ -0.53
NDE2YDL085W SCC2Q04002 1493 aa11.71□□□□□ -0.54
NDE2YDL085W RKR1Q04781 1562 aa11.69□□□□□ -0.54
NDE2YDL085W RPO31P04051 1460 aa11.68□□□□□ -0.54
NDE2YDL085W YOR1P53049 1477 aa11.67□□□□□ -0.54
NDE2YDL085W TOP2P06786 1428 aaKnown RBP11.64□□□□□ -0.55
NDE2YDL085W MYO4P32492 1471 aa11.63□□□□□ -0.55
NDE2YDL085W SMC4Q12267 1418 aa11.62□□□□□ -0.55
NDE2YDL085W UFD4P33202 1483 aa11.59□□□□□ -0.55
NDE2YDL085W TAF7Q05021 590 aa11.59□□□□□ -0.55
NDE2YDL085W BPT1P14772 1559 aa11.57□□□□□ -0.56
NDE2YDL085W SAS10Q12136 610 aaPredicted RBP11.57□□□□□ -0.56
NDE2YDL085W YCF1P39109 1515 aaKnown RBP11.57□□□□□ -0.56
NDE2YDL085W TY2B-LR1P0C2J3 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-FP0CX63 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-GR2P0CX64 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-CP25384 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-DR2Q03494 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY1B-DR1Q03855 1755 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-DR3Q07791 1770 aaKnown RBP11.47□□□□□ -0.57
NDE2YDL085W TY2B-OR1Q12113 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-DR1Q12472 1770 aa11.47□□□□□ -0.57
NDE2YDL085W TY2B-OR2Q12501 1770 aa11.47□□□□□ -0.57
NDE2YDL085W STH1P32597 1359 aa11.43□□□□□ -0.58
NDE2YDL085W TY1B-DR3Q99231 1755 aa11.43□□□□□ -0.58
NDE2YDL085W SNQ2P32568 1501 aaKnown RBP11.42□□□□□ -0.58
NDE2YDL085W TY2B-BQ12491 1770 aa11.38□□□□□ -0.59
NDE2YDL085W IKI3Q06706 1349 aaKnown RBP11.36□□□□□ -0.59
NDE2YDL085W SPP41P38904 1435 aa11.36□□□□□ -0.59
NDE2YDL085W TRM732Q03496 1420 aa11.34□□□□□ -0.59
NDE2YDL085W MLP2P40457 1679 aa11.34□□□□□ -0.59
NDE2YDL085W RQC2Q12532 1038 aaKnown RBP11.32□□□□□ -0.6
NDE2YDL085W TY1B-HO13535 1793 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-DR5P0C2I2 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-DR6P0C2I3 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-LR2P0C2I5 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-LR3P0C2I6 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-PR1P0C2I9 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-PR2P0C2J0 1756 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-PR3P0C2J1 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-JR1P47098 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-ML2Q03434 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-ER1Q03612 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-ML1Q04711 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-GR2Q12269 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-OLQ12273 1755 aa11.31□□□□□ -0.6
NDE2YDL085W TY1B-PLQ12414 1755 aaKnown RBP11.31□□□□□ -0.6
NDE2YDL085W TY1B-BRQ12193 1756 aa11.29□□□□□ -0.6
NDE2YDL085W TY1B-GR3Q12316 1755 aa11.29□□□□□ -0.6
NDE2YDL085W TY1B-ORQ92393 1755 aa11.29□□□□□ -0.6
NDE2YDL085W CDC25P04821 1589 aa11.28□□□□□ -0.6
NDE2YDL085W PDR15Q04182 1529 aaKnown RBP11.28□□□□□ -0.6
NDE2YDL085W TSC11P40061 1430 aa11.27□□□□□ -0.6
NDE2YDL085W PAN1P32521 1480 aa11.25□□□□□ -0.61
NDE2YDL085W VTH1P40438 1549 aa11.25□□□□□ -0.61
NDE2YDL085W VTH2P40890 1549 aa11.25□□□□□ -0.61
NDE2YDL085W GEA1P47102 1408 aaPredicted RBP11.25□□□□□ -0.61
NDE2YDL085W IFH1P39520 1085 aa11.24□□□□□ -0.61
NDE2YDL085W NUP170P38181 1502 aa11.2□□□□□ -0.62
NDE2YDL085W ULS1Q08562 1619 aa11.2□□□□□ -0.62
NDE2YDL085W SNT2P53127 1403 aa11.18□□□□□ -0.62
NDE2YDL085W RSE1Q04693 1361 aaKnown RBP11.18□□□□□ -0.62
NDE2YDL085W RTT106P40161 455 aa11.14□□□□□ -0.63
NDE2YDL085W TY1B-JR2P47100 1755 aaKnown RBP11.13□□□□□ -0.63
NDE2YDL085W TY1B-ER2Q03619 1755 aa11.13□□□□□ -0.63
NDE2YDL085W TY1B-MR1Q04214 1755 aa11.13□□□□□ -0.63
NDE2YDL085W TY1B-MR2Q04670 1755 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms