RNA–Protein interactions for RNA: YBR217W

ATG12, Transcript of Ubiquitin-like modifier involved in autophagy and the Cvt pathway, yeast

Gene ATG12, Length 561 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG12	YBR217W	INO80	P53115	1489 aa		11.48	□□□□□ -0.57
ATG12	YBR217W	MON2	P48563	1636 aa	Predicted RBP	11.47	□□□□□ -0.57
ATG12	YBR217W	SGS1	P35187	1447 aa		11.15	□□□□□ -0.62
ATG12	YBR217W	TCB3	Q03640	1545 aa	Known RBP	11.09	□□□□□ -0.63
ATG12	YBR217W	TY1B-DR4	Q07793	1604 aa		11.06	□□□□□ -0.64
ATG12	YBR217W	SWR1	Q05471	1514 aa		11.04	□□□□□ -0.64
ATG12	YBR217W	DNA2	P38859	1522 aa		10.95	□□□□□ -0.66
ATG12	YBR217W	KOG1	P38873	1557 aa		10.8	□□□□□ -0.68
ATG12	YBR217W	HSL1	P34244	1518 aa		10.72	□□□□□ -0.69
ATG12	YBR217W	SPT6	P23615	1451 aa	Known RBP	10.71	□□□□□ -0.69
ATG12	YBR217W	SPA2	P23201	1466 aa	Known RBP	10.61	□□□□□ -0.71
ATG12	YBR217W	HIR3	P47171	1648 aa		10.51	□□□□□ -0.73
ATG12	YBR217W	RSE1	Q04693	1361 aa	Known RBP	10.4	□□□□□ -0.74
ATG12	YBR217W	ECM5	Q03214	1411 aa		10.4	□□□□□ -0.75
ATG12	YBR217W	SSN2	P38931	1420 aa		10.38	□□□□□ -0.75
ATG12	YBR217W	XRN1	P22147	1528 aa	Known RBP	10.37	□□□□□ -0.75
ATG12	YBR217W	THO2	P53552	1597 aa	Known RBP	10.31	□□□□□ -0.76
ATG12	YBR217W	BUD4	P47136	1447 aa		10.31	□□□□□ -0.76
ATG12	YBR217W	MDS3	P53094	1487 aa		10.18	□□□□□ -0.78
ATG12	YBR217W	REV3	P14284	1504 aa		10.17	□□□□□ -0.78
ATG12	YBR217W	PEP1	P32319	1579 aa		10.14	□□□□□ -0.79
ATG12	YBR217W	ATG2	P53855	1592 aa		10.12	□□□□□ -0.79
ATG12	YBR217W	TAF2	P23255	1407 aa		10.11	□□□□□ -0.79
ATG12	YBR217W	DRS1	P32892	752 aa	Known RBP	10.07	□□□□□ -0.8
ATG12	YBR217W	MTC1	P47018	478 aa	Known RBP	10.05	□□□□□ -0.8
ATG12	YBR217W	SIN3	P22579	1536 aa		10.04	□□□□□ -0.8
ATG12	YBR217W	SKI3	P17883	1432 aa	Known RBP	10.02	□□□□□ -0.81
ATG12	YBR217W	SSK2	P53599	1579 aa		9.98	□□□□□ -0.81
ATG12	YBR217W	ESP1	Q03018	1630 aa		9.96	□□□□□ -0.82
ATG12	YBR217W	BPT1	P14772	1559 aa		9.93	□□□□□ -0.82
ATG12	YBR217W	MYO2	P19524	1574 aa	Known RBP	9.8	□□□□□ -0.84
ATG12	YBR217W	UFD4	P33202	1483 aa		9.8	□□□□□ -0.84
ATG12	YBR217W	YPK9	Q12697	1472 aa		9.79	□□□□□ -0.84
ATG12	YBR217W	SCC2	Q04002	1493 aa		9.78	□□□□□ -0.84
ATG12	YBR217W	YCF1	P39109	1515 aa	Known RBP	9.74	□□□□□ -0.85
ATG12	YBR217W	RPO31	P04051	1460 aa		9.71	□□□□□ -0.86
ATG12	YBR217W	TY2B-LR1	P0C2J3	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-F	P0CX63	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-GR2	P0CX64	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-C	P25384	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-DR2	Q03494	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY1B-DR1	Q03855	1755 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-DR3	Q07791	1770 aa	Known RBP	9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-OR1	Q12113	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-DR1	Q12472	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	TY2B-OR2	Q12501	1770 aa		9.7	□□□□□ -0.86
ATG12	YBR217W	RQC2	Q12532	1038 aa	Known RBP	9.63	□□□□□ -0.87
ATG12	YBR217W	TY1B-BR	Q12193	1756 aa		9.63	□□□□□ -0.87
ATG12	YBR217W	TY1B-GR3	Q12316	1755 aa		9.63	□□□□□ -0.87
ATG12	YBR217W	TY1B-OR	Q92393	1755 aa		9.63	□□□□□ -0.87
ATG12	YBR217W	CDC25	P04821	1589 aa		9.6	□□□□□ -0.87
ATG12	YBR217W	CHD1	P32657	1468 aa		9.59	□□□□□ -0.87
ATG12	YBR217W	RKR1	Q04781	1562 aa		9.58	□□□□□ -0.88
ATG12	YBR217W	TOP2	P06786	1428 aa	Known RBP	9.58	□□□□□ -0.88
ATG12	YBR217W	TY2B-B	Q12491	1770 aa		9.58	□□□□□ -0.88
ATG12	YBR217W	ESC1	Q03661	1658 aa	Known RBP	9.58	□□□□□ -0.88
ATG12	YBR217W	TY1B-DR3	Q99231	1755 aa		9.58	□□□□□ -0.88
ATG12	YBR217W	FAP1	P53971	965 aa		9.57	□□□□□ -0.88
ATG12	YBR217W	POL1	P13382	1468 aa		9.56	□□□□□ -0.88
ATG12	YBR217W	TY1B-H	O13535	1793 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-DR5	P0C2I2	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-DR6	P0C2I3	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-LR2	P0C2I5	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-PR2	P0C2J0	1756 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-JR1	P47098	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-ML2	Q03434	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-ER1	Q03612	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-ML1	Q04711	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-GR2	Q12269	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-OL	Q12273	1755 aa		9.55	□□□□□ -0.88
ATG12	YBR217W	TY1B-PL	Q12414	1755 aa	Known RBP	9.55	□□□□□ -0.88
ATG12	YBR217W	DNF1	P32660	1571 aa		9.54	□□□□□ -0.88
ATG12	YBR217W	PAN1	P32521	1480 aa		9.53	□□□□□ -0.88
ATG12	YBR217W	STU1	P38198	1513 aa		9.52	□□□□□ -0.88
ATG12	YBR217W	YOR1	P53049	1477 aa		9.47	□□□□□ -0.89
ATG12	YBR217W	MMS22	Q06164	1454 aa		9.47	□□□□□ -0.89
ATG12	YBR217W	RPA190	P10964	1664 aa	Known RBP	9.47	□□□□□ -0.89
ATG12	YBR217W	SMC4	Q12267	1418 aa		9.45	□□□□□ -0.9
ATG12	YBR217W	MET5	P47169	1442 aa		9.43	□□□□□ -0.9
ATG12	YBR217W	SPP41	P38904	1435 aa		9.39	□□□□□ -0.91
ATG12	YBR217W	TRM732	Q03496	1420 aa		9.38	□□□□□ -0.91
ATG12	YBR217W	TY1B-JR2	P47100	1755 aa	Known RBP	9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-ER2	Q03619	1755 aa		9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-MR1	Q04214	1755 aa		9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-MR2	Q04670	1755 aa	Known RBP	9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-LR1	Q12088	1755 aa	Known RBP	9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-NL1	Q12112	1755 aa		9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-GR1	Q12141	1755 aa		9.37	□□□□□ -0.91
ATG12	YBR217W	TY1B-BL	Q12490	1755 aa		9.37	□□□□□ -0.91
ATG12	YBR217W	YTA7	P40340	1379 aa		9.32	□□□□□ -0.92
ATG12	YBR217W	TSC11	P40061	1430 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	YRF1-1	P0CX20	1796 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	YRF1-5	P0CX21	1796 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	YRF1-8	P0CX22	1796 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	VTH1	P40438	1549 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	VTH2	P40890	1549 aa		9.31	□□□□□ -0.92
ATG12	YBR217W	NUP159	P40477	1460 aa		9.28	□□□□□ -0.92

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms