RNA–Protein interactions for RNA: YBL006C

LDB7, Transcript of Component of the RSC chromatin remodeling complex, yeastyeast

Gene LDB7, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LDB7YBL006C MON2P48563 1636 aaPredicted RBP14.66□□□□□ -0.06
LDB7YBL006C INO80P53115 1489 aa14.49□□□□□ -0.09
LDB7YBL006C SWR1Q05471 1514 aa13.96□□□□□ -0.17
LDB7YBL006C TY1B-DR4Q07793 1604 aa13.93□□□□□ -0.18
LDB7YBL006C TCB3Q03640 1545 aaKnown RBP13.91□□□□□ -0.18
LDB7YBL006C DNA2P38859 1522 aa13.88□□□□□ -0.19
LDB7YBL006C KOG1P38873 1557 aa13.71□□□□□ -0.21
LDB7YBL006C SGS1P35187 1447 aa13.69□□□□□ -0.22
LDB7YBL006C HSL1P34244 1518 aa13.44□□□□□ -0.26
LDB7YBL006C SPT6P23615 1451 aaKnown RBP13.38□□□□□ -0.27
LDB7YBL006C SPA2P23201 1466 aaKnown RBP13.21□□□□□ -0.3
LDB7YBL006C RSE1Q04693 1361 aaKnown RBP13.2□□□□□ -0.3
LDB7YBL006C HIR3P47171 1648 aa13.13□□□□□ -0.31
LDB7YBL006C THO2P53552 1597 aaKnown RBP13.01□□□□□ -0.33
LDB7YBL006C ECM5Q03214 1411 aa12.99□□□□□ -0.33
LDB7YBL006C BUD4P47136 1447 aa12.96□□□□□ -0.33
LDB7YBL006C MDS3P53094 1487 aa12.86□□□□□ -0.35
LDB7YBL006C XRN1P22147 1528 aaKnown RBP12.86□□□□□ -0.35
LDB7YBL006C PEP1P32319 1579 aa12.77□□□□□ -0.37
LDB7YBL006C ATG2P53855 1592 aa12.71□□□□□ -0.37
LDB7YBL006C SSN2P38931 1420 aa12.7□□□□□ -0.38
LDB7YBL006C REV3P14284 1504 aa12.67□□□□□ -0.38
LDB7YBL006C SIN3P22579 1536 aa12.57□□□□□ -0.4
LDB7YBL006C MTC1P47018 478 aaKnown RBP12.52□□□□□ -0.41
LDB7YBL006C BPT1P14772 1559 aa12.48□□□□□ -0.41
LDB7YBL006C SSK2P53599 1579 aa12.45□□□□□ -0.42
LDB7YBL006C TAF2P23255 1407 aa12.41□□□□□ -0.42
LDB7YBL006C SKI3P17883 1432 aaKnown RBP12.39□□□□□ -0.43
LDB7YBL006C ESP1Q03018 1630 aa12.37□□□□□ -0.43
LDB7YBL006C YCF1P39109 1515 aaKnown RBP12.29□□□□□ -0.44
LDB7YBL006C UFD4P33202 1483 aa12.21□□□□□ -0.46
LDB7YBL006C MYO2P19524 1574 aaKnown RBP12.2□□□□□ -0.46
LDB7YBL006C SCC2Q04002 1493 aa12.2□□□□□ -0.46
LDB7YBL006C YPK9Q12697 1472 aa12.2□□□□□ -0.46
LDB7YBL006C DRS1P32892 752 aaKnown RBP12.12□□□□□ -0.47
LDB7YBL006C RPO31P04051 1460 aa12.1□□□□□ -0.47
LDB7YBL006C TY2B-LR1P0C2J3 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-FP0CX63 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-GR2P0CX64 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-CP25384 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-DR2Q03494 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY1B-DR1Q03855 1755 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-DR3Q07791 1770 aaKnown RBP12.08□□□□□ -0.48
LDB7YBL006C TY2B-OR1Q12113 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-DR1Q12472 1770 aa12.08□□□□□ -0.48
LDB7YBL006C TY2B-OR2Q12501 1770 aa12.08□□□□□ -0.48
LDB7YBL006C CDC25P04821 1589 aa12.05□□□□□ -0.48
LDB7YBL006C TY1B-BRQ12193 1756 aa12.02□□□□□ -0.49
LDB7YBL006C TY1B-GR3Q12316 1755 aa12.02□□□□□ -0.49
LDB7YBL006C TY1B-ORQ92393 1755 aa12.02□□□□□ -0.49
LDB7YBL006C CHD1P32657 1468 aa12.01□□□□□ -0.49
LDB7YBL006C ESC1Q03661 1658 aaKnown RBP12□□□□□ -0.49
LDB7YBL006C DNF1P32660 1571 aa11.99□□□□□ -0.49
LDB7YBL006C TY2B-BQ12491 1770 aa11.93□□□□□ -0.5
LDB7YBL006C TY1B-HO13535 1793 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-DR5P0C2I2 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-DR6P0C2I3 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-LR2P0C2I5 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-LR3P0C2I6 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-PR1P0C2I9 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-PR2P0C2J0 1756 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-PR3P0C2J1 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-JR1P47098 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-ML2Q03434 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-ER1Q03612 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-ML1Q04711 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-GR2Q12269 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-OLQ12273 1755 aa11.92□□□□□ -0.5
LDB7YBL006C TY1B-PLQ12414 1755 aaKnown RBP11.92□□□□□ -0.5
LDB7YBL006C TY1B-DR3Q99231 1755 aa11.91□□□□□ -0.5
LDB7YBL006C MET5P47169 1442 aa11.9□□□□□ -0.5
LDB7YBL006C TOP2P06786 1428 aaKnown RBP11.89□□□□□ -0.51
LDB7YBL006C RPA190P10964 1664 aaKnown RBP11.89□□□□□ -0.51
LDB7YBL006C PAN1P32521 1480 aa11.89□□□□□ -0.51
LDB7YBL006C RKR1Q04781 1562 aa11.88□□□□□ -0.51
LDB7YBL006C POL1P13382 1468 aa11.83□□□□□ -0.52
LDB7YBL006C MMS22Q06164 1454 aa11.77□□□□□ -0.52
LDB7YBL006C RQC2Q12532 1038 aaKnown RBP11.77□□□□□ -0.53
LDB7YBL006C LTE1P07866 1435 aa11.77□□□□□ -0.53
LDB7YBL006C YOR1P53049 1477 aa11.73□□□□□ -0.53
LDB7YBL006C SMC4Q12267 1418 aa11.7□□□□□ -0.54
LDB7YBL006C BNI1P41832 1953 aa11.7□□□□□ -0.54
LDB7YBL006C STU1P38198 1513 aa11.7□□□□□ -0.54
LDB7YBL006C TRM732Q03496 1420 aa11.68□□□□□ -0.54
LDB7YBL006C TY1B-JR2P47100 1755 aaKnown RBP11.67□□□□□ -0.54
LDB7YBL006C TY1B-ER2Q03619 1755 aa11.67□□□□□ -0.54
LDB7YBL006C TY1B-MR1Q04214 1755 aa11.67□□□□□ -0.54
LDB7YBL006C TY1B-MR2Q04670 1755 aaKnown RBP11.67□□□□□ -0.54
LDB7YBL006C TY1B-LR1Q12088 1755 aaKnown RBP11.67□□□□□ -0.54
LDB7YBL006C TY1B-NL1Q12112 1755 aa11.67□□□□□ -0.54
LDB7YBL006C TY1B-GR1Q12141 1755 aa11.67□□□□□ -0.54
LDB7YBL006C TY1B-BLQ12490 1755 aa11.67□□□□□ -0.54
LDB7YBL006C NTE1Q04958 1679 aa11.65□□□□□ -0.54
LDB7YBL006C YRF1-1P0CX20 1796 aa11.65□□□□□ -0.54
LDB7YBL006C YRF1-5P0CX21 1796 aa11.65□□□□□ -0.54
LDB7YBL006C YRF1-8P0CX22 1796 aa11.65□□□□□ -0.54
LDB7YBL006C GEA2P39993 1459 aaKnown RBP11.64□□□□□ -0.55
LDB7YBL006C SPP41P38904 1435 aa11.64□□□□□ -0.55
LDB7YBL006C NUP159P40477 1460 aa11.59□□□□□ -0.55
LDB7YBL006C VTH1P40438 1549 aa11.59□□□□□ -0.55
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms