RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 SGS1P35187 1447 aa15.2■□□□□ 0.02
LSR1LSR1 INO80P53115 1489 aa14.86□□□□□ -0.03
LSR1LSR1 SPA2P23201 1466 aaKnown RBP14.82□□□□□ -0.04
LSR1LSR1 SSN2P38931 1420 aa14.69□□□□□ -0.06
LSR1LSR1 TCB3Q03640 1545 aaKnown RBP14.55□□□□□ -0.08
LSR1LSR1 TY1B-DR4Q07793 1604 aa14.44□□□□□ -0.1
LSR1LSR1 HSL1P34244 1518 aa14.19□□□□□ -0.14
LSR1LSR1 DRS1P32892 752 aaKnown RBP14.09□□□□□ -0.15
LSR1LSR1 MON2P48563 1636 aaPredicted RBP14.08□□□□□ -0.15
LSR1LSR1 SPT6P23615 1451 aaKnown RBP14.08□□□□□ -0.16
LSR1LSR1 MTC1P47018 478 aaKnown RBP14□□□□□ -0.17
LSR1LSR1 HIR3P47171 1648 aa13.94□□□□□ -0.18
LSR1LSR1 SWR1Q05471 1514 aa13.93□□□□□ -0.18
LSR1LSR1 XRN1P22147 1528 aaKnown RBP13.84□□□□□ -0.19
LSR1LSR1 REV3P14284 1504 aa13.71□□□□□ -0.21
LSR1LSR1 SIN3P22579 1536 aa13.69□□□□□ -0.22
LSR1LSR1 THO2P53552 1597 aaKnown RBP13.64□□□□□ -0.23
LSR1LSR1 SSK2P53599 1579 aa13.61□□□□□ -0.23
LSR1LSR1 ESP1Q03018 1630 aa13.46□□□□□ -0.25
LSR1LSR1 TAF2P23255 1407 aa13.41□□□□□ -0.26
LSR1LSR1 SKI3P17883 1432 aaKnown RBP13.4□□□□□ -0.26
LSR1LSR1 MYO2P19524 1574 aaKnown RBP13.4□□□□□ -0.26
LSR1LSR1 CHD1P32657 1468 aa13.38□□□□□ -0.27
LSR1LSR1 DNA2P38859 1522 aa13.35□□□□□ -0.27
LSR1LSR1 KOG1P38873 1557 aa13.33□□□□□ -0.28
LSR1LSR1 ATG2P53855 1592 aa13.32□□□□□ -0.28
LSR1LSR1 MMS22Q06164 1454 aa13.31□□□□□ -0.28
LSR1LSR1 BUD4P47136 1447 aa13.28□□□□□ -0.28
LSR1LSR1 POL1P13382 1468 aa13.25□□□□□ -0.29
LSR1LSR1 YPK9Q12697 1472 aa13.22□□□□□ -0.29
LSR1LSR1 STU1P38198 1513 aa13.2□□□□□ -0.3
LSR1LSR1 ECM5Q03214 1411 aa13.17□□□□□ -0.3
LSR1LSR1 PEP1P32319 1579 aa13.16□□□□□ -0.3
LSR1LSR1 BPT1P14772 1559 aa13.09□□□□□ -0.31
LSR1LSR1 SCC2Q04002 1493 aa13.08□□□□□ -0.32
LSR1LSR1 MDS3P53094 1487 aa13.06□□□□□ -0.32
LSR1LSR1 RKR1Q04781 1562 aa13.06□□□□□ -0.32
LSR1LSR1 YTA7P40340 1379 aa13.06□□□□□ -0.32
LSR1LSR1 YOR1P53049 1477 aa13.04□□□□□ -0.32
LSR1LSR1 RPO31P04051 1460 aa13.02□□□□□ -0.33
LSR1LSR1 MYO4P32492 1471 aa12.97□□□□□ -0.33
LSR1LSR1 TY2B-LR1P0C2J3 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-FP0CX63 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-GR2P0CX64 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-CP25384 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-DR2Q03494 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY1B-DR1Q03855 1755 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-DR3Q07791 1770 aaKnown RBP12.93□□□□□ -0.34
LSR1LSR1 TY2B-OR1Q12113 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-DR1Q12472 1770 aa12.93□□□□□ -0.34
LSR1LSR1 TY2B-OR2Q12501 1770 aa12.93□□□□□ -0.34
LSR1LSR1 YCF1P39109 1515 aaKnown RBP12.93□□□□□ -0.34
LSR1LSR1 TOP2P06786 1428 aaKnown RBP12.92□□□□□ -0.34
LSR1LSR1 TY1B-DR3Q99231 1755 aa12.91□□□□□ -0.34
LSR1LSR1 SMC4Q12267 1418 aa12.9□□□□□ -0.34
LSR1LSR1 UFD4P33202 1483 aa12.86□□□□□ -0.35
LSR1LSR1 TRM732Q03496 1420 aa12.83□□□□□ -0.36
LSR1LSR1 TY2B-BQ12491 1770 aa12.83□□□□□ -0.36
LSR1LSR1 SNQ2P32568 1501 aaKnown RBP12.8□□□□□ -0.36
LSR1LSR1 SAS10Q12136 610 aaPredicted RBP12.8□□□□□ -0.36
LSR1LSR1 FAP1P53971 965 aa12.79□□□□□ -0.36
LSR1LSR1 RSE1Q04693 1361 aaKnown RBP12.75□□□□□ -0.37
LSR1LSR1 MLP2P40457 1679 aa12.73□□□□□ -0.37
LSR1LSR1 TY1B-HO13535 1793 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-DR5P0C2I2 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-DR6P0C2I3 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-LR2P0C2I5 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-LR3P0C2I6 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 TY1B-PR1P0C2I9 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 TY1B-PR2P0C2J0 1756 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-PR3P0C2J1 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 TY1B-JR1P47098 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-ML2Q03434 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 TY1B-ER1Q03612 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-ML1Q04711 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 TY1B-GR2Q12269 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-OLQ12273 1755 aa12.72□□□□□ -0.37
LSR1LSR1 TY1B-PLQ12414 1755 aaKnown RBP12.72□□□□□ -0.37
LSR1LSR1 NUP170P38181 1502 aa12.71□□□□□ -0.38
LSR1LSR1 TY1B-BRQ12193 1756 aa12.71□□□□□ -0.38
LSR1LSR1 TY1B-GR3Q12316 1755 aa12.71□□□□□ -0.38
LSR1LSR1 TY1B-ORQ92393 1755 aa12.71□□□□□ -0.38
LSR1LSR1 IKI3Q06706 1349 aaKnown RBP12.68□□□□□ -0.38
LSR1LSR1 STH1P32597 1359 aa12.67□□□□□ -0.38
LSR1LSR1 ULS1Q08562 1619 aa12.66□□□□□ -0.38
LSR1LSR1 PDR15Q04182 1529 aaKnown RBP12.65□□□□□ -0.38
LSR1LSR1 TAF7Q05021 590 aa12.62□□□□□ -0.39
LSR1LSR1 SPP41P38904 1435 aa12.6□□□□□ -0.39
LSR1LSR1 GEA1P47102 1408 aaPredicted RBP12.56□□□□□ -0.4
LSR1LSR1 VTH1P40438 1549 aa12.54□□□□□ -0.4
LSR1LSR1 VTH2P40890 1549 aa12.54□□□□□ -0.4
LSR1LSR1 SSM4P40318 1319 aa12.53□□□□□ -0.4
LSR1LSR1 CDC25P04821 1589 aa12.52□□□□□ -0.4
LSR1LSR1 TY1B-JR2P47100 1755 aaKnown RBP12.52□□□□□ -0.41
LSR1LSR1 TY1B-ER2Q03619 1755 aa12.52□□□□□ -0.41
LSR1LSR1 TY1B-MR1Q04214 1755 aa12.52□□□□□ -0.41
LSR1LSR1 TY1B-MR2Q04670 1755 aaKnown RBP12.52□□□□□ -0.41
LSR1LSR1 TY1B-LR1Q12088 1755 aaKnown RBP12.52□□□□□ -0.41
LSR1LSR1 TY1B-NL1Q12112 1755 aa12.52□□□□□ -0.41
LSR1LSR1 TY1B-GR1Q12141 1755 aa12.52□□□□□ -0.41
Retrieved 100 of 5,963 RNA–protein pairs in 409.4 ms