RNA–Protein interactions for RNA: ENST00000461674.5

LRCH3-210, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 537 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-210ENST00000461674 CHIC1Q5VXU3 224 aa21.13■□□□□ 0.97
LRCH3-210ENST00000461674 AEBP2Q6ZN18 517 aaPredicted RBP20.23■□□□□ 0.83
LRCH3-210ENST00000461674 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
LRCH3-210ENST00000461674 PLPPR3Q6T4P5 718 aa17.77■□□□□ 0.44
LRCH3-210ENST00000461674 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
LRCH3-210ENST00000461674 KCNA4P22459 653 aa17.01■□□□□ 0.31
LRCH3-210ENST00000461674 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
LRCH3-210ENST00000461674 SLC24A1O60721 1099 aa16.9■□□□□ 0.3
LRCH3-210ENST00000461674 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
LRCH3-210ENST00000461674 ADRA2BP18089 450 aa16.54■□□□□ 0.24
LRCH3-210ENST00000461674 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
LRCH3-210ENST00000461674 AMER1Q5JTC6 1135 aaPredicted RBP16.17■□□□□ 0.18
LRCH3-210ENST00000461674 RTN4Q9NQC3 1192 aaKnown RBP16.15■□□□□ 0.18
LRCH3-210ENST00000461674 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
LRCH3-210ENST00000461674 NCBP3Q53F19 620 aaKnown RBP15.81■□□□□ 0.12
LRCH3-210ENST00000461674 PPP4R3CPQ6ZMV5 832 aa15.81■□□□□ 0.12
LRCH3-210ENST00000461674 ZBTB22O15209 634 aa15.69■□□□□ 0.1
LRCH3-210ENST00000461674 NPM3O75607 178 aaKnown RBP15.58■□□□□ 0.08
LRCH3-210ENST00000461674 FOXD1Q16676 465 aa15.56■□□□□ 0.08
LRCH3-210ENST00000461674 FOXD4L1Q9NU39 408 aa15.3■□□□□ 0.04
LRCH3-210ENST00000461674 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0
LRCH3-210ENST00000461674 FKBP8Q14318 412 aa15.03■□□□□ -0
LRCH3-210ENST00000461674 PIAS4Q8N2W9 510 aaPredicted RBP15.01□□□□□ -0.01
LRCH3-210ENST00000461674 DNAJC5BQ9UF47 199 aa15□□□□□ -0.01
LRCH3-210ENST00000461674 PLCB2Q00722 1185 aa14.81□□□□□ -0.04
LRCH3-210ENST00000461674 BCANQ96GW7 911 aa14.76□□□□□ -0.05
LRCH3-210ENST00000461674 SCAF1Q9H7N4 1312 aaKnown RBP14.74□□□□□ -0.05
LRCH3-210ENST00000461674 PRKCSHP14314 528 aaPredicted RBP14.73□□□□□ -0.05
LRCH3-210ENST00000461674 TAOK2Q9UL54 1235 aa14.66□□□□□ -0.06
LRCH3-210ENST00000461674 ATXN8OSP0DMR3 200 aa14.64□□□□□ -0.07
LRCH3-210ENST00000461674 HAP1P54257 671 aaPredicted RBP14.58□□□□□ -0.08
LRCH3-210ENST00000461674 RNF216Q9NWF9 866 aaPredicted RBP14.45□□□□□ -0.1
LRCH3-210ENST00000461674 VSIG10Q8N0Z9 540 aa14.43□□□□□ -0.1
LRCH3-210ENST00000461674 DAXXQ9UER7 740 aaPredicted RBP14.41□□□□□ -0.1
LRCH3-210ENST00000461674 MYCNP04198 464 aaPredicted RBP14.39□□□□□ -0.11
LRCH3-210ENST00000461674 TPRNQ4KMQ1 711 aa14.39□□□□□ -0.11
LRCH3-210ENST00000461674 SLC4A2P04920 1241 aa14.37□□□□□ -0.11
LRCH3-210ENST00000461674 ARXQ96QS3 562 aa14.2□□□□□ -0.14
LRCH3-210ENST00000461674 MAPK8IP2Q13387 824 aaPredicted RBP14.17□□□□□ -0.14
LRCH3-210ENST00000461674 TIMELESSQ9UNS1 1208 aa14.17□□□□□ -0.14
LRCH3-210ENST00000461674 DCAF8L2P0C7V8 631 aa14.16□□□□□ -0.14
LRCH3-210ENST00000461674 FBXO3Q9UK99 471 aa14.14□□□□□ -0.15
LRCH3-210ENST00000461674 KDM2AQ9Y2K7 1162 aa14.06□□□□□ -0.16
LRCH3-210ENST00000461674 TULP1O00294 542 aaPredicted RBP14.05□□□□□ -0.16
LRCH3-210ENST00000461674 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
LRCH3-210ENST00000461674 ERICH6Q7L0X2 663 aa13.98□□□□□ -0.17
LRCH3-210ENST00000461674 FBLN2P98095 1184 aa13.95□□□□□ -0.18
LRCH3-210ENST00000461674 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.94□□□□□ -0.18
LRCH3-210ENST00000461674 VASPP50552 380 aaPredicted RBP13.91□□□□□ -0.18
LRCH3-210ENST00000461674 GTF3C3Q9Y5Q9 886 aa13.91□□□□□ -0.18
LRCH3-210ENST00000461674 PKD2Q13563 968 aa13.89□□□□□ -0.19
LRCH3-210ENST00000461674 BBXQ8WY36 941 aaPredicted RBP13.89□□□□□ -0.19
LRCH3-210ENST00000461674 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
LRCH3-210ENST00000461674 MSH5O43196 834 aa13.83□□□□□ -0.2
LRCH3-210ENST00000461674 HOMEZQ8IX15 550 aa13.83□□□□□ -0.2
LRCH3-210ENST00000461674 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
LRCH3-210ENST00000461674 IFNLR1Q8IU57 520 aaPredicted RBP13.81□□□□□ -0.2
LRCH3-210ENST00000461674 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
LRCH3-210ENST00000461674 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
LRCH3-210ENST00000461674 PROM2Q8N271 834 aa13.74□□□□□ -0.21
LRCH3-210ENST00000461674 SPDYE4A6NLX3 237 aa13.71□□□□□ -0.21
LRCH3-210ENST00000461674 NBR1Q14596 966 aa13.69□□□□□ -0.22
LRCH3-210ENST00000461674 NPM1P06748 294 aaKnown RBP eCLIP13.67□□□□□ -0.22
LRCH3-210ENST00000461674 TMEM132AQ24JP5 1023 aa13.65□□□□□ -0.22
LRCH3-210ENST00000461674 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
LRCH3-210ENST00000461674 TSHZ2Q9NRE2 1034 aa13.63□□□□□ -0.23
LRCH3-210ENST00000461674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.62□□□□□ -0.23
LRCH3-210ENST00000461674 HNRNPUL2Q1KMD3 747 aaKnown RBP13.62□□□□□ -0.23
LRCH3-210ENST00000461674 SPRYD3Q8NCJ5 442 aa13.62□□□□□ -0.23
LRCH3-210ENST00000461674 DNAJC5Q9H3Z4 198 aa13.57□□□□□ -0.24
LRCH3-210ENST00000461674 ECM2O94769 699 aaPredicted RBP13.54□□□□□ -0.24
LRCH3-210ENST00000461674 C14orf37Q86TY3 774 aa13.53□□□□□ -0.24
LRCH3-210ENST00000461674 ZNF219Q9P2Y4 722 aaPredicted RBP13.47□□□□□ -0.25
LRCH3-210ENST00000461674 SPOCK2Q92563 424 aa13.42□□□□□ -0.26
LRCH3-210ENST00000461674 RGL2O15211 777 aa13.37□□□□□ -0.27
LRCH3-210ENST00000461674 RANGAP1P46060 587 aaPredicted RBP13.35□□□□□ -0.27
LRCH3-210ENST00000461674 MKRN4PQ13434 485 aaPredicted RBP13.35□□□□□ -0.27
LRCH3-210ENST00000461674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.33□□□□□ -0.288e-8■■□□□ 14.2
LRCH3-210ENST00000461674 U3KPZ7 1027 aaPredicted RBP13.31□□□□□ -0.28
LRCH3-210ENST00000461674 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
LRCH3-210ENST00000461674 CHGAP10645 457 aaKnown RBP13.25□□□□□ -0.29
LRCH3-210ENST00000461674 PODXL2Q9NZ53 605 aa13.23□□□□□ -0.29
LRCH3-210ENST00000461674 APLP2Q06481 763 aa13.16□□□□□ -0.3
LRCH3-210ENST00000461674 HS6ST3Q8IZP7 471 aa13.1□□□□□ -0.31
LRCH3-210ENST00000461674 SUPT5HO00267 1087 aaKnown RBP13.08□□□□□ -0.32
LRCH3-210ENST00000461674 DCAF8L1A6NGE4 600 aa13.04□□□□□ -0.32
LRCH3-210ENST00000461674 STAG3Q9UJ98 1225 aa13□□□□□ -0.33
LRCH3-210ENST00000461674 PLCD3Q8N3E9 789 aa12.97□□□□□ -0.33
LRCH3-210ENST00000461674 TRIM41Q8WV44 630 aa12.96□□□□□ -0.33
LRCH3-210ENST00000461674 BRPF1P55201 1214 aaPredicted RBP12.95□□□□□ -0.34
LRCH3-210ENST00000461674 CIZ1Q9ULV3 898 aaPredicted RBP12.94□□□□□ -0.34
LRCH3-210ENST00000461674 P3H3Q8IVL6 736 aa12.9□□□□□ -0.34
LRCH3-210ENST00000461674 GTPBP6O43824 516 aaPredicted RBP12.88□□□□□ -0.35
LRCH3-210ENST00000461674 NKX1-1Q15270 411 aaPredicted RBP12.87□□□□□ -0.35
LRCH3-210ENST00000461674 LMOD2Q6P5Q4 547 aa12.87□□□□□ -0.35
LRCH3-210ENST00000461674 UBTFP17480 764 aaKnown RBP12.86□□□□□ -0.35
LRCH3-210ENST00000461674 NPM2Q86SE8 214 aaKnown RBP12.86□□□□□ -0.35
LRCH3-210ENST00000461674 TRIM26Q12899 539 aaPredicted RBP12.83□□□□□ -0.36
LRCH3-210ENST00000461674 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.82□□□□□ -0.36
LRCH3-210ENST00000461674 MIER1Q8N108 512 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms