RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	YNL011C	P53980	444 aa		5.05	□□□□□ -1.6
WHI3	YNL197C	RSC4	Q02206	625 aa		5.05	□□□□□ -1.6
WHI3	YNL197C	Q0182	Q9ZZW1	134 aa		5.05	□□□□□ -1.6
WHI3	YNL197C	MET22	P32179	357 aa		5.04	□□□□□ -1.6
WHI3	YNL197C	RTT106	P40161	455 aa		5.04	□□□□□ -1.6
WHI3	YNL197C	RGD2	P43556	714 aa		5.04	□□□□□ -1.6
WHI3	YNL197C	JJJ2	P46997	583 aa		5.04	□□□□□ -1.6
WHI3	YNL197C	MSB3	P48566	633 aa	Predicted RBP	5.04	□□□□□ -1.6
WHI3	YNL197C	JIP5	Q06214	492 aa	Predicted RBP	5.04	□□□□□ -1.6
WHI3	YNL197C	TY1A-DR3	Q12441	440 aa		5.04	□□□□□ -1.6
WHI3	YNL197C	YTA7	P40340	1379 aa		5.03	□□□□□ -1.6
WHI3	YNL197C	MSN1	P22148	382 aa		5.03	□□□□□ -1.6
WHI3	YNL197C	GCD6	P32501	712 aa	Known RBP	5.03	□□□□□ -1.6
WHI3	YNL197C	QDR2	P40474	542 aa		5.03	□□□□□ -1.6
WHI3	YNL197C	MSN5	P52918	1224 aa		5.03	□□□□□ -1.6
WHI3	YNL197C	SMC1	P32908	1225 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	VPS35	P34110	944 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	NTA1	P40354	457 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	AAD14	P42884	376 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	RPC31	P17890	251 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.02	□□□□□ -1.61	not detected
WHI3	YNL197C	SLA1	P32790	1244 aa		5.02	□□□□□ -1.61
WHI3	YNL197C	AFT1	P22149	690 aa		5.01	□□□□□ -1.61
WHI3	YNL197C	LDH1	P38139	375 aa		5.01	□□□□□ -1.61
WHI3	YNL197C	DYS1	P38791	387 aa		5.01	□□□□□ -1.61
WHI3	YNL197C	RPS26A	P39938	119 aa	Known RBP	5.01	□□□□□ -1.61
WHI3	YNL197C	RPS26B	P39939	119 aa	Known RBP	5.01	□□□□□ -1.61
WHI3	YNL197C	YGR122W	P53272	402 aa		5.01	□□□□□ -1.61
WHI3	YNL197C	BSC2	Q05611	235 aa		5.01	□□□□□ -1.61
WHI3	YNL197C	TIF6	Q12522	245 aa	Known RBP	5.01	□□□□□ -1.61
WHI3	YNL197C	CYC8	P14922	966 aa		5	□□□□□ -1.61
WHI3	YNL197C	RAD55	P38953	406 aa		5	□□□□□ -1.61
WHI3	YNL197C	SAM37	P50110	327 aa		5	□□□□□ -1.61
WHI3	YNL197C	HXK1	P04806	485 aa	Known RBP	5	□□□□□ -1.61
WHI3	YNL197C	UGA3	P26370	528 aa		5	□□□□□ -1.61
WHI3	YNL197C	ALA1	P40825	983 aa	Known RBP	5	□□□□□ -1.61
WHI3	YNL197C	VPS16	Q03308	798 aa		5	□□□□□ -1.61
WHI3	YNL197C	BSD2	P38356	321 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	FAA3	P39002	694 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	PSY2	P40164	858 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	ALD3	P54114	506 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	CTR9	P89105	1077 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	RMD1	Q03441	430 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	NOC3	Q07896	663 aa	Predicted RBP	4.99	□□□□□ -1.61
WHI3	YNL197C	PIN2	Q12057	282 aa		4.99	□□□□□ -1.61
WHI3	YNL197C	IRE1	P32361	1115 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	ASH1	P34233	588 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	IRS4	P36115	615 aa	Known RBP	4.98	□□□□□ -1.61
WHI3	YNL197C	VTC4	P47075	721 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	YDR444W	Q04093	687 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	PSH1	Q12161	406 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	COB	P00163	385 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	DAL1	P32375	460 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	KAP122	P32767	1081 aa		4.98	□□□□□ -1.61
WHI3	YNL197C	ARG82	P07250	355 aa		4.97	□□□□□ -1.61
WHI3	YNL197C	PDC6	P26263	563 aa	Known RBP	4.97	□□□□□ -1.61
WHI3	YNL197C	DLD1	P32891	587 aa		4.97	□□□□□ -1.61
WHI3	YNL197C	CIC1	P38779	376 aa	Known RBP	4.97	□□□□□ -1.61
WHI3	YNL197C	PTK2	P47116	818 aa	Known RBP	4.97	□□□□□ -1.61
WHI3	YNL197C	INP54	Q08227	384 aa	Known RBP	4.97	□□□□□ -1.61
WHI3	YNL197C	YOR296W	Q08748	1289 aa		4.97	□□□□□ -1.61
WHI3	YNL197C	RAD2	P07276	1031 aa		4.96	□□□□□ -1.61
WHI3	YNL197C	NAP1	P25293	417 aa	Known RBP	4.96	□□□□□ -1.61
WHI3	YNL197C	ISW1	P38144	1129 aa		4.96	□□□□□ -1.61
WHI3	YNL197C	GIP1	P38229	639 aa		4.96	□□□□□ -1.61
WHI3	YNL197C	NNF1	P47149	201 aa		4.96	□□□□□ -1.61
WHI3	YNL197C	ALD6	P54115	500 aa	Known RBP	4.96	□□□□□ -1.61
WHI3	YNL197C	ESF1	Q06344	628 aa	Known RBP	4.96	□□□□□ -1.61
WHI3	YNL197C	FLP1	P03870	423 aa		4.96	□□□□□ -1.62
WHI3	YNL197C	LEU1	P07264	779 aa	Known RBP	4.96	□□□□□ -1.62
WHI3	YNL197C	MTO1	P53070	669 aa		4.96	□□□□□ -1.62
WHI3	YNL197C	AHP1	P38013	176 aa	Known RBP	4.95	□□□□□ -1.62
WHI3	YNL197C	VAC8	P39968	578 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	FIR1	P40020	876 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	SKP1	P52286	194 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	EMG1	Q06287	252 aa	Known RBP	4.95	□□□□□ -1.62
WHI3	YNL197C	SSF2	Q12153	453 aa	Predicted RBP	4.95	□□□□□ -1.62
WHI3	YNL197C	UGA4	P32837	571 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	DUR3	P33413	735 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	YJR098C	P47139	656 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	YJR115W	P47152	169 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	HST3	P53687	447 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	CUS1	Q02554	436 aa	Predicted RBP	4.95	□□□□□ -1.62
WHI3	YNL197C	LCB5	Q06147	687 aa	Known RBP	4.95	□□□□□ -1.62
WHI3	YNL197C	OXR1	Q08952	273 aa		4.95	□□□□□ -1.62
WHI3	YNL197C	DAL4	Q04895	635 aa		4.94	□□□□□ -1.62
WHI3	YNL197C	PEP7	P32609	515 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	PRP40	P33203	583 aa	Known RBP	4.93	□□□□□ -1.62
WHI3	YNL197C	YTA6	P40328	754 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	ITC1	P53125	1264 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	YCS4	Q06156	1176 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	PRE9	P23638	258 aa	Known RBP	4.93	□□□□□ -1.62
WHI3	YNL197C	PET112	P33893	541 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	MNR2	P35724	969 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	YHL008C	P38750	627 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	IOC3	P43596	787 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	YDL176W	Q12027	708 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	YOL098C	Q12496	1037 aa		4.93	□□□□□ -1.62
WHI3	YNL197C	YIL165C	P40446	119 aa		4.92	□□□□□ -1.62
WHI3	YNL197C	MAD1	P40957	749 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 91.7 ms