RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C MTC1P47018 478 aaKnown RBP10.19□□□□□ -0.78
WHI3YNL197C DRS1P32892 752 aaKnown RBP10.05□□□□□ -0.8
WHI3YNL197C FAP1P53971 965 aa9.74□□□□□ -0.85
WHI3YNL197C PRY3P47033 881 aa9.17□□□□□ -0.94
WHI3YNL197C AAD16Q02895 342 aa8.9□□□□□ -0.99
WHI3YNL197C PRI1P10363 409 aa8.88□□□□□ -0.99
WHI3YNL197C BFR2Q06631 534 aaKnown RBP8.82□□□□□ -1
WHI3YNL197C YCK3P39962 524 aa8.65□□□□□ -1.02
WHI3YNL197C HAA1Q12753 694 aaKnown RBP8.6□□□□□ -1.03
WHI3YNL197C TFA1P36100 482 aa8.59□□□□□ -1.03
WHI3YNL197C ISW2Q08773 1120 aa8.56□□□□□ -1.04
WHI3YNL197C AVT3P36062 692 aa8.49□□□□□ -1.05
WHI3YNL197C RPG1P38249 964 aaKnown RBP8.48□□□□□ -1.05
WHI3YNL197C DIP2Q12220 943 aaPredicted RBP8.44□□□□□ -1.06
WHI3YNL197C TSR3Q12094 313 aaKnown RBP8.35□□□□□ -1.07
WHI3YNL197C MRPL32P25348 183 aa8.04□□□□□ -1.12
WHI3YNL197C RSE1Q04693 1361 aaKnown RBP7.96□□□□□ -1.14
WHI3YNL197C YGL015CP33199 130 aa7.86□□□□□ -1.15
WHI3YNL197C REB1P21538 810 aa7.75□□□□□ -1.17
WHI3YNL197C RPL17AP05740 184 aaKnown RBP7.73□□□□□ -1.17
WHI3YNL197C RPL17BP46990 184 aaKnown RBP7.73□□□□□ -1.17
WHI3YNL197C CDC27P38042 758 aa7.54□□□□□ -1.2
WHI3YNL197C RQC2Q12532 1038 aaKnown RBP7.49□□□□□ -1.21
WHI3YNL197C BUD31P25337 157 aaPredicted RBP7.44□□□□□ -1.22
WHI3YNL197C UBP10P53874 792 aaPredicted RBP7.41□□□□□ -1.22
WHI3YNL197C YKR023WP36119 530 aaKnown RBP7.4□□□□□ -1.23
WHI3YNL197C SPT21P35209 758 aa7.39□□□□□ -1.23
WHI3YNL197C MAP2P38174 421 aaKnown RBP7.37□□□□□ -1.23
WHI3YNL197C RIM101P33400 625 aa7.32□□□□□ -1.24
WHI3YNL197C TFC8Q12308 588 aa7.26□□□□□ -1.25
WHI3YNL197C HOP09932 586 aa7.24□□□□□ -1.25
WHI3YNL197C PTP3P40048 928 aa7.23□□□□□ -1.25
WHI3YNL197C DCD1P06773 312 aa7.22□□□□□ -1.25
WHI3YNL197C DMA1P38823 416 aa7.19□□□□□ -1.26
WHI3YNL197C OXP1P28273 1286 aa7.13□□□□□ -1.27
WHI3YNL197C SCY1P53009 804 aa7.13□□□□□ -1.27
WHI3YNL197C SSP1P38871 571 aa7.11□□□□□ -1.27
WHI3YNL197C TIF4632P39936 914 aaKnown RBP7.11□□□□□ -1.27
WHI3YNL197C TGL3P40308 642 aa7.09□□□□□ -1.27
WHI3YNL197C SLX5P32828 619 aaKnown RBP7.08□□□□□ -1.28
WHI3YNL197C UBP9P39967 754 aa7.03□□□□□ -1.28
WHI3YNL197C SIS1P25294 352 aaKnown RBP7.02□□□□□ -1.29
WHI3YNL197C BCH2P36122 765 aa6.99□□□□□ -1.29
WHI3YNL197C YLR271WQ06152 274 aa6.98□□□□□ -1.29
WHI3YNL197C YAH1Q12184 172 aaKnown RBP6.98□□□□□ -1.29
WHI3YNL197C YIL055CP40523 627 aaKnown RBP6.9□□□□□ -1.3
WHI3YNL197C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.9□□□□□ -1.3not detected
WHI3YNL197C RSM7P47150 247 aa6.84□□□□□ -1.31
WHI3YNL197C MGA2P40578 1113 aa6.83□□□□□ -1.32
WHI3YNL197C CST9Q06032 482 aa6.8□□□□□ -1.32
WHI3YNL197C EPS1P40557 701 aa6.78□□□□□ -1.32
WHI3YNL197C PSD2P53037 1138 aaKnown RBP6.77□□□□□ -1.33
WHI3YNL197C BDF1P35817 686 aa6.77□□□□□ -1.33
WHI3YNL197C SAS10Q12136 610 aaPredicted RBP6.76□□□□□ -1.33
WHI3YNL197C MST1P07236 462 aa6.74□□□□□ -1.33
WHI3YNL197C AI2P03876 854 aa6.71□□□□□ -1.33
WHI3YNL197C TAF7Q05021 590 aa6.7□□□□□ -1.34
WHI3YNL197C LEO1P38439 464 aa6.69□□□□□ -1.34
WHI3YNL197C YBL029C-AQ3E756 94 aa6.69□□□□□ -1.34
WHI3YNL197C YOR238WQ08634 303 aa6.68□□□□□ -1.34
WHI3YNL197C NSR1P27476 414 aaKnown RBP RIP-Chip data6.64□□□□□ -1.35not detected
WHI3YNL197C LEU3P08638 886 aa6.62□□□□□ -1.35
WHI3YNL197C VNX1P42839 908 aa6.6□□□□□ -1.35
WHI3YNL197C BBC1P47068 1157 aa6.6□□□□□ -1.35
WHI3YNL197C RAM2P29703 316 aa6.59□□□□□ -1.35
WHI3YNL197C YAP5P40574 245 aa6.57□□□□□ -1.36
WHI3YNL197C RCR1P38212 213 aa6.55□□□□□ -1.36
WHI3YNL197C SPP1Q03012 353 aa6.55□□□□□ -1.36
WHI3YNL197C MRM1P25270 412 aa6.52□□□□□ -1.37
WHI3YNL197C WSC3Q12215 556 aa6.51□□□□□ -1.37
WHI3YNL197C SET1P38827 1080 aaKnown RBP6.48□□□□□ -1.37
WHI3YNL197C YPR148CQ06523 435 aa6.47□□□□□ -1.37
WHI3YNL197C AIR2Q12476 344 aaKnown RBP6.46□□□□□ -1.37
WHI3YNL197C TIF11P38912 153 aaKnown RBP6.46□□□□□ -1.38
WHI3YNL197C RTG3P38165 486 aa6.44□□□□□ -1.38
WHI3YNL197C FKH1P40466 484 aa6.44□□□□□ -1.38
WHI3YNL197C GTT3P39996 337 aa6.43□□□□□ -1.38
WHI3YNL197C MAK11P20484 414 aaKnown RBP6.42□□□□□ -1.38
WHI3YNL197C YJL171CP46992 396 aa6.42□□□□□ -1.38
WHI3YNL197C VPS29P38759 282 aa6.4□□□□□ -1.38
WHI3YNL197C VPS70P47161 811 aa6.38□□□□□ -1.39
WHI3YNL197C RPN1P38764 993 aaKnown RBP6.37□□□□□ -1.39
WHI3YNL197C IFH1P39520 1085 aa6.37□□□□□ -1.39
WHI3YNL197C CKB1P43639 278 aa6.37□□□□□ -1.39
WHI3YNL197C LDB19Q12502 818 aa6.35□□□□□ -1.39
WHI3YNL197C ULI1P43604 169 aa6.34□□□□□ -1.39
WHI3YNL197C IOC2Q12072 812 aa6.33□□□□□ -1.4
WHI3YNL197C COQ8P27697 501 aa6.33□□□□□ -1.4
WHI3YNL197C SPB4P25808 606 aaPredicted RBP6.32□□□□□ -1.4
WHI3YNL197C PIB1Q06651 286 aa6.32□□□□□ -1.4
WHI3YNL197C STS1P38637 319 aa6.31□□□□□ -1.4
WHI3YNL197C DSF2P38213 736 aa6.31□□□□□ -1.4
WHI3YNL197C BMT6Q12291 365 aa6.3□□□□□ -1.4
WHI3YNL197C EDS1P38073 919 aa6.28□□□□□ -1.4
WHI3YNL197C YMR1P47147 688 aaKnown RBP RIP-Chip data6.28□□□□□ -1.4not detected
WHI3YNL197C DMA2P53924 522 aa6.27□□□□□ -1.4
WHI3YNL197C NOP53Q12080 455 aaKnown RBP6.27□□□□□ -1.41
WHI3YNL197C MSB4Q12317 492 aa6.27□□□□□ -1.41
WHI3YNL197C PBS2P08018 668 aa6.26□□□□□ -1.41
WHI3YNL197C DBP1P24784 617 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms