Protein–RNA interactions for Protein: P34110

VPS35, Vacuolar protein sorting-associated protein 35, yeastyeast

Predictions only

Length 944 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS35P34110 YML009W-BYML009W-B 477 nt22.46■■□□□ 1.19
VPS35P34110 NSR1YGR159C 1245 nt22.26■■□□□ 1.15
VPS35P34110 NOP1YDL014W 984 nt21.96■■□□□ 1.11
VPS35P34110 YKL036CYKL036C 393 nt20.3■□□□□ 0.84
VPS35P34110 MDJ1YFL016C 1536 nt19.58■□□□□ 0.73
VPS35P34110 Q0297Q0297 156 nt19.18■□□□□ 0.66
VPS35P34110 SRX1YKL086W 384 nt19.12■□□□□ 0.65
VPS35P34110 YJL027CYJL027C 417 nt18.98■□□□□ 0.63
VPS35P34110 SCS3YGL126W 1143 nt18.45■□□□□ 0.54
VPS35P34110 YCR051WYCR051W 669 nt18.17■□□□□ 0.5
VPS35P34110 YOL085CYOL085C 342 nt17.53■□□□□ 0.4
VPS35P34110 DBP2YNL112W 1641 nt17.32■□□□□ 0.36
VPS35P34110 PKP1YIL042C 1185 nt17.24■□□□□ 0.35
VPS35P34110 RPP1BYDL130W 321 nt17.22■□□□□ 0.35
VPS35P34110 TRN1tP(UGG)A 72 nt17.19■□□□□ 0.34
VPS35P34110 SUF9tP(UGG)F 72 nt17.19■□□□□ 0.34
VPS35P34110 SUF8tP(UGG)H 72 nt17.19■□□□□ 0.34
VPS35P34110 tP(UGG)LtP(UGG)L 72 nt17.19■□□□□ 0.34
VPS35P34110 SUF7tP(UGG)M 72 nt17.19■□□□□ 0.34
VPS35P34110 tP(UGG)N1tP(UGG)N1 72 nt17.19■□□□□ 0.34
VPS35P34110 tP(UGG)N2tP(UGG)N2 72 nt17.19■□□□□ 0.34
VPS35P34110 tP(UGG)O1tP(UGG)O1 72 nt17.19■□□□□ 0.34
VPS35P34110 SUF11tP(UGG)O2 72 nt17.19■□□□□ 0.34
VPS35P34110 CCC1YLR220W 969 nt17.05■□□□□ 0.32
VPS35P34110 YBR190WYBR190W 312 nt16.75■□□□□ 0.27
VPS35P34110 ATS1YAL020C 1002 nt16.56■□□□□ 0.24
VPS35P34110 SCJ1YMR214W 1134 nt16.56■□□□□ 0.24
VPS35P34110 RVS167YDR388W 1449 nt16.5■□□□□ 0.23
VPS35P34110 RTC3YHR087W 336 nt16.41■□□□□ 0.22
VPS35P34110 PET122YER153C 765 nt16.39■□□□□ 0.21
VPS35P34110 SCR1SCR1 522 nt16.37■□□□□ 0.21
VPS35P34110 tP(UGG)O3tP(UGG)O3 72 nt16.32■□□□□ 0.2
VPS35P34110 RRN5YLR141W 1092 nt15.95■□□□□ 0.14
VPS35P34110 SHR5YOL110W 714 nt15.89■□□□□ 0.13
VPS35P34110 YDJ1YNL064C 1230 nt15.81■□□□□ 0.12
VPS35P34110 RSB1YOR049C 1065 nt15.69■□□□□ 0.1
VPS35P34110 YER088W-BYER088W-B 147 nt15.63■□□□□ 0.09
VPS35P34110 GAR1YHR089C 618 nt15.43■□□□□ 0.06
VPS35P34110 URN1YPR152C 1398 nt15.36■□□□□ 0.05
VPS35P34110 DEP1YAL013W 1218 nt15.35■□□□□ 0.05
VPS35P34110 SSA3YBL075C 1950 nt15.33■□□□□ 0.04
VPS35P34110 PST2YDR032C 597 nt15.3■□□□□ 0.04
VPS35P34110 RPN10YHR200W 807 nt15.25■□□□□ 0.03
VPS35P34110 YNL208WYNL208W 600 nt15.19■□□□□ 0.02
VPS35P34110 OPI9YLR338W 858 nt15.11■□□□□ 0.01
VPS35P34110 PUT4YOR348C 1884 nt15.05■□□□□ -0
VPS35P34110 SAH1YER043C 1350 nt14.96□□□□□ -0.02
VPS35P34110 Q0182Q0182 405 nt14.94□□□□□ -0.02
VPS35P34110 TIR1YER011W 765 nt14.9□□□□□ -0.02
VPS35P34110 YKL097CYKL097C 411 nt14.8□□□□□ -0.04
VPS35P34110 ARE1YCR048W 1833 nt14.79□□□□□ -0.04
VPS35P34110 PUN1YLR414C 792 nt14.72□□□□□ -0.05
VPS35P34110 YJR018WYJR018W 363 nt14.67□□□□□ -0.06
VPS35P34110 YHR049C-AYHR049C-A 297 nt14.65□□□□□ -0.06
VPS35P34110 SSA1YAL005C 1929 nt14.64□□□□□ -0.07
VPS35P34110 SHU1YHL006C 453 nt14.63□□□□□ -0.07
VPS35P34110 POA1YBR022W 534 nt14.62□□□□□ -0.07
VPS35P34110 MOT3YMR070W 1473 nt14.57□□□□□ -0.08
VPS35P34110 RPP2BYDR382W 333 nt14.49□□□□□ -0.09
VPS35P34110 PTC2YER089C 1395 nt14.47□□□□□ -0.09
VPS35P34110 YAL037C-BYAL037C-B 975 nt14.38□□□□□ -0.11
VPS35P34110 BUD23YCR047C 828 nt14.36□□□□□ -0.11
VPS35P34110 YJR120WYJR120W 351 nt14.32□□□□□ -0.12
VPS35P34110 SRB2YHR041C 633 nt14.31□□□□□ -0.12
VPS35P34110 NAB2YGL122C 1578 nt14.3□□□□□ -0.12
VPS35P34110 BSC6YOL137W 1494 nt14.3□□□□□ -0.12
VPS35P34110 YGR021WYGR021W 873 nt14.27□□□□□ -0.13
VPS35P34110 WWM1YFL010C 636 nt14.23□□□□□ -0.13
VPS35P34110 INM2YDR287W 879 nt14.19□□□□□ -0.14
VPS35P34110 HOM6YJR139C 1080 nt14.14□□□□□ -0.15
VPS35P34110 BDH2YAL061W 1254 nt14.14□□□□□ -0.15
VPS35P34110 DAL1YIR027C 1383 nt14.12□□□□□ -0.15
VPS35P34110 FPR4YLR449W 1179 nt14.12□□□□□ -0.15
VPS35P34110 YOR139CYOR139C 393 nt14.09□□□□□ -0.15
VPS35P34110 NPL3YDR432W 1245 nt14.08□□□□□ -0.16
VPS35P34110 YFL021C-AYFL021C-A 855 nt14.06□□□□□ -0.16
VPS35P34110 MNP1YGL068W 585 nt14.05□□□□□ -0.16
VPS35P34110 FIS1YIL065C 468 nt14.02□□□□□ -0.17
VPS35P34110 YBL100CYBL100C 315 nt14.02□□□□□ -0.17
VPS35P34110 LSM3YLR438C-A 270 nt14.01□□□□□ -0.17
VPS35P34110 SPT5YML010W 3192 nt13.97□□□□□ -0.17
VPS35P34110 PHO4YFR034C 939 nt13.96□□□□□ -0.17
VPS35P34110 YOL037CYOL037C 354 nt13.96□□□□□ -0.17
VPS35P34110 RKM5YLR137W 1104 nt13.95□□□□□ -0.18
VPS35P34110 TRM9YML014W 840 nt13.9□□□□□ -0.18
VPS35P34110 FUN26YAL022C 1554 nt13.84□□□□□ -0.19
VPS35P34110 ALF1YNL148C 765 nt13.7□□□□□ -0.22
VPS35P34110 CCT6YDR188W 1641 nt13.69□□□□□ -0.22
VPS35P34110 SUF2tP(AGG)C 72 nt13.66□□□□□ -0.22
VPS35P34110 SUF10tP(AGG)N 72 nt13.66□□□□□ -0.22
VPS35P34110 YPS1YLR120C 1710 nt13.64□□□□□ -0.23
VPS35P34110 YLR281CYLR281C 468 nt13.58□□□□□ -0.24
VPS35P34110 SSA4YER103W 1929 nt13.57□□□□□ -0.24
VPS35P34110 YDR095CYDR095C 411 nt13.57□□□□□ -0.24
VPS35P34110 tM(CAU)CtM(CAU)C 72 nt13.57□□□□□ -0.24
VPS35P34110 IMT4tM(CAU)E 72 nt13.57□□□□□ -0.24
VPS35P34110 IMT3tM(CAU)J3 72 nt13.57□□□□□ -0.24
VPS35P34110 IMT1tM(CAU)O1 72 nt13.57□□□□□ -0.24
VPS35P34110 IMT2tM(CAU)P 72 nt13.57□□□□□ -0.24
VPS35P34110 YHR165W-AYHR165W-A 312 nt13.54□□□□□ -0.24
Retrieved 100 of 7,029 protein–RNA pairs in 15.9 ms