RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	CDC15	P27636	974 aa		13.95	□□□□□ -0.18
BDF1	YLR399C	RGD1	P38339	666 aa		13.95	□□□□□ -0.18
BDF1	YLR399C	SAP1	P39955	897 aa	Known RBP	13.95	□□□□□ -0.18
BDF1	YLR399C	YPL150W	Q12152	901 aa		13.95	□□□□□ -0.18
BDF1	YLR399C	MCM16	Q12262	181 aa		13.95	□□□□□ -0.18
BDF1	YLR399C	BYE1	P36106	594 aa		13.94	□□□□□ -0.18
BDF1	YLR399C	CTK3	P46963	296 aa	Predicted RBP	13.94	□□□□□ -0.18
BDF1	YLR399C	YGL242C	P53066	181 aa		13.94	□□□□□ -0.18
BDF1	YLR399C	DOS2	P54858	310 aa		13.94	□□□□□ -0.18
BDF1	YLR399C	YPL225W	Q08971	146 aa	Known RBP	13.94	□□□□□ -0.18
BDF1	YLR399C	SRP54	P20424	541 aa	Known RBP	13.93	□□□□□ -0.18
BDF1	YLR399C	HGH1	P48362	394 aa	Known RBP	13.93	□□□□□ -0.18
BDF1	YLR399C	YPT11	P48559	417 aa		13.93	□□□□□ -0.18
BDF1	YLR399C	STE11	P23561	717 aa		13.92	□□□□□ -0.18
BDF1	YLR399C	REI1	P38344	393 aa	Predicted RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	TFG2	P41896	400 aa	Predicted RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	BRE1	Q07457	700 aa	Known RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	YOL057W	Q08225	711 aa		13.92	□□□□□ -0.18
BDF1	YLR399C	RRP43	P25359	394 aa	Predicted RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	SPO22	P40511	975 aa		13.92	□□□□□ -0.18
BDF1	YLR399C	STR2	P47164	639 aa		13.92	□□□□□ -0.18
BDF1	YLR399C	APT1	P49435	187 aa	Known RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	PRP43	P53131	767 aa	Known RBP	13.92	□□□□□ -0.18
BDF1	YLR399C	AOS1	Q06624	347 aa		13.92	□□□□□ -0.18
BDF1	YLR399C	UBC1	P21734	215 aa	Known RBP	13.91	□□□□□ -0.18
BDF1	YLR399C	YCG1	Q06680	1035 aa		13.91	□□□□□ -0.18
BDF1	YLR399C	NCB2	Q92317	146 aa		13.91	□□□□□ -0.18
BDF1	YLR399C	SAP190	P36123	1033 aa		13.9	□□□□□ -0.18
BDF1	YLR399C	RAD4	P14736	754 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	VPS72	Q03388	795 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	SWI1	P09547	1314 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	SPT2	P06843	333 aa	Predicted RBP	13.89	□□□□□ -0.19
BDF1	YLR399C	PSY4	P38193	441 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	RFC5	P38251	354 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	PSK2	Q08217	1101 aa		13.89	□□□□□ -0.19
BDF1	YLR399C	YRF1-2	P40105	1681 aa		13.88	□□□□□ -0.19
BDF1	YLR399C	OMS1	Q06668	471 aa		13.88	□□□□□ -0.19
BDF1	YLR399C	PGA3	Q12746	312 aa	Known RBP	13.88	□□□□□ -0.19
BDF1	YLR399C	NSE3	Q05541	303 aa		13.87	□□□□□ -0.19
BDF1	YLR399C	PUS1	Q12211	544 aa	Known RBP	13.87	□□□□□ -0.19
BDF1	YLR399C	CCT4	P39078	528 aa	Known RBP	13.87	□□□□□ -0.19
BDF1	YLR399C	VPS75	P53853	264 aa		13.87	□□□□□ -0.19
BDF1	YLR399C	RRP1	P35178	278 aa	Predicted RBP	13.86	□□□□□ -0.19
BDF1	YLR399C	CAJ1	P39101	391 aa		13.86	□□□□□ -0.19
BDF1	YLR399C	ALO1	P54783	526 aa	Known RBP	13.86	□□□□□ -0.19
BDF1	YLR399C	YDR306C	Q06640	478 aa		13.86	□□□□□ -0.19
BDF1	YLR399C	ISW2	Q08773	1120 aa		13.86	□□□□□ -0.19
BDF1	YLR399C	SWI3	P32591	825 aa		13.86	□□□□□ -0.19
BDF1	YLR399C	CAF130	P53280	1122 aa	Predicted RBP	13.86	□□□□□ -0.19
BDF1	YLR399C	PIB2	P53191	635 aa		13.85	□□□□□ -0.19
BDF1	YLR399C	NDC80	P40460	691 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	ZDS2	P54786	942 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	TMA16	Q08687	178 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	DPB3	P27344	201 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	YHL017W	P38745	532 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	CIC1	P38779	376 aa	Known RBP	13.84	□□□□□ -0.19
BDF1	YLR399C	SEC9	P40357	651 aa		13.84	□□□□□ -0.19
BDF1	YLR399C	RPO26	P20435	155 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	KTR1	P27810	393 aa	Known RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	STO1	P34160	861 aa	Known RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	NUP133	P36161	1157 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	SFH1	Q06168	426 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	RRP5	Q05022	1729 aa	Known RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	PDC1	P06169	563 aa	Known RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	UGA3	P26370	528 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	ECM32	P32644	1121 aa	Known RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	KTR3	P38130	404 aa	Predicted RBP	13.83	□□□□□ -0.2
BDF1	YLR399C	VPS4	P52917	437 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	MLC1	P53141	149 aa		13.83	□□□□□ -0.2
BDF1	YLR399C	ATG23	Q06671	453 aa		13.82	□□□□□ -0.2
BDF1	YLR399C	SEC39	Q12745	709 aa		13.82	□□□□□ -0.2
BDF1	YLR399C	STM1	P39015	273 aa	Known RBP	13.81	□□□□□ -0.2
BDF1	YLR399C	YKT6	P36015	200 aa	Known RBP	13.81	□□□□□ -0.2
BDF1	YLR399C	MUD2	P36084	527 aa	Known RBP	13.8	□□□□□ -0.2
BDF1	YLR399C	BUD6	P41697	788 aa		13.8	□□□□□ -0.2
BDF1	YLR399C	YNL011C	P53980	444 aa		13.8	□□□□□ -0.2
BDF1	YLR399C	YOL098C	Q12496	1037 aa		13.8	□□□□□ -0.2
BDF1	YLR399C	MCM4	P30665	933 aa	Known RBP	13.79	□□□□□ -0.2
BDF1	YLR399C	YNR029C	P53729	429 aa	Known RBP	13.79	□□□□□ -0.2
BDF1	YLR399C	YKE2	P52553	114 aa		13.79	□□□□□ -0.2
BDF1	YLR399C	MAL13	P53338	473 aa		13.79	□□□□□ -0.2
BDF1	YLR399C	HOT1	Q03213	719 aa		13.79	□□□□□ -0.2
BDF1	YLR399C	ATG9	Q12142	997 aa		13.79	□□□□□ -0.2
BDF1	YLR399C	RUD3	Q12234	484 aa	Known RBP	13.79	□□□□□ -0.2
BDF1	YLR399C	SPT8	P38915	602 aa		13.78	□□□□□ -0.2
BDF1	YLR399C	SDH5	Q08230	162 aa		13.78	□□□□□ -0.2
BDF1	YLR399C	YOR223W	Q12015	292 aa		13.78	□□□□□ -0.2
BDF1	YLR399C	PHO13	P19881	312 aa		13.77	□□□□□ -0.21
BDF1	YLR399C	SPT5	P27692	1063 aa	Known RBP	13.77	□□□□□ -0.21
BDF1	YLR399C	HUL4	P40985	892 aa		13.77	□□□□□ -0.21
BDF1	YLR399C	YDR338C	Q05497	695 aa		13.77	□□□□□ -0.21
BDF1	YLR399C	MATALPHA2	P0CY08	210 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	HMLALPHA2	P0CY09	210 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	SLA1	P32790	1244 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	RFT1	P38206	574 aa	Predicted RBP	13.76	□□□□□ -0.21
BDF1	YLR399C	KCC4	P25389	1037 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	FBP26	P32604	452 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	VPS38	Q05919	439 aa		13.76	□□□□□ -0.21
BDF1	YLR399C	YEL043W	P32618	956 aa		13.75	□□□□□ -0.21
BDF1	YLR399C	MGA2	P40578	1113 aa		13.75	□□□□□ -0.21

Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms