Protein–RNA interactions for Protein: Q07457

BRE1, E3 ubiquitin-protein ligase BRE1, yeastyeast

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
BRE1Q07457 YML009W-BYML009W-B 477 nt24.39■■□□□ 1.49
BRE1Q07457 NSR1YGR159C 1245 nt24.23■■□□□ 1.47
BRE1Q07457 NOP1YDL014W 984 nt23.68■■□□□ 1.38
BRE1Q07457 YKL036CYKL036C 393 nt21.82■■□□□ 1.08
BRE1Q07457 MDJ1YFL016C 1536 nt21.58■■□□□ 1.04
BRE1Q07457 Q0297Q0297 156 nt20.7■□□□□ 0.9
BRE1Q07457 SRX1YKL086W 384 nt20.67■□□□□ 0.9
BRE1Q07457 YJL027CYJL027C 417 nt20.38■□□□□ 0.85
BRE1Q07457 SCS3YGL126W 1143 nt19.84■□□□□ 0.77
BRE1Q07457 YCR051WYCR051W 669 nt19.65■□□□□ 0.74
BRE1Q07457 DBP2YNL112W 1641 nt19.05■□□□□ 0.64
BRE1Q07457 YOL085CYOL085C 342 nt18.9■□□□□ 0.62
BRE1Q07457 TRN1tP(UGG)A 72 nt18.71■□□□□ 0.59
BRE1Q07457 SUF9tP(UGG)F 72 nt18.71■□□□□ 0.59
BRE1Q07457 SUF8tP(UGG)H 72 nt18.71■□□□□ 0.59
BRE1Q07457 tP(UGG)LtP(UGG)L 72 nt18.71■□□□□ 0.59
BRE1Q07457 SUF7tP(UGG)M 72 nt18.71■□□□□ 0.59
BRE1Q07457 tP(UGG)N1tP(UGG)N1 72 nt18.71■□□□□ 0.59
BRE1Q07457 tP(UGG)N2tP(UGG)N2 72 nt18.71■□□□□ 0.59
BRE1Q07457 tP(UGG)O1tP(UGG)O1 72 nt18.71■□□□□ 0.59
BRE1Q07457 SUF11tP(UGG)O2 72 nt18.71■□□□□ 0.59
BRE1Q07457 PKP1YIL042C 1185 nt18.65■□□□□ 0.58
BRE1Q07457 RPP1BYDL130W 321 nt18.59■□□□□ 0.57
BRE1Q07457 CCC1YLR220W 969 nt18.57■□□□□ 0.56
BRE1Q07457 YBR190WYBR190W 312 nt18.38■□□□□ 0.53
BRE1Q07457 RTC3YHR087W 336 nt18.01■□□□□ 0.47
BRE1Q07457 RVS167YDR388W 1449 nt17.92■□□□□ 0.46
BRE1Q07457 SCJ1YMR214W 1134 nt17.82■□□□□ 0.44
BRE1Q07457 PET122YER153C 765 nt17.78■□□□□ 0.44
BRE1Q07457 ATS1YAL020C 1002 nt17.74■□□□□ 0.43
BRE1Q07457 tP(UGG)O3tP(UGG)O3 72 nt17.71■□□□□ 0.43
BRE1Q07457 SCR1SCR1 522 nt17.57■□□□□ 0.4
BRE1Q07457 SHR5YOL110W 714 nt17.28■□□□□ 0.36
BRE1Q07457 RRN5YLR141W 1092 nt17.27■□□□□ 0.36
BRE1Q07457 YDJ1YNL064C 1230 nt17.11■□□□□ 0.33
BRE1Q07457 YER088W-BYER088W-B 147 nt16.93■□□□□ 0.3
BRE1Q07457 RSB1YOR049C 1065 nt16.91■□□□□ 0.3
BRE1Q07457 DEP1YAL013W 1218 nt16.84■□□□□ 0.29
BRE1Q07457 URN1YPR152C 1398 nt16.83■□□□□ 0.28
BRE1Q07457 GAR1YHR089C 618 nt16.77■□□□□ 0.28
BRE1Q07457 PUT4YOR348C 1884 nt16.71■□□□□ 0.27
BRE1Q07457 OPI9YLR338W 858 nt16.58■□□□□ 0.24
BRE1Q07457 RPN10YHR200W 807 nt16.57■□□□□ 0.24
BRE1Q07457 YNL208WYNL208W 600 nt16.55■□□□□ 0.24
BRE1Q07457 SAH1YER043C 1350 nt16.5■□□□□ 0.23
BRE1Q07457 PST2YDR032C 597 nt16.42■□□□□ 0.22
BRE1Q07457 ARE1YCR048W 1833 nt16.4■□□□□ 0.22
BRE1Q07457 YHR049C-AYHR049C-A 297 nt16.21■□□□□ 0.19
BRE1Q07457 POA1YBR022W 534 nt16.21■□□□□ 0.19
BRE1Q07457 TIR1YER011W 765 nt16.2■□□□□ 0.18
BRE1Q07457 PUN1YLR414C 792 nt16.1■□□□□ 0.17
BRE1Q07457 YJR018WYJR018W 363 nt16.05■□□□□ 0.16
BRE1Q07457 SSA1YAL005C 1929 nt16.01■□□□□ 0.15
BRE1Q07457 PTC2YER089C 1395 nt15.92■□□□□ 0.14
BRE1Q07457 BUD23YCR047C 828 nt15.86■□□□□ 0.13
BRE1Q07457 BSC6YOL137W 1494 nt15.85■□□□□ 0.13
BRE1Q07457 YJR120WYJR120W 351 nt15.79■□□□□ 0.12
BRE1Q07457 SHU1YHL006C 453 nt15.77■□□□□ 0.12
BRE1Q07457 YKL097CYKL097C 411 nt15.77■□□□□ 0.12
BRE1Q07457 SRB2YHR041C 633 nt15.74■□□□□ 0.11
BRE1Q07457 RPP2BYDR382W 333 nt15.72■□□□□ 0.11
BRE1Q07457 NAB2YGL122C 1578 nt15.7■□□□□ 0.1
BRE1Q07457 YAL037C-BYAL037C-B 975 nt15.58■□□□□ 0.08
BRE1Q07457 SSA3YBL075C 1950 nt15.56■□□□□ 0.08
BRE1Q07457 FPR4YLR449W 1179 nt15.51■□□□□ 0.07
BRE1Q07457 DAL1YIR027C 1383 nt15.5■□□□□ 0.07
BRE1Q07457 WWM1YFL010C 636 nt15.49■□□□□ 0.07
BRE1Q07457 FIS1YIL065C 468 nt15.48■□□□□ 0.07
BRE1Q07457 INM2YDR287W 879 nt15.47■□□□□ 0.07
BRE1Q07457 BDH2YAL061W 1254 nt15.39■□□□□ 0.05
BRE1Q07457 YGR021WYGR021W 873 nt15.37■□□□□ 0.05
BRE1Q07457 PHO4YFR034C 939 nt15.35■□□□□ 0.05
BRE1Q07457 YBL100CYBL100C 315 nt15.34■□□□□ 0.05
BRE1Q07457 HOM6YJR139C 1080 nt15.31■□□□□ 0.04
BRE1Q07457 MNP1YGL068W 585 nt15.26■□□□□ 0.03
BRE1Q07457 YFL021C-AYFL021C-A 855 nt15.22■□□□□ 0.03
BRE1Q07457 LSM3YLR438C-A 270 nt15.18■□□□□ 0.02
BRE1Q07457 FUN26YAL022C 1554 nt15.15■□□□□ 0.02
BRE1Q07457 YOR139CYOR139C 393 nt15.14■□□□□ 0.01
BRE1Q07457 TRM9YML014W 840 nt15.12■□□□□ 0.01
BRE1Q07457 RKM5YLR137W 1104 nt15.1■□□□□ 0.01
BRE1Q07457 SPT5YML010W 3192 nt15.04■□□□□ -0
BRE1Q07457 YPS1YLR120C 1710 nt15.04■□□□□ -0
BRE1Q07457 NPL3YDR432W 1245 nt15.03■□□□□ -0
BRE1Q07457 YOL037CYOL037C 354 nt14.97□□□□□ -0.01
BRE1Q07457 YDR095CYDR095C 411 nt14.95□□□□□ -0.02
BRE1Q07457 ALF1YNL148C 765 nt14.95□□□□□ -0.02
BRE1Q07457 CCT6YDR188W 1641 nt14.95□□□□□ -0.02
BRE1Q07457 YHR165W-AYHR165W-A 312 nt14.91□□□□□ -0.02
BRE1Q07457 MEP2YNL142W 1500 nt14.87□□□□□ -0.03
BRE1Q07457 SUF2tP(AGG)C 72 nt14.83□□□□□ -0.04
BRE1Q07457 SUF10tP(AGG)N 72 nt14.83□□□□□ -0.04
BRE1Q07457 Q0182Q0182 405 nt14.81□□□□□ -0.04
BRE1Q07457 SIS1YNL007C 1059 nt14.7□□□□□ -0.06
BRE1Q07457 RPP2AYOL039W 321 nt14.68□□□□□ -0.06
BRE1Q07457 DCW1YKL046C 1350 nt14.65□□□□□ -0.06
BRE1Q07457 YLR281CYLR281C 468 nt14.63□□□□□ -0.07
BRE1Q07457 PTP1YDL230W 1008 nt14.61□□□□□ -0.07
BRE1Q07457 WHI5YOR083W 888 nt14.6□□□□□ -0.07
BRE1Q07457 YLR154C-GYLR154C-G 150 nt14.58□□□□□ -0.08
Retrieved 100 of 7,029 protein–RNA pairs in 11.9 ms