RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 TNRQ92752 1358 aa23.68■■□□□ 1.38
PNKP-218ENST00000625299 KIF3BO15066 747 aa23.68■■□□□ 1.38
PNKP-218ENST00000625299 PIP4K2BP78356 416 aa23.68■■□□□ 1.38
PNKP-218ENST00000625299 FBXO31Q5XUX0 539 aaPredicted RBP23.68■■□□□ 1.38
PNKP-218ENST00000625299 NEURL4Q96JN8 1562 aa23.66■■□□□ 1.38
PNKP-218ENST00000625299 KDM5DQ9BY66 1539 aa23.66■■□□□ 1.38
PNKP-218ENST00000625299 CEP162Q5TB80 1403 aa23.66■■□□□ 1.38
PNKP-218ENST00000625299 PZPP20742 1482 aa23.64■■□□□ 1.38
PNKP-218ENST00000625299 CCDC141Q6ZP82 1450 aa23.64■■□□□ 1.38
PNKP-218ENST00000625299 CPS1P31327 1500 aa23.64■■□□□ 1.37
PNKP-218ENST00000625299 HSPA1LP34931 641 aa23.63■■□□□ 1.37
PNKP-218ENST00000625299 CAMSAP2Q08AD1 1489 aa23.62■■□□□ 1.37
PNKP-218ENST00000625299 WASHC2CQ9Y4E1 1318 aa23.62■■□□□ 1.37
PNKP-218ENST00000625299 SHANK2Q9UPX8 1470 aa23.62■■□□□ 1.37
PNKP-218ENST00000625299 TOM1O60784 492 aa23.61■■□□□ 1.37
PNKP-218ENST00000625299 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.61■■□□□ 1.37
PNKP-218ENST00000625299 MED1Q15648 1581 aaPredicted RBP23.6■■□□□ 1.37
PNKP-218ENST00000625299 FAM135AQ9P2D6 1515 aa23.59■■□□□ 1.37
PNKP-218ENST00000625299 NCOA2Q15596 1464 aa23.58■■□□□ 1.37
PNKP-218ENST00000625299 ANKLE2Q86XL3 938 aa23.58■■□□□ 1.37
PNKP-218ENST00000625299 UGGT1Q9NYU2 1555 aa23.56■■□□□ 1.36
PNKP-218ENST00000625299 VWDEQ8N2E2 1590 aa23.55■■□□□ 1.36
PNKP-218ENST00000625299 MIA2Q96PC5 1412 aa23.54■■□□□ 1.36
PNKP-218ENST00000625299 THEMISQ8N1K5 641 aaPredicted RBP23.54■■□□□ 1.36
PNKP-218ENST00000625299 NLRP1Q9C000 1473 aa23.54■■□□□ 1.36
PNKP-218ENST00000625299 NPHP4O75161 1426 aaPredicted RBP23.53■■□□□ 1.36
PNKP-218ENST00000625299 RSPH4AQ5TD94 716 aa23.52■■□□□ 1.36
PNKP-218ENST00000625299 DEPDC5O75140 1603 aa23.51■■□□□ 1.35
PNKP-218ENST00000625299 IQGAP1P46940 1657 aa23.51■■□□□ 1.35
PNKP-218ENST00000625299 TSPY4P0CV99 314 aa23.5■■□□□ 1.35
PNKP-218ENST00000625299 TSPY10P0CW01 314 aa23.5■■□□□ 1.35
PNKP-218ENST00000625299 SENP3Q9H4L4 574 aaPredicted RBP23.5■■□□□ 1.35
PNKP-218ENST00000625299 ARHGEF5Q12774 1597 aa23.49■■□□□ 1.35
PNKP-218ENST00000625299 MED14O60244 1454 aa23.48■■□□□ 1.35
PNKP-218ENST00000625299 PHF23Q9BUL5 403 aaPredicted RBP23.47■■□□□ 1.35
PNKP-218ENST00000625299 RNF17Q9BXT8 1623 aaKnown RBP23.45■■□□□ 1.34
PNKP-218ENST00000625299 ALKQ9UM73 1620 aa23.45■■□□□ 1.34
PNKP-218ENST00000625299 ABCC3O15438 1527 aa23.45■■□□□ 1.34
PNKP-218ENST00000625299 ZC3H13Q5T200 1668 aaKnown RBP23.44■■□□□ 1.34
PNKP-218ENST00000625299 STRCP1A6NGW2 1772 aa23.44■■□□□ 1.34
PNKP-218ENST00000625299 CFAP65Q6ZU64 1925 aaKnown RBP23.41■■□□□ 1.34
PNKP-218ENST00000625299 ERVK-7P63135 1459 aa23.41■■□□□ 1.34
PNKP-218ENST00000625299 CEP152O94986 1710 aa23.4■■□□□ 1.34
PNKP-218ENST00000625299 SYNMO15061 1565 aa23.4■■□□□ 1.34
PNKP-218ENST00000625299 MAST1Q9Y2H9 1570 aa23.4■■□□□ 1.34
PNKP-218ENST00000625299 LRRC7Q96NW7 1537 aa23.39■■□□□ 1.34
PNKP-218ENST00000625299 EIF2AK4Q9P2K8 1649 aaKnown RBP23.39■■□□□ 1.33
PNKP-218ENST00000625299 MROH1Q8NDA8 1641 aa23.36■■□□□ 1.33
PNKP-218ENST00000625299 UBR1Q8IWV7 1749 aa23.36■■□□□ 1.33
PNKP-218ENST00000625299 LRRC9Q6ZRR7 1453 aa23.36■■□□□ 1.33
PNKP-218ENST00000625299 SCAF11Q99590 1463 aaKnown RBP23.32■■□□□ 1.32
PNKP-218ENST00000625299 VPS8Q8N3P4 1428 aa23.3■■□□□ 1.32
PNKP-218ENST00000625299 DUOX2Q9NRD8 1548 aa23.28■■□□□ 1.32
PNKP-218ENST00000625299 TXNDC2Q86VQ3 553 aa23.27■■□□□ 1.32
PNKP-218ENST00000625299 MYOM3Q5VTT5 1437 aa23.26■■□□□ 1.31
PNKP-218ENST00000625299 LTKP29376 864 aa23.26■■□□□ 1.31
PNKP-218ENST00000625299 KANK4Q5T7N3 995 aaPredicted RBP23.26■■□□□ 1.31
PNKP-218ENST00000625299 SLIT1O75093 1534 aa23.24■■□□□ 1.31
PNKP-218ENST00000625299 XIRP1Q702N8 1843 aaKnown RBP23.24■■□□□ 1.31
PNKP-218ENST00000625299 ARHGAP23Q9P227 1491 aa23.24■■□□□ 1.31
PNKP-218ENST00000625299 EID1Q9Y6B2 187 aa23.23■■□□□ 1.31
PNKP-218ENST00000625299 KIF15Q9NS87 1388 aa23.23■■□□□ 1.31
PNKP-218ENST00000625299 PRDM15P57071 1507 aaPredicted RBP23.23■■□□□ 1.31
PNKP-218ENST00000625299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.22■■□□□ 1.31
PNKP-218ENST00000625299 PIK3C2BO00750 1634 aa23.22■■□□□ 1.31
PNKP-218ENST00000625299 CROCC2H7BZ55 1655 aa23.2■■□□□ 1.3
PNKP-218ENST00000625299 RRP7BPQ9NSQ0 103 aa23.2■■□□□ 1.3
PNKP-218ENST00000625299 STAG3Q9UJ98 1225 aa23.2■■□□□ 1.3
PNKP-218ENST00000625299 ARHGAP31Q2M1Z3 1444 aa23.19■■□□□ 1.3
PNKP-218ENST00000625299 ERBINQ96RT1 1412 aa23.18■■□□□ 1.3
PNKP-218ENST00000625299 MAP3K1Q13233 1512 aa23.17■■□□□ 1.3
PNKP-218ENST00000625299 TMEM2Q9UHN6 1383 aa23.15■■□□□ 1.3
PNKP-218ENST00000625299 LOC105371045A0A1W2PR82 267 aa23.15■■□□□ 1.3
PNKP-218ENST00000625299 RGS17Q9UGC6 210 aaPredicted RBP23.15■■□□□ 1.3
PNKP-218ENST00000625299 ABCC5O15440 1437 aa23.15■■□□□ 1.3
PNKP-218ENST00000625299 KANK1Q14678 1352 aa23.14■■□□□ 1.3
PNKP-218ENST00000625299 PTPN23Q9H3S7 1636 aa23.14■■□□□ 1.29
PNKP-218ENST00000625299 EFCAB6Q5THR3 1501 aa23.13■■□□□ 1.29
PNKP-218ENST00000625299 TMEM94Q12767 1356 aa23.12■■□□□ 1.29
PNKP-218ENST00000625299 DAPK1P53355 1430 aa23.1■■□□□ 1.29
PNKP-218ENST00000625299 RBM33Q96EV2 1170 aaKnown RBP23.1■■□□□ 1.29
PNKP-218ENST00000625299 FAM135BQ49AJ0 1406 aa23.09■■□□□ 1.29
PNKP-218ENST00000625299 SLC26A8Q96RN1 970 aa23.09■■□□□ 1.29
PNKP-218ENST00000625299 ROBO1Q9Y6N7 1651 aa23.09■■□□□ 1.29
PNKP-218ENST00000625299 KDM5AP29375 1690 aaKnown RBP23.08■■□□□ 1.29
PNKP-218ENST00000625299 KCNA6P17658 529 aa23.07■■□□□ 1.28
PNKP-218ENST00000625299 IDI1Q13907 227 aa23.07■■□□□ 1.28
PNKP-218ENST00000625299 PROSER2Q86WR7 435 aaPredicted RBP23.07■■□□□ 1.28
PNKP-218ENST00000625299 CHIC2Q9UKJ5 165 aa23.07■■□□□ 1.28
PNKP-218ENST00000625299 BCANQ96GW7 911 aa23.06■■□□□ 1.28
PNKP-218ENST00000625299 LMTK2Q8IWU2 1503 aa23.04■■□□□ 1.28
PNKP-218ENST00000625299 APLP2Q06481 763 aa23.04■■□□□ 1.28
PNKP-218ENST00000625299 TET3O43151 1660 aa23.03■■□□□ 1.28
PNKP-218ENST00000625299 ADGRB3O60242 1522 aa23.03■■□□□ 1.28
PNKP-218ENST00000625299 ANKRD30AQ9BXX3 1397 aa23.03■■□□□ 1.28
PNKP-218ENST00000625299 POTEAQ6S8J7 498 aa23.02■■□□□ 1.28
PNKP-218ENST00000625299 FGD6Q6ZV73 1430 aa23.01■■□□□ 1.27
PNKP-218ENST00000625299 NWD1Q149M9 1564 aa23■■□□□ 1.27
PNKP-218ENST00000625299 NKTRP30414 1462 aaKnown RBP22.99■■□□□ 1.27
PNKP-218ENST00000625299 NOS1P29475 1434 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms