RNA–Protein interactions for RNA: ENST00000616527.4

MALAT1-208, metastasis associated lung adenocarcinoma transcript 1, human

TSL 3 BASIC

Gene MALAT1, Length 572 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MALAT1-208	ENST00000616527	RANGAP1	P46060	587 aa	Predicted RBP	11.93	□□□□□ -0.5
MALAT1-208	ENST00000616527	NKX1-1	Q15270	411 aa	Predicted RBP	11.93	□□□□□ -0.5
MALAT1-208	ENST00000616527	FYCO1	Q9BQS8	1478 aa		11.93	□□□□□ -0.5
MALAT1-208	ENST00000616527	RRBP1	Q9P2E9	1410 aa	Known RBP	11.92	□□□□□ -0.5
MALAT1-208	ENST00000616527	KIAA0586	Q9BVV6	1533 aa		11.91	□□□□□ -0.5
MALAT1-208	ENST00000616527	RYDEN	Q9NUL5	291 aa	Known RBP	11.9	□□□□□ -0.5
MALAT1-208	ENST00000616527	UGGT2	Q9NYU1	1516 aa		11.9	□□□□□ -0.5
MALAT1-208	ENST00000616527	TIAM1	Q13009	1591 aa		11.89	□□□□□ -0.51
MALAT1-208	ENST00000616527	HOXB3	P14651	431 aa	Predicted RBP	11.89	□□□□□ -0.51
MALAT1-208	ENST00000616527	KANK4	Q5T7N3	995 aa	Predicted RBP	11.89	□□□□□ -0.51
MALAT1-208	ENST00000616527	EIF4G3	O43432	1585 aa	Known RBP	11.88	□□□□□ -0.51
MALAT1-208	ENST00000616527	FHOD3	Q2V2M9	1422 aa		11.88	□□□□□ -0.51
MALAT1-208	ENST00000616527	SYNJ2	O15056	1496 aa		11.88	□□□□□ -0.51
MALAT1-208	ENST00000616527	SNAPC4	Q5SXM2	1469 aa		11.88	□□□□□ -0.51
MALAT1-208	ENST00000616527	LRRC9	Q6ZRR7	1453 aa		11.88	□□□□□ -0.51
MALAT1-208	ENST00000616527	DOK7	Q18PE1	504 aa		11.87	□□□□□ -0.51
MALAT1-208	ENST00000616527	GRIN2A	Q12879	1464 aa		11.87	□□□□□ -0.51
MALAT1-208	ENST00000616527	IQGAP2	Q13576	1575 aa		11.87	□□□□□ -0.51
MALAT1-208	ENST00000616527	HAP1	P54257	671 aa	Predicted RBP	11.86	□□□□□ -0.51
MALAT1-208	ENST00000616527	PCDH10	Q9P2E7	1040 aa		11.85	□□□□□ -0.51
MALAT1-208	ENST00000616527	PCF11	O94913	1555 aa	Known RBP	11.84	□□□□□ -0.51
MALAT1-208	ENST00000616527	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
MALAT1-208	ENST00000616527	KIF3C	O14782	793 aa		11.84	□□□□□ -0.51
MALAT1-208	ENST00000616527	NUP160	Q12769	1436 aa		11.84	□□□□□ -0.51
MALAT1-208	ENST00000616527	ZNF710	Q8N1W2	664 aa		11.83	□□□□□ -0.52
MALAT1-208	ENST00000616527	CFAP43	Q8NDM7	1665 aa		11.83	□□□□□ -0.52
MALAT1-208	ENST00000616527	CCNB3	Q8WWL7	1395 aa		11.82	□□□□□ -0.52
MALAT1-208	ENST00000616527	C2orf72	A6NCS6	295 aa		11.82	□□□□□ -0.52
MALAT1-208	ENST00000616527	BBX	Q8WY36	941 aa	Predicted RBP	11.82	□□□□□ -0.52
MALAT1-208	ENST00000616527	RIMBP2	O15034	1052 aa		11.81	□□□□□ -0.52
MALAT1-208	ENST00000616527	P3H3	Q8IVL6	736 aa		11.81	□□□□□ -0.52
MALAT1-208	ENST00000616527	MARVELD3	Q96A59	401 aa		11.81	□□□□□ -0.52
MALAT1-208	ENST00000616527	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.81	□□□□□ -0.52
MALAT1-208	ENST00000616527	TMC2	Q8TDI7	906 aa		11.8	□□□□□ -0.52
MALAT1-208	ENST00000616527	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.8	□□□□□ -0.52
MALAT1-208	ENST00000616527	CCDC18	Q5T9S5	1454 aa		11.8	□□□□□ -0.52
MALAT1-208	ENST00000616527	GTPBP6	O43824	516 aa	Predicted RBP	11.79	□□□□□ -0.52
MALAT1-208	ENST00000616527	HOXB1	P14653	301 aa	Predicted RBP	11.78	□□□□□ -0.52
MALAT1-208	ENST00000616527	CCER1	Q8TC90	406 aa	Predicted RBP	11.78	□□□□□ -0.52
MALAT1-208	ENST00000616527	ZSWIM6	Q9HCJ5	1215 aa		11.78	□□□□□ -0.52
MALAT1-208	ENST00000616527	CLSPN	Q9HAW4	1339 aa		11.78	□□□□□ -0.52
MALAT1-208	ENST00000616527	DISP1	Q96F81	1524 aa		11.77	□□□□□ -0.52
MALAT1-208	ENST00000616527	EMP3	P54852	163 aa		11.77	□□□□□ -0.53
MALAT1-208	ENST00000616527	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.75	□□□□□ -0.53
MALAT1-208	ENST00000616527	PHLDB1	Q86UU1	1377 aa		11.75	□□□□□ -0.53
MALAT1-208	ENST00000616527	KIAA0556	O60303	1618 aa		11.75	□□□□□ -0.53
MALAT1-208	ENST00000616527	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.74	□□□□□ -0.53
MALAT1-208	ENST00000616527	CDAN1	Q8IWY9	1227 aa		11.74	□□□□□ -0.53
MALAT1-208	ENST00000616527	CEP170	Q5SW79	1584 aa		11.74	□□□□□ -0.53
MALAT1-208	ENST00000616527	HECW1	Q76N89	1606 aa		11.74	□□□□□ -0.53
MALAT1-208	ENST00000616527	MTUS2	Q5JR59	1369 aa		11.73	□□□□□ -0.53
MALAT1-208	ENST00000616527	CARMIL2	Q6F5E8	1435 aa		11.73	□□□□□ -0.53
MALAT1-208	ENST00000616527	EHBP1L1	Q8N3D4	1523 aa		11.73	□□□□□ -0.53
MALAT1-208	ENST00000616527	JPH4	Q96JJ6	628 aa		11.72	□□□□□ -0.53
MALAT1-208	ENST00000616527	CFAP44	Q96MT7	982 aa		11.72	□□□□□ -0.53
MALAT1-208	ENST00000616527	ARHGEF11	O15085	1522 aa		11.71	□□□□□ -0.53
MALAT1-208	ENST00000616527	EPRS	P07814	1512 aa	Known RBP	11.71	□□□□□ -0.53
MALAT1-208	ENST00000616527	GPR153	Q6NV75	609 aa		11.71	□□□□□ -0.53
MALAT1-208	ENST00000616527	GPHN	Q9NQX3	736 aa	Predicted RBP	11.71	□□□□□ -0.53
MALAT1-208	ENST00000616527	FAM205C	A6NFA0	338 aa		11.69	□□□□□ -0.54
MALAT1-208	ENST00000616527	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.69	□□□□□ -0.54
MALAT1-208	ENST00000616527	FGD6	Q6ZV73	1430 aa		11.69	□□□□□ -0.54
MALAT1-208	ENST00000616527	SLC34A2	O95436	690 aa		11.68	□□□□□ -0.54
MALAT1-208	ENST00000616527	FOXK1	P85037	733 aa		11.68	□□□□□ -0.54
MALAT1-208	ENST00000616527	HS3ST6	Q96QI5	342 aa		11.68	□□□□□ -0.54
MALAT1-208	ENST00000616527	MYOM3	Q5VTT5	1437 aa		11.68	□□□□□ -0.54
MALAT1-208	ENST00000616527	ARSI	Q5FYB1	569 aa		11.67	□□□□□ -0.54
MALAT1-208	ENST00000616527	NCOA2	Q15596	1464 aa		11.67	□□□□□ -0.54
MALAT1-208	ENST00000616527	MIA2	Q96PC5	1412 aa		11.67	□□□□□ -0.54
MALAT1-208	ENST00000616527	VSIG10	Q8N0Z9	540 aa		11.66	□□□□□ -0.54
MALAT1-208	ENST00000616527	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.66	□□□□□ -0.54
MALAT1-208	ENST00000616527	NUP153	P49790	1475 aa	Known RBP	11.65	□□□□□ -0.54
MALAT1-208	ENST00000616527	POTEB3	A0JP26	581 aa		11.65	□□□□□ -0.54
MALAT1-208	ENST00000616527	POTEB	Q6S5H4	581 aa		11.65	□□□□□ -0.54
MALAT1-208	ENST00000616527	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.65	□□□□□ -0.54
MALAT1-208	ENST00000616527	TCOF1	Q13428	1488 aa	Known RBP	11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	ERBB3	P21860	1342 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	SETD5	Q9C0A6	1442 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	DSG2	Q14126	1118 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	PLPP6	Q8IY26	295 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	CRISPLD2	Q9H0B8	497 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	DHX57	Q6P158	1386 aa	Known RBP	11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	RAPGEF6	Q8TEU7	1601 aa		11.64	□□□□□ -0.55
MALAT1-208	ENST00000616527	LRRIQ1	Q96JM4	1722 aa		11.63	□□□□□ -0.55
MALAT1-208	ENST00000616527	SPRYD3	Q8NCJ5	442 aa		11.63	□□□□□ -0.55
MALAT1-208	ENST00000616527	KDM2A	Q9Y2K7	1162 aa		11.63	□□□□□ -0.55
MALAT1-208	ENST00000616527	ACIN1	Q9UKV3	1341 aa	Known RBP	11.62	□□□□□ -0.55
MALAT1-208	ENST00000616527	MAGI3	Q5TCQ9	1506 aa		11.62	□□□□□ -0.55
MALAT1-208	ENST00000616527	PDE4A	P27815	886 aa		11.61	□□□□□ -0.55
MALAT1-208	ENST00000616527	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.61	□□□□□ -0.55	1e-323	■□□□□ 10.9
MALAT1-208	ENST00000616527	PLSCR2	Q9NRY7	297 aa		11.61	□□□□□ -0.55
MALAT1-208	ENST00000616527	PCDHGA4	Q9Y5G9	962 aa		11.61	□□□□□ -0.55
MALAT1-208	ENST00000616527	ABCA8	O94911	1581 aa		11.61	□□□□□ -0.55
MALAT1-208	ENST00000616527	NCKAP5L	Q9HCH0	1330 aa		11.6	□□□□□ -0.55
MALAT1-208	ENST00000616527	FAM50A	Q14320	339 aa	Known RBP	11.6	□□□□□ -0.55
MALAT1-208	ENST00000616527	SHROOM2	Q13796	1616 aa		11.6	□□□□□ -0.55
MALAT1-208	ENST00000616527	TRO	Q12816	1431 aa	Predicted RBP	11.6	□□□□□ -0.55
MALAT1-208	ENST00000616527	AKNA	Q7Z591	1439 aa		11.6	□□□□□ -0.55
MALAT1-208	ENST00000616527	RAB3GAP2	Q9H2M9	1393 aa		11.59	□□□□□ -0.55
MALAT1-208	ENST00000616527	PRG4	Q92954	1404 aa	Predicted RBP	11.59	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 915.6 ms