RNA–Protein interactions for RNA: ENST00000616527.4

MALAT1-208, metastasis associated lung adenocarcinoma transcript 1, humanhuman

TSL 3 BASIC

Gene MALAT1, Length 572 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MALAT1-208ENST00000616527 AEBP2Q6ZN18 517 aaPredicted RBP26.24■■□□□ 1.79
MALAT1-208ENST00000616527 CHIC1Q5VXU3 224 aa25.28■■□□□ 1.64
MALAT1-208ENST00000616527 SENP3Q9H4L4 574 aaPredicted RBP22.35■■□□□ 1.17
MALAT1-208ENST00000616527 PHF23Q9BUL5 403 aaPredicted RBP22.18■■□□□ 1.14
MALAT1-208ENST00000616527 FOXD1Q16676 465 aa20.77■□□□□ 0.92
MALAT1-208ENST00000616527 PLPPR3Q6T4P5 718 aa20.37■□□□□ 0.85
MALAT1-208ENST00000616527 PPP6R1Q9UPN7 881 aa19.69■□□□□ 0.74
MALAT1-208ENST00000616527 ADRA2BP18089 450 aa19.64■□□□□ 0.73
MALAT1-208ENST00000616527 PIAS4Q8N2W9 510 aaPredicted RBP19.49■□□□□ 0.71
MALAT1-208ENST00000616527 MSH5O43196 834 aa19.33■□□□□ 0.68
MALAT1-208ENST00000616527 POTEDQ86YR6 584 aa18.23■□□□□ 0.51
MALAT1-208ENST00000616527 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.48
MALAT1-208ENST00000616527 MAPK8IP2Q13387 824 aaPredicted RBP17.93■□□□□ 0.46
MALAT1-208ENST00000616527 PPP4R3CPQ6ZMV5 832 aa17.89■□□□□ 0.45
MALAT1-208ENST00000616527 DMRT2Q9Y5R5 561 aa17.78■□□□□ 0.44
MALAT1-208ENST00000616527 CNKSR2Q8WXI2 1034 aa17.49■□□□□ 0.39
MALAT1-208ENST00000616527 NISCHQ9Y2I1 1504 aa17.41■□□□□ 0.38
MALAT1-208ENST00000616527 NCBP3Q53F19 620 aaKnown RBP17.33■□□□□ 0.36
MALAT1-208ENST00000616527 HOXD11P31277 338 aaPredicted RBP17.27■□□□□ 0.36
MALAT1-208ENST00000616527 RNF216Q9NWF9 866 aaPredicted RBP17.24■□□□□ 0.35
MALAT1-208ENST00000616527 NPM3O75607 178 aaKnown RBP17.05■□□□□ 0.32
MALAT1-208ENST00000616527 KCNA4P22459 653 aa17.03■□□□□ 0.32
MALAT1-208ENST00000616527 DCAF8L1A6NGE4 600 aa16.99■□□□□ 0.31
MALAT1-208ENST00000616527 DNAJC5BQ9UF47 199 aa16.67■□□□□ 0.26
MALAT1-208ENST00000616527 RNF39Q9H2S5 420 aa16.52■□□□□ 0.24
MALAT1-208ENST00000616527 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.22
MALAT1-208ENST00000616527 CACNB1Q02641 598 aaPredicted RBP16.35■□□□□ 0.21
MALAT1-208ENST00000616527 C1QBPQ07021 282 aaKnown RBP16.31■□□□□ 0.2
MALAT1-208ENST00000616527 SLC4A2P04920 1241 aa16.19■□□□□ 0.18
MALAT1-208ENST00000616527 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
MALAT1-208ENST00000616527 U3KPZ7 1027 aaPredicted RBP16.13■□□□□ 0.17
MALAT1-208ENST00000616527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.12
MALAT1-208ENST00000616527 HNRNPUL2Q1KMD3 747 aaKnown RBP15.83■□□□□ 0.12
MALAT1-208ENST00000616527 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
MALAT1-208ENST00000616527 MYCNP04198 464 aaPredicted RBP15.78■□□□□ 0.12
MALAT1-208ENST00000616527 SPINK5Q9NQ38 1064 aaPredicted RBP15.78■□□□□ 0.12
MALAT1-208ENST00000616527 APLP2Q06481 763 aa15.76■□□□□ 0.11
MALAT1-208ENST00000616527 SAMD1Q6SPF0 538 aaPredicted RBP15.75■□□□□ 0.11
MALAT1-208ENST00000616527 CAPN15O75808 1086 aa15.74■□□□□ 0.11
MALAT1-208ENST00000616527 ZBTB22O15209 634 aa15.66■□□□□ 0.1
MALAT1-208ENST00000616527 ZNF219Q9P2Y4 722 aaPredicted RBP15.59■□□□□ 0.09
MALAT1-208ENST00000616527 DSG3P32926 999 aa15.58■□□□□ 0.08
MALAT1-208ENST00000616527 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
MALAT1-208ENST00000616527 ABCB7O75027 752 aa15.39■□□□□ 0.05
MALAT1-208ENST00000616527 ATF5Q9Y2D1 282 aaPredicted RBP15.36■□□□□ 0.05
MALAT1-208ENST00000616527 ATXN8OSP0DMR3 200 aa15.32■□□□□ 0.04
MALAT1-208ENST00000616527 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
MALAT1-208ENST00000616527 POLA2Q14181 598 aa15.25■□□□□ 0.03
MALAT1-208ENST00000616527 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
MALAT1-208ENST00000616527 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
MALAT1-208ENST00000616527 ZBTB12Q9Y330 459 aaPredicted RBP15□□□□□ -0.01
MALAT1-208ENST00000616527 RBM42Q9BTD8 480 aaKnown RBP14.87□□□□□ -0.03
MALAT1-208ENST00000616527 FBLN2P98095 1184 aa14.77□□□□□ -0.05
MALAT1-208ENST00000616527 OSCARQ8IYS5 282 aa14.72□□□□□ -0.05
MALAT1-208ENST00000616527 MKRN4PQ13434 485 aaPredicted RBP14.68□□□□□ -0.06
MALAT1-208ENST00000616527 ZCCHC6Q5VYS8 1495 aaKnown RBP14.67□□□□□ -0.06
MALAT1-208ENST00000616527 AKT1S1Q96B36 256 aa14.61□□□□□ -0.07
MALAT1-208ENST00000616527 SPDYE2BA6NHP3 402 aa14.55□□□□□ -0.08
MALAT1-208ENST00000616527 SPDYE6P0CI01 402 aa14.55□□□□□ -0.08
MALAT1-208ENST00000616527 SPDYE2Q495Y8 402 aa14.55□□□□□ -0.08
MALAT1-208ENST00000616527 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
MALAT1-208ENST00000616527 REM2Q8IYK8 340 aaPredicted RBP14.45□□□□□ -0.1
MALAT1-208ENST00000616527 ZNF692Q9BU19 519 aaPredicted RBP14.43□□□□□ -0.1
MALAT1-208ENST00000616527 CHRDL2Q6WN34 429 aa14.39□□□□□ -0.11
MALAT1-208ENST00000616527 SSUH2Q9Y2M2 353 aa14.39□□□□□ -0.11
MALAT1-208ENST00000616527 POTEHQ6S545 545 aa14.36□□□□□ -0.11
MALAT1-208ENST00000616527 MYO15BQ96JP2 1530 aa14.32□□□□□ -0.12
MALAT1-208ENST00000616527 PITPNM1O00562 1244 aa14.28□□□□□ -0.12
MALAT1-208ENST00000616527 PABPN1Q86U42 306 aaKnown RBP eCLIP14.22□□□□□ -0.13
MALAT1-208ENST00000616527 SPDYE1Q8NFV5 336 aaPredicted RBP14.21□□□□□ -0.13
MALAT1-208ENST00000616527 SPDYE4A6NLX3 237 aa14.18□□□□□ -0.14
MALAT1-208ENST00000616527 DCAF8L2P0C7V8 631 aa14.14□□□□□ -0.15
MALAT1-208ENST00000616527 CLEC11AQ9Y240 323 aa14.14□□□□□ -0.15
MALAT1-208ENST00000616527 PIP4P2Q8N4L2 257 aa14.12□□□□□ -0.15
MALAT1-208ENST00000616527 FXR2P51116 673 aaKnown RBP eCLIP14.11□□□□□ -0.15
MALAT1-208ENST00000616527 SHROOM4Q9ULL8 1493 aa14.1□□□□□ -0.15
MALAT1-208ENST00000616527 NACADO15069 1562 aa14.07□□□□□ -0.16
MALAT1-208ENST00000616527 ABCC9O60706 1549 aa14.01□□□□□ -0.17
MALAT1-208ENST00000616527 PRR29P0C7W0 189 aa13.98□□□□□ -0.17
MALAT1-208ENST00000616527 STAG3Q9UJ98 1225 aa13.94□□□□□ -0.18
MALAT1-208ENST00000616527 PRKAR2AP13861 404 aaKnown RBP13.92□□□□□ -0.18
MALAT1-208ENST00000616527 PROM2Q8N271 834 aa13.91□□□□□ -0.18
MALAT1-208ENST00000616527 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
MALAT1-208ENST00000616527 FKBP8Q14318 412 aa13.83□□□□□ -0.2
MALAT1-208ENST00000616527 CHADLQ6NUI6 762 aa13.82□□□□□ -0.2
MALAT1-208ENST00000616527 HAX1O00165 279 aa13.77□□□□□ -0.21
MALAT1-208ENST00000616527 SCRIBQ14160 1630 aa13.75□□□□□ -0.21
MALAT1-208ENST00000616527 CREBZFQ9NS37 354 aa13.71□□□□□ -0.21
MALAT1-208ENST00000616527 SUPT5HO00267 1087 aaKnown RBP13.7□□□□□ -0.22
MALAT1-208ENST00000616527 FARP1Q9Y4F1 1045 aaPredicted RBP13.69□□□□□ -0.22
MALAT1-208ENST00000616527 C19orf67A6NJJ6 358 aa13.64□□□□□ -0.23
MALAT1-208ENST00000616527 SP7Q8TDD2 431 aaPredicted RBP13.63□□□□□ -0.23
MALAT1-208ENST00000616527 EVX2Q03828 476 aa13.61□□□□□ -0.23
MALAT1-208ENST00000616527 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
MALAT1-208ENST00000616527 MNX1P50219 401 aaPredicted RBP13.52□□□□□ -0.25
MALAT1-208ENST00000616527 CD44P16070 742 aaKnown RBP13.5□□□□□ -0.25
MALAT1-208ENST00000616527 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
MALAT1-208ENST00000616527 MIER1Q8N108 512 aa13.49□□□□□ -0.25
MALAT1-208ENST00000616527 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
MALAT1-208ENST00000616527 FBXO3Q9UK99 471 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms