RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KIF3BO15066 747 aa21.52■■□□□ 1.04
TRIM28-211ENST00000597968 CEP170BQ9Y4F5 1589 aaPredicted RBP21.52■■□□□ 1.04
TRIM28-211ENST00000597968 KDM5DQ9BY66 1539 aa21.51■■□□□ 1.03
TRIM28-211ENST00000597968 MAST1Q9Y2H9 1570 aa21.49■■□□□ 1.03
TRIM28-211ENST00000597968 PZPP20742 1482 aa21.49■■□□□ 1.03
TRIM28-211ENST00000597968 TCOF1Q13428 1488 aaKnown RBP21.49■■□□□ 1.03
TRIM28-211ENST00000597968 A2ML1A8K2U0 1454 aa21.48■■□□□ 1.03
TRIM28-211ENST00000597968 WASHC2CQ9Y4E1 1318 aa21.48■■□□□ 1.03
TRIM28-211ENST00000597968 LTBP4Q8N2S1 1624 aa21.47■■□□□ 1.03
TRIM28-211ENST00000597968 MYOM3Q5VTT5 1437 aa21.47■■□□□ 1.03
TRIM28-211ENST00000597968 KANK4Q5T7N3 995 aaPredicted RBP21.44■■□□□ 1.02
TRIM28-211ENST00000597968 TNRQ92752 1358 aa21.43■■□□□ 1.02
TRIM28-211ENST00000597968 APLP2Q06481 763 aa21.42■■□□□ 1.02
TRIM28-211ENST00000597968 NCKAP5LQ9HCH0 1330 aa21.42■■□□□ 1.02
TRIM28-211ENST00000597968 EIF2AK4Q9P2K8 1649 aaKnown RBP21.41■■□□□ 1.02
TRIM28-211ENST00000597968 NLRP1Q9C000 1473 aa21.41■■□□□ 1.02
TRIM28-211ENST00000597968 DNMT1P26358 1616 aaKnown RBP21.4■■□□□ 1.02
TRIM28-211ENST00000597968 RNF17Q9BXT8 1623 aaKnown RBP21.4■■□□□ 1.02
TRIM28-211ENST00000597968 ZC3H13Q5T200 1668 aaKnown RBP21.39■■□□□ 1.01
TRIM28-211ENST00000597968 THEMISQ8N1K5 641 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-211ENST00000597968 SHANK2Q9UPX8 1470 aa21.37■■□□□ 1.01
TRIM28-211ENST00000597968 DUOX2Q9NRD8 1548 aa21.36■■□□□ 1.01
TRIM28-211ENST00000597968 FBXO31Q5XUX0 539 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-211ENST00000597968 ABCC3O15438 1527 aa21.33■■□□□ 1
TRIM28-211ENST00000597968 ZNF335Q9H4Z2 1342 aaPredicted RBP21.32■■□□□ 1
TRIM28-211ENST00000597968 ERBINQ96RT1 1412 aa21.32■■□□□ 1
TRIM28-211ENST00000597968 ANKLE2Q86XL3 938 aa21.32■■□□□ 1
TRIM28-211ENST00000597968 SPATA31D1Q6ZQQ2 1576 aa21.31■■□□□ 1
TRIM28-211ENST00000597968 UGGT1Q9NYU2 1555 aa21.31■■□□□ 1
TRIM28-211ENST00000597968 MED14O60244 1454 aa21.29■■□□□ 1
TRIM28-211ENST00000597968 POLR1AO95602 1720 aaPredicted RBP21.29■■□□□ 1
TRIM28-211ENST00000597968 ABCC5O15440 1437 aa21.29■■□□□ 1
TRIM28-211ENST00000597968 ARHGAP31Q2M1Z3 1444 aa21.29■■□□□ 1
TRIM28-211ENST00000597968 KIF15Q9NS87 1388 aa21.28■■□□□ 1
TRIM28-211ENST00000597968 PTPN23Q9H3S7 1636 aa21.28■■□□□ 1
TRIM28-211ENST00000597968 DEPDC5O75140 1603 aa21.27■■□□□ 1
TRIM28-211ENST00000597968 MROH1Q8NDA8 1641 aa21.27■■□□□ 1
TRIM28-211ENST00000597968 CPS1P31327 1500 aa21.27■■□□□ 1
TRIM28-211ENST00000597968 FGD6Q6ZV73 1430 aa21.27■■□□□ 1
TRIM28-211ENST00000597968 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.26■□□□□ 0.992e-10■□□□□ 8.9
TRIM28-211ENST00000597968 NEURL4Q96JN8 1562 aa21.26■□□□□ 0.99
TRIM28-211ENST00000597968 ERVK-7P63135 1459 aa21.26■□□□□ 0.99
TRIM28-211ENST00000597968 PRDM15P57071 1507 aaPredicted RBP21.25■□□□□ 0.99
TRIM28-211ENST00000597968 CROCC2H7BZ55 1655 aa21.25■□□□□ 0.99
TRIM28-211ENST00000597968 DAPK1P53355 1430 aa21.25■□□□□ 0.99
TRIM28-211ENST00000597968 ANKRD30AQ9BXX3 1397 aa21.22■□□□□ 0.99
TRIM28-211ENST00000597968 NPHP4O75161 1426 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-211ENST00000597968 UBAP1LF5GYI3 381 aa21.21■□□□□ 0.99
TRIM28-211ENST00000597968 KANK1Q14678 1352 aa21.21■□□□□ 0.99
TRIM28-211ENST00000597968 RRP7BPQ9NSQ0 103 aa21.2■□□□□ 0.98
TRIM28-211ENST00000597968 LMTK2Q8IWU2 1503 aa21.17■□□□□ 0.98
TRIM28-211ENST00000597968 CEP152O94986 1710 aa21.16■□□□□ 0.98
TRIM28-211ENST00000597968 TOM1O60784 492 aa21.16■□□□□ 0.98
TRIM28-211ENST00000597968 VWDEQ8N2E2 1590 aa21.15■□□□□ 0.98
TRIM28-211ENST00000597968 ADGRL2O95490 1459 aa21.15■□□□□ 0.98
TRIM28-211ENST00000597968 DISP3Q9P2K9 1392 aa21.14■□□□□ 0.98
TRIM28-211ENST00000597968 IQGAP1P46940 1657 aa21.14■□□□□ 0.97
TRIM28-211ENST00000597968 SLIT1O75093 1534 aa21.14■□□□□ 0.97
TRIM28-211ENST00000597968 ARHGAP23Q9P227 1491 aa21.13■□□□□ 0.97
TRIM28-211ENST00000597968 UBR1Q8IWV7 1749 aa21.12■□□□□ 0.97
TRIM28-211ENST00000597968 SCAF11Q99590 1463 aaKnown RBP21.11■□□□□ 0.97
TRIM28-211ENST00000597968 KDM5AP29375 1690 aaKnown RBP21.1■□□□□ 0.97
TRIM28-211ENST00000597968 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.09■□□□□ 0.97
TRIM28-211ENST00000597968 EID1Q9Y6B2 187 aa21.09■□□□□ 0.97
TRIM28-211ENST00000597968 CHIC2Q9UKJ5 165 aa21.07■□□□□ 0.96
TRIM28-211ENST00000597968 TXNDC2Q86VQ3 553 aa21.06■□□□□ 0.96
TRIM28-211ENST00000597968 RPRD2Q5VT52 1461 aaKnown RBP21.06■□□□□ 0.96
TRIM28-211ENST00000597968 SYNMO15061 1565 aa21.06■□□□□ 0.96
TRIM28-211ENST00000597968 SLC52A1Q9NWF4 448 aa21.05■□□□□ 0.96
TRIM28-211ENST00000597968 TMEM2Q9UHN6 1383 aa21.05■□□□□ 0.96
TRIM28-211ENST00000597968 NOS1P29475 1434 aa21.04■□□□□ 0.96
TRIM28-211ENST00000597968 ANKRD50Q9ULJ7 1429 aa21.04■□□□□ 0.96
TRIM28-211ENST00000597968 EFCAB6Q5THR3 1501 aa21.04■□□□□ 0.96
TRIM28-211ENST00000597968 LTKP29376 864 aa21.03■□□□□ 0.96
TRIM28-211ENST00000597968 FAM50AQ14320 339 aaKnown RBP21.03■□□□□ 0.96
TRIM28-211ENST00000597968 STAG3Q9UJ98 1225 aa21.03■□□□□ 0.96
TRIM28-211ENST00000597968 LRRC7Q96NW7 1537 aa21.02■□□□□ 0.96
TRIM28-211ENST00000597968 PIK3C2BO00750 1634 aa21.01■□□□□ 0.95
TRIM28-211ENST00000597968 IDI1Q13907 227 aa21.01■□□□□ 0.95
TRIM28-211ENST00000597968 CFAP65Q6ZU64 1925 aaKnown RBP21■□□□□ 0.95
TRIM28-211ENST00000597968 ROCK1Q13464 1354 aa20.99■□□□□ 0.95
TRIM28-211ENST00000597968 PIP4K2BP78356 416 aa20.98■□□□□ 0.95
TRIM28-211ENST00000597968 SOCS7O14512 581 aa20.97■□□□□ 0.95
TRIM28-211ENST00000597968 ILDR2Q71H61 639 aa20.97■□□□□ 0.95
TRIM28-211ENST00000597968 SCAF1Q9H7N4 1312 aaKnown RBP20.97■□□□□ 0.95
TRIM28-211ENST00000597968 HSPA1LP34931 641 aa20.96■□□□□ 0.95
TRIM28-211ENST00000597968 ADGRB3O60242 1522 aa20.95■□□□□ 0.94
TRIM28-211ENST00000597968 STRCP1A6NGW2 1772 aa20.95■□□□□ 0.94
TRIM28-211ENST00000597968 HDGFP51858 240 aaKnown RBP20.94■□□□□ 0.94
TRIM28-211ENST00000597968 ALKQ9UM73 1620 aa20.93■□□□□ 0.94
TRIM28-211ENST00000597968 TET3O43151 1660 aa20.93■□□□□ 0.94
TRIM28-211ENST00000597968 UNC13BO14795 1591 aa20.91■□□□□ 0.94
TRIM28-211ENST00000597968 KCNA6P17658 529 aa20.9■□□□□ 0.94
TRIM28-211ENST00000597968 GCC2Q8IWJ2 1684 aa20.87■□□□□ 0.93
TRIM28-211ENST00000597968 NKTRP30414 1462 aaKnown RBP20.86■□□□□ 0.93
TRIM28-211ENST00000597968 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.85■□□□□ 0.93
TRIM28-211ENST00000597968 ZFYVE9O95405 1425 aa20.85■□□□□ 0.93
TRIM28-211ENST00000597968 PLEKHG1Q9ULL1 1385 aa20.85■□□□□ 0.93
TRIM28-211ENST00000597968 IQGAP3Q86VI3 1631 aa20.83■□□□□ 0.93
TRIM28-211ENST00000597968 FAM135BQ49AJ0 1406 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms