RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DNMT1P26358 1616 aaKnown RBP26.46■■□□□ 1.83
SHKBP1-215ENST00000597649 TNRQ92752 1358 aa26.43■■□□□ 1.82
SHKBP1-215ENST00000597649 WASHC2CQ9Y4E1 1318 aa26.4■■□□□ 1.82
SHKBP1-215ENST00000597649 CCDC141Q6ZP82 1450 aa26.39■■□□□ 1.82
SHKBP1-215ENST00000597649 PZPP20742 1482 aa26.38■■□□□ 1.81
SHKBP1-215ENST00000597649 NCOA2Q15596 1464 aa26.38■■□□□ 1.81
SHKBP1-215ENST00000597649 RSPH4AQ5TD94 716 aa26.38■■□□□ 1.81
SHKBP1-215ENST00000597649 CAMSAP2Q08AD1 1489 aa26.37■■□□□ 1.81
SHKBP1-215ENST00000597649 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.36■■□□□ 1.81
SHKBP1-215ENST00000597649 NEURL4Q96JN8 1562 aa26.36■■□□□ 1.81
SHKBP1-215ENST00000597649 KDM5DQ9BY66 1539 aa26.34■■□□□ 1.81
SHKBP1-215ENST00000597649 MIA2Q96PC5 1412 aa26.34■■□□□ 1.81
SHKBP1-215ENST00000597649 HSPA1LP34931 641 aa26.34■■□□□ 1.81
SHKBP1-215ENST00000597649 PIP4K2BP78356 416 aa26.34■■□□□ 1.81
SHKBP1-215ENST00000597649 ANKLE2Q86XL3 938 aa26.34■■□□□ 1.81
SHKBP1-215ENST00000597649 SHANK2Q9UPX8 1470 aa26.33■■□□□ 1.81
SHKBP1-215ENST00000597649 THEMISQ8N1K5 641 aaPredicted RBP26.32■■□□□ 1.8
SHKBP1-215ENST00000597649 TSPY4P0CV99 314 aa26.3■■□□□ 1.8
SHKBP1-215ENST00000597649 TSPY10P0CW01 314 aa26.3■■□□□ 1.8
SHKBP1-215ENST00000597649 SCAF1Q9H7N4 1312 aaKnown RBP26.3■■□□□ 1.8
SHKBP1-215ENST00000597649 TOM1O60784 492 aa26.29■■□□□ 1.8
SHKBP1-215ENST00000597649 FAM135AQ9P2D6 1515 aa26.29■■□□□ 1.8
SHKBP1-215ENST00000597649 CPS1P31327 1500 aa26.28■■□□□ 1.8
SHKBP1-215ENST00000597649 POLR1AO95602 1720 aaPredicted RBP26.26■■□□□ 1.79
SHKBP1-215ENST00000597649 NLRP1Q9C000 1473 aa26.25■■□□□ 1.79
SHKBP1-215ENST00000597649 ARHGEF5Q12774 1597 aa26.24■■□□□ 1.79
SHKBP1-215ENST00000597649 VWDEQ8N2E2 1590 aa26.24■■□□□ 1.79
SHKBP1-215ENST00000597649 UGGT1Q9NYU2 1555 aa26.24■■□□□ 1.79
SHKBP1-215ENST00000597649 MED14O60244 1454 aa26.23■■□□□ 1.79
SHKBP1-215ENST00000597649 NPHP4O75161 1426 aaPredicted RBP26.23■■□□□ 1.79
SHKBP1-215ENST00000597649 KANK4Q5T7N3 995 aaPredicted RBP26.19■■□□□ 1.78
SHKBP1-215ENST00000597649 LRRC9Q6ZRR7 1453 aa26.18■■□□□ 1.78
SHKBP1-215ENST00000597649 ALKQ9UM73 1620 aa26.18■■□□□ 1.78
SHKBP1-215ENST00000597649 ABCC3O15438 1527 aa26.18■■□□□ 1.78
SHKBP1-215ENST00000597649 DEPDC5O75140 1603 aa26.17■■□□□ 1.78
SHKBP1-215ENST00000597649 LOC105371045A0A1W2PR82 267 aa26.16■■□□□ 1.78
SHKBP1-215ENST00000597649 RNF17Q9BXT8 1623 aaKnown RBP26.14■■□□□ 1.78
SHKBP1-215ENST00000597649 MED1Q15648 1581 aaPredicted RBP26.14■■□□□ 1.78
SHKBP1-215ENST00000597649 ERVK-7P63135 1459 aa26.12■■□□□ 1.77
SHKBP1-215ENST00000597649 VPS8Q8N3P4 1428 aa26.12■■□□□ 1.77
SHKBP1-215ENST00000597649 MAST1Q9Y2H9 1570 aa26.12■■□□□ 1.77
SHKBP1-215ENST00000597649 MROH1Q8NDA8 1641 aa26.1■■□□□ 1.77
SHKBP1-215ENST00000597649 LRRC7Q96NW7 1537 aa26.09■■□□□ 1.77
SHKBP1-215ENST00000597649 STRCP1A6NGW2 1772 aa26.09■■□□□ 1.77
SHKBP1-215ENST00000597649 IQGAP1P46940 1657 aa26.09■■□□□ 1.77
SHKBP1-215ENST00000597649 LTKP29376 864 aa26.08■■□□□ 1.77
SHKBP1-215ENST00000597649 SENP3Q9H4L4 574 aaPredicted RBP26.07■■□□□ 1.76
SHKBP1-215ENST00000597649 MYOM3Q5VTT5 1437 aa26.05■■□□□ 1.76
SHKBP1-215ENST00000597649 ZC3H13Q5T200 1668 aaKnown RBP26.04■■□□□ 1.76
SHKBP1-215ENST00000597649 EIF2AK4Q9P2K8 1649 aaKnown RBP26.03■■□□□ 1.76
SHKBP1-215ENST00000597649 CFAP65Q6ZU64 1925 aaKnown RBP26.03■■□□□ 1.76
SHKBP1-215ENST00000597649 TXNDC2Q86VQ3 553 aa26.02■■□□□ 1.76
SHKBP1-215ENST00000597649 MAP3K1Q13233 1512 aa26■■□□□ 1.75
SHKBP1-215ENST00000597649 DUOX2Q9NRD8 1548 aa26■■□□□ 1.75
SHKBP1-215ENST00000597649 SCAF11Q99590 1463 aaKnown RBP26■■□□□ 1.75
SHKBP1-215ENST00000597649 RRP7BPQ9NSQ0 103 aa26■■□□□ 1.75
SHKBP1-215ENST00000597649 CEP152O94986 1710 aa26■■□□□ 1.75
SHKBP1-215ENST00000597649 UBR1Q8IWV7 1749 aa26■■□□□ 1.75
SHKBP1-215ENST00000597649 ARHGAP23Q9P227 1491 aa25.98■■□□□ 1.75
SHKBP1-215ENST00000597649 KIF15Q9NS87 1388 aa25.98■■□□□ 1.75
SHKBP1-215ENST00000597649 PHF23Q9BUL5 403 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-215ENST00000597649 ABCC5O15440 1437 aa25.97■■□□□ 1.75
SHKBP1-215ENST00000597649 ARHGAP31Q2M1Z3 1444 aa25.97■■□□□ 1.75
SHKBP1-215ENST00000597649 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.96■■□□□ 1.75
SHKBP1-215ENST00000597649 SLIT1O75093 1534 aa25.95■■□□□ 1.74
SHKBP1-215ENST00000597649 SYNMO15061 1565 aa25.92■■□□□ 1.74
SHKBP1-215ENST00000597649 EID1Q9Y6B2 187 aa25.92■■□□□ 1.74
SHKBP1-215ENST00000597649 PRDM15P57071 1507 aaPredicted RBP25.91■■□□□ 1.74
SHKBP1-215ENST00000597649 ERBINQ96RT1 1412 aa25.9■■□□□ 1.74
SHKBP1-215ENST00000597649 IDI1Q13907 227 aa25.89■■□□□ 1.74
SHKBP1-215ENST00000597649 RGS17Q9UGC6 210 aaPredicted RBP25.89■■□□□ 1.74
SHKBP1-215ENST00000597649 TMEM2Q9UHN6 1383 aa25.89■■□□□ 1.74
SHKBP1-215ENST00000597649 CHIC2Q9UKJ5 165 aa25.86■■□□□ 1.73
SHKBP1-215ENST00000597649 STAG3Q9UJ98 1225 aa25.85■■□□□ 1.73
SHKBP1-215ENST00000597649 DAPK1P53355 1430 aa25.85■■□□□ 1.73
SHKBP1-215ENST00000597649 XIRP1Q702N8 1843 aaKnown RBP25.84■■□□□ 1.73
SHKBP1-215ENST00000597649 PIK3C2BO00750 1634 aa25.84■■□□□ 1.73
SHKBP1-215ENST00000597649 PTPN23Q9H3S7 1636 aa25.83■■□□□ 1.73
SHKBP1-215ENST00000597649 KANK1Q14678 1352 aa25.82■■□□□ 1.72
SHKBP1-215ENST00000597649 KCNA6P17658 529 aa25.81■■□□□ 1.72
SHKBP1-215ENST00000597649 RBM33Q96EV2 1170 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-215ENST00000597649 SLC26A8Q96RN1 970 aa25.81■■□□□ 1.72
SHKBP1-215ENST00000597649 TMEM94Q12767 1356 aa25.81■■□□□ 1.72
SHKBP1-215ENST00000597649 CROCC2H7BZ55 1655 aa25.8■■□□□ 1.72
SHKBP1-215ENST00000597649 FAM135BQ49AJ0 1406 aa25.8■■□□□ 1.72
SHKBP1-215ENST00000597649 FGD6Q6ZV73 1430 aa25.79■■□□□ 1.72
SHKBP1-215ENST00000597649 LMTK2Q8IWU2 1503 aa25.78■■□□□ 1.72
SHKBP1-215ENST00000597649 ANKRD30AQ9BXX3 1397 aa25.77■■□□□ 1.72
SHKBP1-215ENST00000597649 EFCAB6Q5THR3 1501 aa25.77■■□□□ 1.72
SHKBP1-215ENST00000597649 APLP2Q06481 763 aa25.76■■□□□ 1.71
SHKBP1-215ENST00000597649 PROSER2Q86WR7 435 aaPredicted RBP25.76■■□□□ 1.71
SHKBP1-215ENST00000597649 TET3O43151 1660 aa25.76■■□□□ 1.71
SHKBP1-215ENST00000597649 NOS1P29475 1434 aa25.75■■□□□ 1.71
SHKBP1-215ENST00000597649 POTEAQ6S8J7 498 aa25.71■■□□□ 1.71
SHKBP1-215ENST00000597649 KDM5AP29375 1690 aaKnown RBP25.7■■□□□ 1.7
SHKBP1-215ENST00000597649 SLC52A1Q9NWF4 448 aa25.69■■□□□ 1.7
SHKBP1-215ENST00000597649 ADGRB3O60242 1522 aa25.65■■□□□ 1.7
SHKBP1-215ENST00000597649 BCANQ96GW7 911 aa25.65■■□□□ 1.7
SHKBP1-215ENST00000597649 ADGRL2O95490 1459 aa25.63■■□□□ 1.69
SHKBP1-215ENST00000597649 ROBO1Q9Y6N7 1651 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms