RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 NISCHQ9Y2I1 1504 aa41.69■■■■■ 4.27
SHKBP1-215ENST00000597649 ABCC9O60706 1549 aa37.88■■■■□ 3.65
SHKBP1-215ENST00000597649 CCDC180Q9P1Z9 1646 aa37.39■■■■□ 3.58
SHKBP1-215ENST00000597649 DNAJC5BQ9UF47 199 aa35.99■■■■□ 3.35
SHKBP1-215ENST00000597649 RB1CC1Q8TDY2 1594 aa35.8■■■■□ 3.32
SHKBP1-215ENST00000597649 NACADO15069 1562 aa35.51■■■■□ 3.27
SHKBP1-215ENST00000597649 DCAF8L2P0C7V8 631 aa35.43■■■■□ 3.26
SHKBP1-215ENST00000597649 PABPN1Q86U42 306 aaKnown RBP eCLIP35.32■■■■□ 3.24
SHKBP1-215ENST00000597649 UNC13AQ9UPW8 1703 aa34.97■■■■□ 3.19
SHKBP1-215ENST00000597649 MYO15BQ96JP2 1530 aa34.92■■■■□ 3.18
SHKBP1-215ENST00000597649 BICRAQ9NZM4 1560 aa34.87■■■■□ 3.17
SHKBP1-215ENST00000597649 ZCCHC6Q5VYS8 1495 aaKnown RBP34.46■■■■□ 3.11
SHKBP1-215ENST00000597649 DCAF1Q9Y4B6 1507 aa34.37■■■■□ 3.09
SHKBP1-215ENST00000597649 SHROOM4Q9ULL8 1493 aa34.23■■■■□ 3.07
SHKBP1-215ENST00000597649 SCRIBQ14160 1630 aa34.15■■■■□ 3.06
SHKBP1-215ENST00000597649 CC2D2AQ9P2K1 1620 aa34.14■■■■□ 3.06
SHKBP1-215ENST00000597649 CECR2Q9BXF3 1484 aa34.14■■■■□ 3.06
SHKBP1-215ENST00000597649 EIF4G1Q04637 1599 aaKnown RBP33.99■■■■□ 3.03
SHKBP1-215ENST00000597649 DNAJC5Q9H3Z4 198 aa33.18■■■□□ 2.9
SHKBP1-215ENST00000597649 NCAPD3P42695 1498 aa32.86■■■□□ 2.85
SHKBP1-215ENST00000597649 ATAD2BQ9ULI0 1458 aa32.73■■■□□ 2.83
SHKBP1-215ENST00000597649 CUX2O14529 1486 aa32.69■■■□□ 2.82
SHKBP1-215ENST00000597649 ERCC6Q03468 1493 aa32.66■■■□□ 2.82
SHKBP1-215ENST00000597649 SMARCA4P51532 1647 aa32.53■■■□□ 2.8
SHKBP1-215ENST00000597649 SMARCA2P51531 1590 aa32.52■■■□□ 2.8
SHKBP1-215ENST00000597649 HMGXB3Q12766 1538 aa32.5■■■□□ 2.79
SHKBP1-215ENST00000597649 NESP48681 1621 aa32.48■■■□□ 2.79
SHKBP1-215ENST00000597649 BAZ1BQ9UIG0 1483 aaKnown RBP32.33■■■□□ 2.77
SHKBP1-215ENST00000597649 BAZ1AQ9NRL2 1556 aaPredicted RBP32.32■■■□□ 2.76
SHKBP1-215ENST00000597649 PEG3Q9GZU2 1588 aa32.23■■■□□ 2.75
SHKBP1-215ENST00000597649 MROH2BQ7Z745 1585 aa32.16■■■□□ 2.74
SHKBP1-215ENST00000597649 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
SHKBP1-215ENST00000597649 LAMC3Q9Y6N6 1575 aa32.07■■■□□ 2.72
SHKBP1-215ENST00000597649 PDS5BQ9NTI5 1447 aa31.96■■■□□ 2.71
SHKBP1-215ENST00000597649 KIF21AQ7Z4S6 1674 aa31.91■■■□□ 2.7
SHKBP1-215ENST00000597649 CADPSQ9ULU8 1353 aa31.87■■■□□ 2.69
SHKBP1-215ENST00000597649 WIZO95785 1651 aa31.71■■■□□ 2.67
SHKBP1-215ENST00000597649 MRC2Q9UBG0 1479 aa31.69■■■□□ 2.66
SHKBP1-215ENST00000597649 WDR62O43379 1518 aa31.6■■■□□ 2.65
SHKBP1-215ENST00000597649 TRIM41Q8WV44 630 aa31.57■■■□□ 2.64
SHKBP1-215ENST00000597649 CEP164Q9UPV0 1460 aa31.48■■■□□ 2.63
SHKBP1-215ENST00000597649 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
SHKBP1-215ENST00000597649 CFTRP13569 1480 aa31.41■■■□□ 2.62
SHKBP1-215ENST00000597649 RSF1Q96T23 1441 aaPredicted RBP31.41■■■□□ 2.62
SHKBP1-215ENST00000597649 OSCARQ8IYS5 282 aa31.26■■■□□ 2.59
SHKBP1-215ENST00000597649 TOP2AP11388 1531 aaKnown RBP31.25■■■□□ 2.59
SHKBP1-215ENST00000597649 URB2Q14146 1524 aaKnown RBP31.25■■■□□ 2.59
SHKBP1-215ENST00000597649 CCDC88BA6NC98 1476 aa31■■■□□ 2.55
SHKBP1-215ENST00000597649 ZNF608Q9ULD9 1512 aaPredicted RBP30.95■■■□□ 2.55
SHKBP1-215ENST00000597649 IFT140Q96RY7 1462 aa30.89■■■□□ 2.53
SHKBP1-215ENST00000597649 PRDM2Q13029 1718 aa30.87■■■□□ 2.53
SHKBP1-215ENST00000597649 TOPBP1Q92547 1522 aa30.83■■■□□ 2.53
SHKBP1-215ENST00000597649 RIMBP3CA6NJZ7 1639 aa30.79■■■□□ 2.52
SHKBP1-215ENST00000597649 RIMBP3BA6NNM3 1639 aa30.79■■■□□ 2.52
SHKBP1-215ENST00000597649 RIMBP3Q9UFD9 1639 aa30.79■■■□□ 2.52
SHKBP1-215ENST00000597649 ABCC8Q09428 1581 aa30.69■■■□□ 2.5
SHKBP1-215ENST00000597649 ARHGEF11O15085 1522 aa30.68■■■□□ 2.5
SHKBP1-215ENST00000597649 AQRO60306 1485 aaKnown RBP eCLIP30.65■■■□□ 2.5
SHKBP1-215ENST00000597649 DNMBPQ6XZF7 1577 aa30.64■■■□□ 2.5
SHKBP1-215ENST00000597649 EIF4G3O43432 1585 aaKnown RBP30.63■■■□□ 2.49
SHKBP1-215ENST00000597649 CYB5RLQ6IPT4 315 aa30.59■■■□□ 2.49
SHKBP1-215ENST00000597649 TARBP1Q13395 1621 aaKnown RBP30.56■■■□□ 2.48
SHKBP1-215ENST00000597649 POLA1P09884 1462 aaPredicted RBP30.51■■■□□ 2.48
SHKBP1-215ENST00000597649 FBLN2P98095 1184 aa30.5■■■□□ 2.47
SHKBP1-215ENST00000597649 RAD54L2Q9Y4B4 1467 aa30.46■■■□□ 2.47
SHKBP1-215ENST00000597649 CHD1O14646 1710 aa30.44■■■□□ 2.46
SHKBP1-215ENST00000597649 TDRD9Q8NDG6 1382 aaKnown RBP30.42■■■□□ 2.46
SHKBP1-215ENST00000597649 SOGA1O94964 1423 aa30.4■■■□□ 2.46
SHKBP1-215ENST00000597649 ARAP1Q96P48 1450 aa30.4■■■□□ 2.46
SHKBP1-215ENST00000597649 TRHP20396 242 aaPredicted RBP30.3■■■□□ 2.44
SHKBP1-215ENST00000597649 FGD5Q6ZNL6 1462 aa30.26■■■□□ 2.44
SHKBP1-215ENST00000597649 SNAPC4Q5SXM2 1469 aa30.25■■■□□ 2.43
SHKBP1-215ENST00000597649 CHMP7Q8WUX9 453 aaPredicted RBP30.21■■■□□ 2.43
SHKBP1-215ENST00000597649 CUX1P39880 1505 aa30.21■■■□□ 2.43
SHKBP1-215ENST00000597649 CLASP1Q7Z460 1538 aa30.16■■■□□ 2.42
SHKBP1-215ENST00000597649 WDR97A6NE52 1622 aa30.12■■■□□ 2.41
SHKBP1-215ENST00000597649 GRIN2BQ13224 1484 aa30.12■■■□□ 2.41
SHKBP1-215ENST00000597649 MAGI1Q96QZ7 1491 aaPredicted RBP30.12■■■□□ 2.41
SHKBP1-215ENST00000597649 SYNJ1O43426 1573 aa30.05■■■□□ 2.4
SHKBP1-215ENST00000597649 SYNJ2O15056 1496 aa30.05■■■□□ 2.4
SHKBP1-215ENST00000597649 GAPVD1Q14C86 1478 aa29.99■■■□□ 2.39
SHKBP1-215ENST00000597649 ABCA10Q8WWZ4 1543 aa29.9■■■□□ 2.38
SHKBP1-215ENST00000597649 PBRM1Q86U86 1689 aa29.87■■■□□ 2.37
SHKBP1-215ENST00000597649 ABCA5Q8WWZ7 1642 aa29.83■■■□□ 2.37
SHKBP1-215ENST00000597649 SUPT5HO00267 1087 aaKnown RBP29.83■■■□□ 2.37
SHKBP1-215ENST00000597649 ERCC6L2Q5T890 1561 aa29.74■■■□□ 2.35
SHKBP1-215ENST00000597649 WRNQ14191 1432 aaPredicted RBP eCLIP29.73■■■□□ 2.35
SHKBP1-215ENST00000597649 GRIN2AQ12879 1464 aa29.73■■■□□ 2.35
SHKBP1-215ENST00000597649 NUP160Q12769 1436 aa29.67■■■□□ 2.34
SHKBP1-215ENST00000597649 CEP170Q5SW79 1584 aa29.64■■■□□ 2.34
SHKBP1-215ENST00000597649 ADAMTS12P58397 1594 aa29.63■■■□□ 2.33
SHKBP1-215ENST00000597649 AEBP2Q6ZN18 517 aaPredicted RBP29.6■■■□□ 2.33
SHKBP1-215ENST00000597649 FHAD1B1AJZ9 1412 aa29.59■■■□□ 2.33
SHKBP1-215ENST00000597649 TOP2BQ02880 1626 aa29.58■■■□□ 2.33
SHKBP1-215ENST00000597649 BIVM-ERCC5R4GMW8 1640 aa29.55■■■□□ 2.32
SHKBP1-215ENST00000597649 SHROOM2Q13796 1616 aa29.5■■■□□ 2.31
SHKBP1-215ENST00000597649 ERICH3Q5RHP9 1530 aa29.48■■■□□ 2.31
SHKBP1-215ENST00000597649 JPH4Q96JJ6 628 aa29.44■■■□□ 2.3
SHKBP1-215ENST00000597649 PRG4Q92954 1404 aaPredicted RBP29.43■■■□□ 2.3
SHKBP1-215ENST00000597649 KIF13AQ9H1H9 1805 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 392.5 ms