RNA–Protein interactions for RNA: ENST00000575934.5

ABR-233, Transcript of ABR, RhoGEF and GTPase activating protein, human

TSL 3

Gene ABR, Length 689 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABR-233	ENST00000575934	KIF3B	O15066	747 aa		32.24	■■■□□ 2.75
ABR-233	ENST00000575934	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	32.24	■■■□□ 2.75
ABR-233	ENST00000575934	KDM5D	Q9BY66	1539 aa		32.23	■■■□□ 2.75
ABR-233	ENST00000575934	RNF17	Q9BXT8	1623 aa	Known RBP	32.18	■■■□□ 2.74
ABR-233	ENST00000575934	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.16	■■■□□ 2.74
ABR-233	ENST00000575934	PZP	P20742	1482 aa		32.15	■■■□□ 2.74
ABR-233	ENST00000575934	PLA2R1	Q13018	1463 aa		32.15	■■■□□ 2.74
ABR-233	ENST00000575934	CROCC2	H7BZ55	1655 aa		32.14	■■■□□ 2.74
ABR-233	ENST00000575934	APLP2	Q06481	763 aa		32.13	■■■□□ 2.73
ABR-233	ENST00000575934	PTPN23	Q9H3S7	1636 aa		32.13	■■■□□ 2.73
ABR-233	ENST00000575934	A2ML1	A8K2U0	1454 aa		32.1	■■■□□ 2.73
ABR-233	ENST00000575934	ZC3H13	Q5T200	1668 aa	Known RBP	32.1	■■■□□ 2.73
ABR-233	ENST00000575934	DNMT1	P26358	1616 aa	Known RBP	32.1	■■■□□ 2.73
ABR-233	ENST00000575934	TCOF1	Q13428	1488 aa	Known RBP	32.09	■■■□□ 2.73
ABR-233	ENST00000575934	LTBP4	Q8N2S1	1624 aa		32.08	■■■□□ 2.73
ABR-233	ENST00000575934	WASHC2C	Q9Y4E1	1318 aa		32.08	■■■□□ 2.73
ABR-233	ENST00000575934	SHANK2	Q9UPX8	1470 aa		32.07	■■■□□ 2.72
ABR-233	ENST00000575934	MROH1	Q8NDA8	1641 aa		32.07	■■■□□ 2.72
ABR-233	ENST00000575934	TNR	Q92752	1358 aa		32.06	■■■□□ 2.72
ABR-233	ENST00000575934	DUOX2	Q9NRD8	1548 aa		32.05	■■■□□ 2.72
ABR-233	ENST00000575934	NCKAP5L	Q9HCH0	1330 aa		32.04	■■■□□ 2.72
ABR-233	ENST00000575934	ABCC3	O15438	1527 aa		32.04	■■■□□ 2.72
ABR-233	ENST00000575934	ABCC5	O15440	1437 aa		32.03	■■■□□ 2.72
ABR-233	ENST00000575934	PKD2	Q13563	968 aa		32.03	■■■□□ 2.72
ABR-233	ENST00000575934	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.03	■■■□□ 2.72
ABR-233	ENST00000575934	FGD6	Q6ZV73	1430 aa		32.02	■■■□□ 2.72
ABR-233	ENST00000575934	CEP152	O94986	1710 aa		32	■■■□□ 2.71
ABR-233	ENST00000575934	POLR1A	O95602	1720 aa	Predicted RBP	32	■■■□□ 2.71
ABR-233	ENST00000575934	DAPK1	P53355	1430 aa		31.98	■■■□□ 2.71
ABR-233	ENST00000575934	IQSEC2	Q5JU85	1478 aa		31.96	■■■□□ 2.71
ABR-233	ENST00000575934	NLRP1	Q9C000	1473 aa		31.96	■■■□□ 2.71
ABR-233	ENST00000575934	KIF15	Q9NS87	1388 aa		31.95	■■■□□ 2.71
ABR-233	ENST00000575934	SPATA31D1	Q6ZQQ2	1576 aa		31.95	■■■□□ 2.71
ABR-233	ENST00000575934	CFAP65	Q6ZU64	1925 aa	Known RBP	31.94	■■■□□ 2.7
ABR-233	ENST00000575934	ERBIN	Q96RT1	1412 aa		31.93	■■■□□ 2.7
ABR-233	ENST00000575934	PRDM15	P57071	1507 aa	Predicted RBP	31.93	■■■□□ 2.7
ABR-233	ENST00000575934	NEURL4	Q96JN8	1562 aa		31.91	■■■□□ 2.7
ABR-233	ENST00000575934	DEPDC5	O75140	1603 aa		31.9	■■■□□ 2.7
ABR-233	ENST00000575934	ERVK-7	P63135	1459 aa		31.89	■■■□□ 2.7
ABR-233	ENST00000575934	UGGT1	Q9NYU2	1555 aa		31.89	■■■□□ 2.7
ABR-233	ENST00000575934	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.87	■■■□□ 2.69
ABR-233	ENST00000575934	RRP7BP	Q9NSQ0	103 aa		31.85	■■■□□ 2.69
ABR-233	ENST00000575934	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.81	■■■□□ 2.68
ABR-233	ENST00000575934	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.81	■■■□□ 2.68
ABR-233	ENST00000575934	ANKRD30A	Q9BXX3	1397 aa		31.81	■■■□□ 2.68
ABR-233	ENST00000575934	ARHGAP31	Q2M1Z3	1444 aa		31.8	■■■□□ 2.68
ABR-233	ENST00000575934	ADGRL2	O95490	1459 aa		31.78	■■■□□ 2.68
ABR-233	ENST00000575934	UBR1	Q8IWV7	1749 aa		31.78	■■■□□ 2.68
ABR-233	ENST00000575934	ANKLE2	Q86XL3	938 aa		31.76	■■■□□ 2.67
ABR-233	ENST00000575934	MED14	O60244	1454 aa		31.76	■■■□□ 2.67
ABR-233	ENST00000575934	CHIC2	Q9UKJ5	165 aa		31.75	■■■□□ 2.67
ABR-233	ENST00000575934	VWDE	Q8N2E2	1590 aa		31.75	■■■□□ 2.67
ABR-233	ENST00000575934	IQGAP1	P46940	1657 aa		31.73	■■■□□ 2.67
ABR-233	ENST00000575934	LMTK2	Q8IWU2	1503 aa		31.72	■■■□□ 2.67
ABR-233	ENST00000575934	NPHP4	O75161	1426 aa	Predicted RBP	31.71	■■■□□ 2.67
ABR-233	ENST00000575934	KANK1	Q14678	1352 aa		31.7	■■■□□ 2.67
ABR-233	ENST00000575934	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.69	■■■□□ 2.66
ABR-233	ENST00000575934	FAM50A	Q14320	339 aa	Known RBP	31.68	■■■□□ 2.66
ABR-233	ENST00000575934	CPS1	P31327	1500 aa		31.68	■■■□□ 2.66
ABR-233	ENST00000575934	PIK3C2B	O00750	1634 aa		31.64	■■■□□ 2.65
ABR-233	ENST00000575934	SLIT1	O75093	1534 aa		31.62	■■■□□ 2.65
ABR-233	ENST00000575934	EFCAB6	Q5THR3	1501 aa		31.62	■■■□□ 2.65
ABR-233	ENST00000575934	ARHGAP23	Q9P227	1491 aa		31.62	■■■□□ 2.65
ABR-233	ENST00000575934	KDM5A	P29375	1690 aa	Known RBP	31.61	■■■□□ 2.65
ABR-233	ENST00000575934	ANKRD50	Q9ULJ7	1429 aa		31.6	■■■□□ 2.65
ABR-233	ENST00000575934	UBAP1L	F5GYI3	381 aa		31.58	■■■□□ 2.65
ABR-233	ENST00000575934	STRCP1	A6NGW2	1772 aa		31.58	■■■□□ 2.65
ABR-233	ENST00000575934	SCAF11	Q99590	1463 aa	Known RBP	31.58	■■■□□ 2.65
ABR-233	ENST00000575934	SYNM	O15061	1565 aa		31.57	■■■□□ 2.64
ABR-233	ENST00000575934	NOS1	P29475	1434 aa		31.54	■■■□□ 2.64
ABR-233	ENST00000575934	TET3	O43151	1660 aa		31.52	■■■□□ 2.64
ABR-233	ENST00000575934	UNC13B	O14795	1591 aa		31.51	■■■□□ 2.64
ABR-233	ENST00000575934	GCC2	Q8IWJ2	1684 aa		31.49	■■■□□ 2.63
ABR-233	ENST00000575934	RPRD2	Q5VT52	1461 aa	Known RBP	31.49	■■■□□ 2.63
ABR-233	ENST00000575934	LTK	P29376	864 aa		31.49	■■■□□ 2.63
ABR-233	ENST00000575934	ROCK1	Q13464	1354 aa		31.48	■■■□□ 2.63
ABR-233	ENST00000575934	TMEM2	Q9UHN6	1383 aa		31.47	■■■□□ 2.63
ABR-233	ENST00000575934	IDI1	Q13907	227 aa		31.46	■■■□□ 2.63
ABR-233	ENST00000575934	TXNDC2	Q86VQ3	553 aa		31.46	■■■□□ 2.63
ABR-233	ENST00000575934	ADGRB3	O60242	1522 aa		31.45	■■■□□ 2.63
ABR-233	ENST00000575934	STAG3	Q9UJ98	1225 aa		31.42	■■■□□ 2.62
ABR-233	ENST00000575934	EID1	Q9Y6B2	187 aa		31.42	■■■□□ 2.62
ABR-233	ENST00000575934	LRRC7	Q96NW7	1537 aa		31.42	■■■□□ 2.62
ABR-233	ENST00000575934	ALK	Q9UM73	1620 aa		31.41	■■■□□ 2.62
ABR-233	ENST00000575934	MYO5B	Q9ULV0	1848 aa		31.4	■■■□□ 2.62
ABR-233	ENST00000575934	TOM1	O60784	492 aa		31.4	■■■□□ 2.62
ABR-233	ENST00000575934	DISP3	Q9P2K9	1392 aa		31.39	■■■□□ 2.62
ABR-233	ENST00000575934	IQGAP3	Q86VI3	1631 aa		31.38	■■■□□ 2.61
ABR-233	ENST00000575934	SLC52A1	Q9NWF4	448 aa		31.38	■■■□□ 2.61
ABR-233	ENST00000575934		E9PCH4	1651 aa		31.38	■■■□□ 2.61
ABR-233	ENST00000575934	XIRP1	Q702N8	1843 aa	Known RBP	31.35	■■■□□ 2.61
ABR-233	ENST00000575934	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.35	■■■□□ 2.61
ABR-233	ENST00000575934	TMEM131L	A2VDJ0	1609 aa		31.31	■■■□□ 2.6
ABR-233	ENST00000575934	PIP4K2B	P78356	416 aa		31.31	■■■□□ 2.6
ABR-233	ENST00000575934	SCAF1	Q9H7N4	1312 aa	Known RBP	31.3	■■■□□ 2.6
ABR-233	ENST00000575934	ITGAE	P38570	1179 aa		31.27	■■■□□ 2.6
ABR-233	ENST00000575934	ZFYVE9	O95405	1425 aa		31.25	■■■□□ 2.59
ABR-233	ENST00000575934	HSPA1L	P34931	641 aa		31.25	■■■□□ 2.59
ABR-233	ENST00000575934	RRBP1	Q9P2E9	1410 aa	Known RBP	31.24	■■■□□ 2.59
ABR-233	ENST00000575934	NUP155	O75694	1391 aa		31.22	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms