RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 A2ML1A8K2U0 1454 aa26.77■■□□□ 1.88
CLN3-217ENST00000565354 DNMT1P26358 1616 aaKnown RBP26.76■■□□□ 1.87
CLN3-217ENST00000565354 POLR1AO95602 1720 aaPredicted RBP26.73■■□□□ 1.87
CLN3-217ENST00000565354 ZNF644Q9H582 1327 aaPredicted RBP26.71■■□□□ 1.87
CLN3-217ENST00000565354 MBD5Q9P267 1494 aa26.71■■□□□ 1.87
CLN3-217ENST00000565354 RTEL1-TNFRSF6BF6WH68 1400 aa26.7■■□□□ 1.86
CLN3-217ENST00000565354 DHX29Q7Z478 1369 aaKnown RBP26.68■■□□□ 1.86
CLN3-217ENST00000565354 NEURL4Q96JN8 1562 aa26.67■■□□□ 1.86
CLN3-217ENST00000565354 CPS1P31327 1500 aa26.66■■□□□ 1.86
CLN3-217ENST00000565354 MYOM3Q5VTT5 1437 aa26.65■■□□□ 1.86
CLN3-217ENST00000565354 TNRQ92752 1358 aa26.65■■□□□ 1.86
CLN3-217ENST00000565354 HSPA1LP34931 641 aa26.63■■□□□ 1.85
CLN3-217ENST00000565354 FBXO31Q5XUX0 539 aaPredicted RBP26.63■■□□□ 1.85
CLN3-217ENST00000565354 FAM135AQ9P2D6 1515 aa26.63■■□□□ 1.85
CLN3-217ENST00000565354 SCAF1Q9H7N4 1312 aaKnown RBP26.63■■□□□ 1.85
CLN3-217ENST00000565354 PZPP20742 1482 aa26.62■■□□□ 1.85
CLN3-217ENST00000565354 SHANK2Q9UPX8 1470 aa26.62■■□□□ 1.85
CLN3-217ENST00000565354 PPARGC1BQ86YN6 1023 aaKnown RBP26.62■■□□□ 1.85
CLN3-217ENST00000565354 KDM5DQ9BY66 1539 aa26.61■■□□□ 1.85
CLN3-217ENST00000565354 TOM1O60784 492 aa26.61■■□□□ 1.85
CLN3-217ENST00000565354 PIP4K2BP78356 416 aa26.61■■□□□ 1.85
CLN3-217ENST00000565354 MED1Q15648 1581 aaPredicted RBP26.61■■□□□ 1.85
CLN3-217ENST00000565354 CAMSAP2Q08AD1 1489 aa26.61■■□□□ 1.85
CLN3-217ENST00000565354 MIA2Q96PC5 1412 aa26.6■■□□□ 1.85
CLN3-217ENST00000565354 KIF3BO15066 747 aa26.6■■□□□ 1.85
CLN3-217ENST00000565354 CCDC141Q6ZP82 1450 aa26.56■■□□□ 1.84
CLN3-217ENST00000565354 ANKLE2Q86XL3 938 aa26.56■■□□□ 1.84
CLN3-217ENST00000565354 VWDEQ8N2E2 1590 aa26.55■■□□□ 1.84
CLN3-217ENST00000565354 WASHC2CQ9Y4E1 1318 aa26.55■■□□□ 1.84
CLN3-217ENST00000565354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.55■■□□□ 1.84
CLN3-217ENST00000565354 THEMISQ8N1K5 641 aaPredicted RBP26.53■■□□□ 1.84
CLN3-217ENST00000565354 NLRP1Q9C000 1473 aa26.53■■□□□ 1.84
CLN3-217ENST00000565354 DEPDC5O75140 1603 aa26.53■■□□□ 1.84
CLN3-217ENST00000565354 FGD6Q6ZV73 1430 aa26.52■■□□□ 1.84
CLN3-217ENST00000565354 UGGT1Q9NYU2 1555 aa26.52■■□□□ 1.84
CLN3-217ENST00000565354 PTPN23Q9H3S7 1636 aa26.51■■□□□ 1.83
CLN3-217ENST00000565354 MED14O60244 1454 aa26.51■■□□□ 1.83
CLN3-217ENST00000565354 RSPH4AQ5TD94 716 aa26.5■■□□□ 1.83
CLN3-217ENST00000565354 NPHP4O75161 1426 aaPredicted RBP26.49■■□□□ 1.83
CLN3-217ENST00000565354 ALKQ9UM73 1620 aa26.48■■□□□ 1.83
CLN3-217ENST00000565354 IQGAP1P46940 1657 aa26.47■■□□□ 1.83
CLN3-217ENST00000565354 ARHGEF5Q12774 1597 aa26.46■■□□□ 1.83
CLN3-217ENST00000565354 TSPY4P0CV99 314 aa26.44■■□□□ 1.82
CLN3-217ENST00000565354 TSPY10P0CW01 314 aa26.44■■□□□ 1.82
CLN3-217ENST00000565354 FAM50AQ14320 339 aaKnown RBP26.43■■□□□ 1.82
CLN3-217ENST00000565354 STRCP1A6NGW2 1772 aa26.43■■□□□ 1.82
CLN3-217ENST00000565354 RNF17Q9BXT8 1623 aaKnown RBP26.42■■□□□ 1.82
CLN3-217ENST00000565354 ZC3H13Q5T200 1668 aaKnown RBP26.4■■□□□ 1.82
CLN3-217ENST00000565354 PHF23Q9BUL5 403 aaPredicted RBP26.39■■□□□ 1.82
CLN3-217ENST00000565354 ABCC3O15438 1527 aa26.38■■□□□ 1.81
CLN3-217ENST00000565354 LRRC7Q96NW7 1537 aa26.38■■□□□ 1.81
CLN3-217ENST00000565354 SYNMO15061 1565 aa26.37■■□□□ 1.81
CLN3-217ENST00000565354 ERVK-7P63135 1459 aa26.34■■□□□ 1.81
CLN3-217ENST00000565354 CFAP65Q6ZU64 1925 aaKnown RBP26.33■■□□□ 1.81
CLN3-217ENST00000565354 MAST1Q9Y2H9 1570 aa26.33■■□□□ 1.8
CLN3-217ENST00000565354 EIF2AK4Q9P2K8 1649 aaKnown RBP26.32■■□□□ 1.8
CLN3-217ENST00000565354 DAPK1P53355 1430 aa26.32■■□□□ 1.8
CLN3-217ENST00000565354 CROCC2H7BZ55 1655 aa26.31■■□□□ 1.8
CLN3-217ENST00000565354 UBR1Q8IWV7 1749 aa26.31■■□□□ 1.8
CLN3-217ENST00000565354 ABCC5O15440 1437 aa26.31■■□□□ 1.8
CLN3-217ENST00000565354 MROH1Q8NDA8 1641 aa26.29■■□□□ 1.8
CLN3-217ENST00000565354 CEP152O94986 1710 aa26.29■■□□□ 1.8
CLN3-217ENST00000565354 SENP3Q9H4L4 574 aaPredicted RBP26.28■■□□□ 1.8
CLN3-217ENST00000565354 SCAF11Q99590 1463 aaKnown RBP26.25■■□□□ 1.79
CLN3-217ENST00000565354 CHIC2Q9UKJ5 165 aa26.24■■□□□ 1.79
CLN3-217ENST00000565354 ITGAEP38570 1179 aa26.22■■□□□ 1.79
CLN3-217ENST00000565354 XIRP1Q702N8 1843 aaKnown RBP26.22■■□□□ 1.79
CLN3-217ENST00000565354 RRBP1Q9P2E9 1410 aaKnown RBP26.22■■□□□ 1.79
CLN3-217ENST00000565354 ARHGAP23Q9P227 1491 aa26.21■■□□□ 1.79
CLN3-217ENST00000565354 SLIT1O75093 1534 aa26.2■■□□□ 1.79
CLN3-217ENST00000565354 LTKP29376 864 aa26.19■■□□□ 1.78
CLN3-217ENST00000565354 ANKRD30AQ9BXX3 1397 aa26.19■■□□□ 1.78
CLN3-217ENST00000565354 DUOX2Q9NRD8 1548 aa26.19■■□□□ 1.78
CLN3-217ENST00000565354 TXNDC2Q86VQ3 553 aa26.17■■□□□ 1.78
CLN3-217ENST00000565354 RRP7BPQ9NSQ0 103 aa26.17■■□□□ 1.78
CLN3-217ENST00000565354 KIF15Q9NS87 1388 aa26.17■■□□□ 1.78
CLN3-217ENST00000565354 ARHGAP31Q2M1Z3 1444 aa26.15■■□□□ 1.78
CLN3-217ENST00000565354 PRDM15P57071 1507 aaPredicted RBP26.14■■□□□ 1.78
CLN3-217ENST00000565354 RGS17Q9UGC6 210 aaPredicted RBP26.14■■□□□ 1.78
CLN3-217ENST00000565354 EID1Q9Y6B2 187 aa26.12■■□□□ 1.77
CLN3-217ENST00000565354 ADGRL2O95490 1459 aa26.11■■□□□ 1.77
CLN3-217ENST00000565354 PIK3C2BO00750 1634 aa26.1■■□□□ 1.77
CLN3-217ENST00000565354 FAM135BQ49AJ0 1406 aa26.08■■□□□ 1.77
CLN3-217ENST00000565354 ERBINQ96RT1 1412 aa26.07■■□□□ 1.76
CLN3-217ENST00000565354 TMEM2Q9UHN6 1383 aa26.07■■□□□ 1.76
CLN3-217ENST00000565354 KDM5AP29375 1690 aaKnown RBP26.06■■□□□ 1.76
CLN3-217ENST00000565354 ROCK1Q13464 1354 aa26.04■■□□□ 1.76
CLN3-217ENST00000565354 STAG3Q9UJ98 1225 aa26.02■■□□□ 1.76
CLN3-217ENST00000565354 TMEM94Q12767 1356 aa26.02■■□□□ 1.76
CLN3-217ENST00000565354 EFCAB6Q5THR3 1501 aa26.01■■□□□ 1.75
CLN3-217ENST00000565354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.01■■□□□ 1.75
CLN3-217ENST00000565354 ROBO1Q9Y6N7 1651 aa26■■□□□ 1.75
CLN3-217ENST00000565354 KANK1Q14678 1352 aa25.99■■□□□ 1.75
CLN3-217ENST00000565354 KCNA6P17658 529 aa25.99■■□□□ 1.75
CLN3-217ENST00000565354 ANKRD50Q9ULJ7 1429 aa25.98■■□□□ 1.75
CLN3-217ENST00000565354 TET3O43151 1660 aa25.98■■□□□ 1.75
CLN3-217ENST00000565354 POTEAQ6S8J7 498 aa25.97■■□□□ 1.75
CLN3-217ENST00000565354 IDI1Q13907 227 aa25.96■■□□□ 1.75
CLN3-217ENST00000565354 LMTK2Q8IWU2 1503 aa25.95■■□□□ 1.74
CLN3-217ENST00000565354 PROSER2Q86WR7 435 aaPredicted RBP25.95■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms