RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NISCHQ9Y2I1 1504 aa41.98■■■■■ 4.31
CLN3-217ENST00000565354 ABCC9O60706 1549 aa38.31■■■■□ 3.72
CLN3-217ENST00000565354 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
CLN3-217ENST00000565354 DNAJC5BQ9UF47 199 aa36.34■■■■□ 3.41
CLN3-217ENST00000565354 RB1CC1Q8TDY2 1594 aa36.28■■■■□ 3.4
CLN3-217ENST00000565354 NACADO15069 1562 aa35.93■■■■□ 3.34
CLN3-217ENST00000565354 DCAF8L2P0C7V8 631 aa35.58■■■■□ 3.29
CLN3-217ENST00000565354 PABPN1Q86U42 306 aaKnown RBP eCLIP35.57■■■■□ 3.28
CLN3-217ENST00000565354 UNC13AQ9UPW8 1703 aa35.52■■■■□ 3.28
CLN3-217ENST00000565354 MYO15BQ96JP2 1530 aa35.28■■■■□ 3.24
CLN3-217ENST00000565354 BICRAQ9NZM4 1560 aa35.25■■■■□ 3.23
CLN3-217ENST00000565354 SHROOM4Q9ULL8 1493 aa34.73■■■■□ 3.15
CLN3-217ENST00000565354 ZCCHC6Q5VYS8 1495 aaKnown RBP34.69■■■■□ 3.14
CLN3-217ENST00000565354 DCAF1Q9Y4B6 1507 aa34.66■■■■□ 3.14
CLN3-217ENST00000565354 CC2D2AQ9P2K1 1620 aa34.61■■■■□ 3.13
CLN3-217ENST00000565354 CECR2Q9BXF3 1484 aa34.57■■■■□ 3.12
CLN3-217ENST00000565354 SCRIBQ14160 1630 aa34.48■■■■□ 3.11
CLN3-217ENST00000565354 EIF4G1Q04637 1599 aaKnown RBP34.41■■■■□ 3.1
CLN3-217ENST00000565354 DNAJC5Q9H3Z4 198 aa33.73■■■□□ 2.99
CLN3-217ENST00000565354 CUX2O14529 1486 aa33.23■■■□□ 2.91
CLN3-217ENST00000565354 NCAPD3P42695 1498 aa33.17■■■□□ 2.9
CLN3-217ENST00000565354 ERCC6Q03468 1493 aa33.12■■■□□ 2.89
CLN3-217ENST00000565354 ATAD2BQ9ULI0 1458 aa32.99■■■□□ 2.87
CLN3-217ENST00000565354 SMARCA2P51531 1590 aa32.89■■■□□ 2.86
CLN3-217ENST00000565354 HMGXB3Q12766 1538 aa32.89■■■□□ 2.86
CLN3-217ENST00000565354 SMARCA4P51532 1647 aa32.86■■■□□ 2.85
CLN3-217ENST00000565354 NESP48681 1621 aa32.78■■■□□ 2.84
CLN3-217ENST00000565354 BAZ1BQ9UIG0 1483 aaKnown RBP32.65■■■□□ 2.82
CLN3-217ENST00000565354 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
CLN3-217ENST00000565354 THOC2Q8NI27 1593 aaKnown RBP32.58■■■□□ 2.81
CLN3-217ENST00000565354 PEG3Q9GZU2 1588 aa32.55■■■□□ 2.8
CLN3-217ENST00000565354 LAMC3Q9Y6N6 1575 aa32.5■■■□□ 2.79
CLN3-217ENST00000565354 KIF21AQ7Z4S6 1674 aa32.39■■■□□ 2.78
CLN3-217ENST00000565354 MROH2BQ7Z745 1585 aa32.32■■■□□ 2.77
CLN3-217ENST00000565354 PDS5BQ9NTI5 1447 aa32.32■■■□□ 2.76
CLN3-217ENST00000565354 CADPSQ9ULU8 1353 aa32.12■■■□□ 2.73
CLN3-217ENST00000565354 MRC2Q9UBG0 1479 aa32.07■■■□□ 2.72
CLN3-217ENST00000565354 TRIM41Q8WV44 630 aa32.03■■■□□ 2.72
CLN3-217ENST00000565354 WDR62O43379 1518 aa32.01■■■□□ 2.72
CLN3-217ENST00000565354 WIZO95785 1651 aa31.94■■■□□ 2.7
CLN3-217ENST00000565354 CEP164Q9UPV0 1460 aa31.84■■■□□ 2.69
CLN3-217ENST00000565354 FANCD2Q9BXW9 1451 aa31.76■■■□□ 2.67
CLN3-217ENST00000565354 CFTRP13569 1480 aa31.66■■■□□ 2.66
CLN3-217ENST00000565354 OSCARQ8IYS5 282 aa31.61■■■□□ 2.65
CLN3-217ENST00000565354 URB2Q14146 1524 aaKnown RBP31.54■■■□□ 2.64
CLN3-217ENST00000565354 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
CLN3-217ENST00000565354 RSF1Q96T23 1441 aaPredicted RBP31.49■■■□□ 2.63
CLN3-217ENST00000565354 PRDM2Q13029 1718 aa31.38■■■□□ 2.61
CLN3-217ENST00000565354 RIMBP3CA6NJZ7 1639 aa31.28■■■□□ 2.6
CLN3-217ENST00000565354 RIMBP3BA6NNM3 1639 aa31.28■■■□□ 2.6
CLN3-217ENST00000565354 RIMBP3Q9UFD9 1639 aa31.28■■■□□ 2.6
CLN3-217ENST00000565354 IFT140Q96RY7 1462 aa31.21■■■□□ 2.59
CLN3-217ENST00000565354 ZNF608Q9ULD9 1512 aaPredicted RBP31.21■■■□□ 2.59
CLN3-217ENST00000565354 CCDC88BA6NC98 1476 aa31.14■■■□□ 2.57
CLN3-217ENST00000565354 ARHGEF11O15085 1522 aa31.13■■■□□ 2.57
CLN3-217ENST00000565354 TOPBP1Q92547 1522 aa31.12■■■□□ 2.57
CLN3-217ENST00000565354 EIF4G3O43432 1585 aaKnown RBP31.04■■■□□ 2.56
CLN3-217ENST00000565354 ABCC8Q09428 1581 aa31.02■■■□□ 2.56
CLN3-217ENST00000565354 DNMBPQ6XZF7 1577 aa30.97■■■□□ 2.55
CLN3-217ENST00000565354 SUPT5HO00267 1087 aaKnown RBP30.95■■■□□ 2.55
CLN3-217ENST00000565354 CHD1O14646 1710 aa30.92■■■□□ 2.54
CLN3-217ENST00000565354 CYB5RLQ6IPT4 315 aa30.9■■■□□ 2.54
CLN3-217ENST00000565354 TARBP1Q13395 1621 aaKnown RBP30.89■■■□□ 2.54
CLN3-217ENST00000565354 AQRO60306 1485 aaKnown RBP eCLIP30.87■■■□□ 2.53
CLN3-217ENST00000565354 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
CLN3-217ENST00000565354 POLA1P09884 1462 aaPredicted RBP30.76■■■□□ 2.52
CLN3-217ENST00000565354 FBLN2P98095 1184 aa30.74■■■□□ 2.51
CLN3-217ENST00000565354 TRHP20396 242 aaPredicted RBP30.7■■■□□ 2.51
CLN3-217ENST00000565354 RAD54L2Q9Y4B4 1467 aa30.65■■■□□ 2.5
CLN3-217ENST00000565354 SOGA1O94964 1423 aa30.61■■■□□ 2.49
CLN3-217ENST00000565354 TDRD9Q8NDG6 1382 aaKnown RBP30.6■■■□□ 2.49
CLN3-217ENST00000565354 WDR97A6NE52 1622 aa30.55■■■□□ 2.48
CLN3-217ENST00000565354 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
CLN3-217ENST00000565354 CLASP1Q7Z460 1538 aa30.53■■■□□ 2.48
CLN3-217ENST00000565354 FGD5Q6ZNL6 1462 aa30.5■■■□□ 2.47
CLN3-217ENST00000565354 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
CLN3-217ENST00000565354 MAGI1Q96QZ7 1491 aaPredicted RBP30.46■■■□□ 2.47
CLN3-217ENST00000565354 CHMP7Q8WUX9 453 aaPredicted RBP30.45■■■□□ 2.47
CLN3-217ENST00000565354 CUX1P39880 1505 aa30.41■■■□□ 2.46
CLN3-217ENST00000565354 GRIN2BQ13224 1484 aa30.4■■■□□ 2.46
CLN3-217ENST00000565354 SYNJ2O15056 1496 aa30.37■■■□□ 2.45
CLN3-217ENST00000565354 PBRM1Q86U86 1689 aa30.29■■■□□ 2.44
CLN3-217ENST00000565354 GAPVD1Q14C86 1478 aa30.24■■■□□ 2.43
CLN3-217ENST00000565354 ABCA5Q8WWZ7 1642 aa30.15■■■□□ 2.42
CLN3-217ENST00000565354 AEBP2Q6ZN18 517 aaPredicted RBP30.15■■■□□ 2.42
CLN3-217ENST00000565354 ABCA10Q8WWZ4 1543 aa30.14■■■□□ 2.42
CLN3-217ENST00000565354 ERCC6L2Q5T890 1561 aa30.02■■■□□ 2.4
CLN3-217ENST00000565354 GRIN2AQ12879 1464 aa30.01■■■□□ 2.4
CLN3-217ENST00000565354 ADAMTS12P58397 1594 aa29.95■■■□□ 2.39
CLN3-217ENST00000565354 NUP160Q12769 1436 aa29.94■■■□□ 2.38
CLN3-217ENST00000565354 CEP170Q5SW79 1584 aa29.94■■■□□ 2.38
CLN3-217ENST00000565354 WRNQ14191 1432 aaPredicted RBP eCLIP29.92■■■□□ 2.38
CLN3-217ENST00000565354 SHROOM2Q13796 1616 aa29.88■■■□□ 2.37
CLN3-217ENST00000565354 FHAD1B1AJZ9 1412 aa29.83■■■□□ 2.37
CLN3-217ENST00000565354 BIVM-ERCC5R4GMW8 1640 aa29.82■■■□□ 2.36
CLN3-217ENST00000565354 TOP2BQ02880 1626 aa29.81■■■□□ 2.36
CLN3-217ENST00000565354 ERICH3Q5RHP9 1530 aa29.76■■■□□ 2.36
CLN3-217ENST00000565354 KIF13AQ9H1H9 1805 aa29.75■■■□□ 2.35
CLN3-217ENST00000565354 PRG4Q92954 1404 aaPredicted RBP29.67■■■□□ 2.34
CLN3-217ENST00000565354 JPH4Q96JJ6 628 aa29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms