RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NCKAP5LQ9HCH0 1330 aa25.49■■□□□ 1.67
SNX1-213ENST00000561026 FAM135AQ9P2D6 1515 aa25.49■■□□□ 1.67
SNX1-213ENST00000561026 CEP170BQ9Y4F5 1589 aaPredicted RBP25.48■■□□□ 1.67
SNX1-213ENST00000561026 KDM5DQ9BY66 1539 aa25.48■■□□□ 1.67
SNX1-213ENST00000561026 FBXO31Q5XUX0 539 aaPredicted RBP25.48■■□□□ 1.67
SNX1-213ENST00000561026 ZNF142P52746 1687 aaPredicted RBP25.48■■□□□ 1.67
SNX1-213ENST00000561026 MAST1Q9Y2H9 1570 aa25.47■■□□□ 1.67
SNX1-213ENST00000561026 PLA2R1Q13018 1463 aa25.47■■□□□ 1.67
SNX1-213ENST00000561026 PKD2Q13563 968 aa25.46■■□□□ 1.67
SNX1-213ENST00000561026 PZPP20742 1482 aa25.45■■□□□ 1.66
SNX1-213ENST00000561026 TNRQ92752 1358 aa25.43■■□□□ 1.66
SNX1-213ENST00000561026 A2ML1A8K2U0 1454 aa25.43■■□□□ 1.66
SNX1-213ENST00000561026 TCOF1Q13428 1488 aaKnown RBP25.42■■□□□ 1.66
SNX1-213ENST00000561026 LTBP4Q8N2S1 1624 aa25.41■■□□□ 1.66
SNX1-213ENST00000561026 DNMT1P26358 1616 aaKnown RBP25.38■■□□□ 1.65
SNX1-213ENST00000561026 RNF17Q9BXT8 1623 aaKnown RBP25.37■■□□□ 1.65
SNX1-213ENST00000561026 ABCC5O15440 1437 aa25.36■■□□□ 1.65
SNX1-213ENST00000561026 ZNF335Q9H4Z2 1342 aaPredicted RBP25.35■■□□□ 1.65
SNX1-213ENST00000561026 EIF2AK4Q9P2K8 1649 aaKnown RBP25.35■■□□□ 1.65
SNX1-213ENST00000561026 DUOX2Q9NRD8 1548 aa25.34■■□□□ 1.65
SNX1-213ENST00000561026 PTPN23Q9H3S7 1636 aa25.34■■□□□ 1.65
SNX1-213ENST00000561026 ABCC3O15438 1527 aa25.34■■□□□ 1.65
SNX1-213ENST00000561026 FGD6Q6ZV73 1430 aa25.33■■□□□ 1.65
SNX1-213ENST00000561026 SHANK2Q9UPX8 1470 aa25.32■■□□□ 1.64
SNX1-213ENST00000561026 RRP7BPQ9NSQ0 103 aa25.31■■□□□ 1.64
SNX1-213ENST00000561026 KIF15Q9NS87 1388 aa25.31■■□□□ 1.64
SNX1-213ENST00000561026 IQSEC2Q5JU85 1478 aa25.31■■□□□ 1.64
SNX1-213ENST00000561026 NLRP1Q9C000 1473 aa25.31■■□□□ 1.64
SNX1-213ENST00000561026 THEMISQ8N1K5 641 aaPredicted RBP25.31■■□□□ 1.64
SNX1-213ENST00000561026 MROH1Q8NDA8 1641 aa25.3■■□□□ 1.64
SNX1-213ENST00000561026 ZC3H13Q5T200 1668 aaKnown RBP25.29■■□□□ 1.64
SNX1-213ENST00000561026 DAPK1P53355 1430 aa25.29■■□□□ 1.64
SNX1-213ENST00000561026 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.27■■□□□ 1.64
SNX1-213ENST00000561026 ANKLE2Q86XL3 938 aa25.27■■□□□ 1.64
SNX1-213ENST00000561026 ERBINQ96RT1 1412 aa25.26■■□□□ 1.63
SNX1-213ENST00000561026 CROCC2H7BZ55 1655 aa25.26■■□□□ 1.63
SNX1-213ENST00000561026 UGGT1Q9NYU2 1555 aa25.25■■□□□ 1.63
SNX1-213ENST00000561026 SPATA31D1Q6ZQQ2 1576 aa25.24■■□□□ 1.63
SNX1-213ENST00000561026 ERVK-7P63135 1459 aa25.23■■□□□ 1.63
SNX1-213ENST00000561026 NEURL4Q96JN8 1562 aa25.22■■□□□ 1.63
SNX1-213ENST00000561026 CHIC2Q9UKJ5 165 aa25.22■■□□□ 1.63
SNX1-213ENST00000561026 ANKRD30AQ9BXX3 1397 aa25.22■■□□□ 1.63
SNX1-213ENST00000561026 POLR1AO95602 1720 aaPredicted RBP25.2■■□□□ 1.62
SNX1-213ENST00000561026 PRDM15P57071 1507 aaPredicted RBP25.2■■□□□ 1.62
SNX1-213ENST00000561026 CEP152O94986 1710 aa25.19■■□□□ 1.62
SNX1-213ENST00000561026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.19■■□□□ 1.626e-7■■□□□ 13.5
SNX1-213ENST00000561026 ARHGAP31Q2M1Z3 1444 aa25.18■■□□□ 1.62
SNX1-213ENST00000561026 MED14O60244 1454 aa25.16■■□□□ 1.62
SNX1-213ENST00000561026 UBAP1LF5GYI3 381 aa25.15■■□□□ 1.62
SNX1-213ENST00000561026 FAM50AQ14320 339 aaKnown RBP25.15■■□□□ 1.62
SNX1-213ENST00000561026 NPHP4O75161 1426 aaPredicted RBP25.15■■□□□ 1.62
SNX1-213ENST00000561026 DEPDC5O75140 1603 aa25.14■■□□□ 1.62
SNX1-213ENST00000561026 KANK1Q14678 1352 aa25.14■■□□□ 1.62
SNX1-213ENST00000561026 CFAP65Q6ZU64 1925 aaKnown RBP25.13■■□□□ 1.61
SNX1-213ENST00000561026 ADGRL2O95490 1459 aa25.1■■□□□ 1.61
SNX1-213ENST00000561026 CPS1P31327 1500 aa25.1■■□□□ 1.61
SNX1-213ENST00000561026 VWDEQ8N2E2 1590 aa25.07■■□□□ 1.6
SNX1-213ENST00000561026 LMTK2Q8IWU2 1503 aa25.06■■□□□ 1.6
SNX1-213ENST00000561026 UBR1Q8IWV7 1749 aa25.06■■□□□ 1.6
SNX1-213ENST00000561026 IQGAP1P46940 1657 aa25.06■■□□□ 1.6
SNX1-213ENST00000561026 LTKP29376 864 aa25.03■■□□□ 1.6
SNX1-213ENST00000561026 TXNDC2Q86VQ3 553 aa25.03■■□□□ 1.6
SNX1-213ENST00000561026 SCAF11Q99590 1463 aaKnown RBP25.02■■□□□ 1.6
SNX1-213ENST00000561026 ARHGAP23Q9P227 1491 aa25.02■■□□□ 1.6
SNX1-213ENST00000561026 ANKRD50Q9ULJ7 1429 aa25.02■■□□□ 1.6
SNX1-213ENST00000561026 DISP3Q9P2K9 1392 aa25.01■■□□□ 1.59
SNX1-213ENST00000561026 SLIT1O75093 1534 aa25.01■■□□□ 1.59
SNX1-213ENST00000561026 IDI1Q13907 227 aa25.01■■□□□ 1.59
SNX1-213ENST00000561026 TOM1O60784 492 aa25■■□□□ 1.59
SNX1-213ENST00000561026 STAG3Q9UJ98 1225 aa24.99■■□□□ 1.59
SNX1-213ENST00000561026 EID1Q9Y6B2 187 aa24.99■■□□□ 1.59
SNX1-213ENST00000561026 TMEM2Q9UHN6 1383 aa24.98■■□□□ 1.59
SNX1-213ENST00000561026 PIK3C2BO00750 1634 aa24.97■■□□□ 1.59
SNX1-213ENST00000561026 NOS1P29475 1434 aa24.96■■□□□ 1.59
SNX1-213ENST00000561026 EFCAB6Q5THR3 1501 aa24.96■■□□□ 1.59
SNX1-213ENST00000561026 PIP4K2BP78356 416 aa24.95■■□□□ 1.59
SNX1-213ENST00000561026 SLC52A1Q9NWF4 448 aa24.93■■□□□ 1.58
SNX1-213ENST00000561026 SCAF1Q9H7N4 1312 aaKnown RBP24.93■■□□□ 1.58
SNX1-213ENST00000561026 SYNMO15061 1565 aa24.93■■□□□ 1.58
SNX1-213ENST00000561026 ROCK1Q13464 1354 aa24.92■■□□□ 1.58
SNX1-213ENST00000561026 LRRC7Q96NW7 1537 aa24.92■■□□□ 1.58
SNX1-213ENST00000561026 RPRD2Q5VT52 1461 aaKnown RBP24.91■■□□□ 1.58
SNX1-213ENST00000561026 STRCP1A6NGW2 1772 aa24.91■■□□□ 1.58
SNX1-213ENST00000561026 KDM5AP29375 1690 aaKnown RBP24.91■■□□□ 1.58
SNX1-213ENST00000561026 PPARGC1BQ86YN6 1023 aaKnown RBP24.9■■□□□ 1.58
SNX1-213ENST00000561026 HSPA1LP34931 641 aa24.88■■□□□ 1.57
SNX1-213ENST00000561026 ILDR2Q71H61 639 aa24.87■■□□□ 1.57
SNX1-213ENST00000561026 ALKQ9UM73 1620 aa24.85■■□□□ 1.57
SNX1-213ENST00000561026 TET3O43151 1660 aa24.85■■□□□ 1.57
SNX1-213ENST00000561026 ITGAEP38570 1179 aa24.84■■□□□ 1.57
SNX1-213ENST00000561026 ADGRB3O60242 1522 aa24.84■■□□□ 1.57
SNX1-213ENST00000561026 UNC13BO14795 1591 aa24.83■■□□□ 1.57
SNX1-213ENST00000561026 SLC26A8Q96RN1 970 aa24.8■■□□□ 1.56
SNX1-213ENST00000561026 KCNA6P17658 529 aa24.78■■□□□ 1.56
SNX1-213ENST00000561026 GCC2Q8IWJ2 1684 aa24.77■■□□□ 1.56
SNX1-213ENST00000561026 NUP155O75694 1391 aa24.77■■□□□ 1.56
SNX1-213ENST00000561026 ZFYVE9O95405 1425 aa24.75■■□□□ 1.55
SNX1-213ENST00000561026 HDGFP51858 240 aaKnown RBP24.75■■□□□ 1.55
SNX1-213ENST00000561026 BCANQ96GW7 911 aa24.75■■□□□ 1.55
SNX1-213ENST00000561026 IQGAP3Q86VI3 1631 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms