RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NISCHQ9Y2I1 1504 aa40.38■■■■■ 4.05
SNX1-213ENST00000561026 CCDC180Q9P1Z9 1646 aa36.09■■■■□ 3.37
SNX1-213ENST00000561026 ABCC9O60706 1549 aa36■■■■□ 3.35
SNX1-213ENST00000561026 RB1CC1Q8TDY2 1594 aa34.32■■■■□ 3.08
SNX1-213ENST00000561026 NACADO15069 1562 aa34.14■■■■□ 3.06
SNX1-213ENST00000561026 DCAF8L2P0C7V8 631 aa34.06■■■■□ 3.04
SNX1-213ENST00000561026 MYO15BQ96JP2 1530 aa33.74■■■□□ 2.99
SNX1-213ENST00000561026 DNAJC5BQ9UF47 199 aa33.68■■■□□ 2.98
SNX1-213ENST00000561026 PABPN1Q86U42 306 aaKnown RBP eCLIP33.59■■■□□ 2.97
SNX1-213ENST00000561026 ZCCHC6Q5VYS8 1495 aaKnown RBP33.48■■■□□ 2.95
SNX1-213ENST00000561026 UNC13AQ9UPW8 1703 aa33.47■■■□□ 2.95
SNX1-213ENST00000561026 DCAF1Q9Y4B6 1507 aa33.36■■■□□ 2.93
SNX1-213ENST00000561026 BICRAQ9NZM4 1560 aa33.31■■■□□ 2.92
SNX1-213ENST00000561026 SCRIBQ14160 1630 aa32.91■■■□□ 2.86
SNX1-213ENST00000561026 SHROOM4Q9ULL8 1493 aa32.9■■■□□ 2.86
SNX1-213ENST00000561026 CC2D2AQ9P2K1 1620 aa32.5■■■□□ 2.79
SNX1-213ENST00000561026 EIF4G1Q04637 1599 aaKnown RBP32.48■■■□□ 2.79
SNX1-213ENST00000561026 CECR2Q9BXF3 1484 aa32.41■■■□□ 2.78
SNX1-213ENST00000561026 NCAPD3P42695 1498 aa31.55■■■□□ 2.64
SNX1-213ENST00000561026 ATAD2BQ9ULI0 1458 aa31.46■■■□□ 2.63
SNX1-213ENST00000561026 SMARCA4P51532 1647 aa31.42■■■□□ 2.62
SNX1-213ENST00000561026 SMARCA2P51531 1590 aa31.35■■■□□ 2.61
SNX1-213ENST00000561026 BAZ1AQ9NRL2 1556 aaPredicted RBP31.32■■■□□ 2.6
SNX1-213ENST00000561026 HMGXB3Q12766 1538 aa31.28■■■□□ 2.6
SNX1-213ENST00000561026 BAZ1BQ9UIG0 1483 aaKnown RBP31.15■■■□□ 2.58
SNX1-213ENST00000561026 PEG3Q9GZU2 1588 aa31.14■■■□□ 2.58
SNX1-213ENST00000561026 MROH2BQ7Z745 1585 aa31.11■■■□□ 2.57
SNX1-213ENST00000561026 ERCC6Q03468 1493 aa31.07■■■□□ 2.56
SNX1-213ENST00000561026 NESP48681 1621 aa30.96■■■□□ 2.55
SNX1-213ENST00000561026 CUX2O14529 1486 aa30.96■■■□□ 2.55
SNX1-213ENST00000561026 DNAJC5Q9H3Z4 198 aa30.82■■■□□ 2.52
SNX1-213ENST00000561026 LAMC3Q9Y6N6 1575 aa30.76■■■□□ 2.51
SNX1-213ENST00000561026 WIZO95785 1651 aa30.71■■■□□ 2.51
SNX1-213ENST00000561026 PDS5BQ9NTI5 1447 aa30.62■■■□□ 2.49
SNX1-213ENST00000561026 CADPSQ9ULU8 1353 aa30.61■■■□□ 2.49
SNX1-213ENST00000561026 THOC2Q8NI27 1593 aaKnown RBP30.57■■■□□ 2.48
SNX1-213ENST00000561026 RSF1Q96T23 1441 aaPredicted RBP30.55■■■□□ 2.48
SNX1-213ENST00000561026 KIF21AQ7Z4S6 1674 aa30.51■■■□□ 2.47
SNX1-213ENST00000561026 TOP2AP11388 1531 aaKnown RBP30.34■■■□□ 2.45
SNX1-213ENST00000561026 MRC2Q9UBG0 1479 aa30.31■■■□□ 2.44
SNX1-213ENST00000561026 CFTRP13569 1480 aa30.27■■■□□ 2.44
SNX1-213ENST00000561026 CEP164Q9UPV0 1460 aa30.23■■■□□ 2.43
SNX1-213ENST00000561026 WDR62O43379 1518 aa30.23■■■□□ 2.43
SNX1-213ENST00000561026 FANCD2Q9BXW9 1451 aa30.23■■■□□ 2.43
SNX1-213ENST00000561026 CCDC88BA6NC98 1476 aa30.04■■■□□ 2.4
SNX1-213ENST00000561026 URB2Q14146 1524 aaKnown RBP29.96■■■□□ 2.39
SNX1-213ENST00000561026 PRDM2Q13029 1718 aa29.87■■■□□ 2.37
SNX1-213ENST00000561026 TOPBP1Q92547 1522 aa29.67■■■□□ 2.34
SNX1-213ENST00000561026 IFT140Q96RY7 1462 aa29.64■■■□□ 2.34
SNX1-213ENST00000561026 ABCC8Q09428 1581 aa29.64■■■□□ 2.33
SNX1-213ENST00000561026 OSCARQ8IYS5 282 aa29.64■■■□□ 2.33
SNX1-213ENST00000561026 ZNF608Q9ULD9 1512 aaPredicted RBP29.58■■■□□ 2.33
SNX1-213ENST00000561026 DNMBPQ6XZF7 1577 aa29.55■■■□□ 2.32
SNX1-213ENST00000561026 TRIM41Q8WV44 630 aa29.5■■■□□ 2.31
SNX1-213ENST00000561026 POLA1P09884 1462 aaPredicted RBP29.38■■■□□ 2.29
SNX1-213ENST00000561026 TARBP1Q13395 1621 aaKnown RBP29.37■■■□□ 2.29
SNX1-213ENST00000561026 EIF4G3O43432 1585 aaKnown RBP29.37■■■□□ 2.29
SNX1-213ENST00000561026 AQRO60306 1485 aaKnown RBP eCLIP29.34■■■□□ 2.297e-7■■■■■ 31.9
SNX1-213ENST00000561026 SUPT5HO00267 1087 aaKnown RBP29.34■■■□□ 2.29
SNX1-213ENST00000561026 SOGA1O94964 1423 aa29.28■■■□□ 2.28
SNX1-213ENST00000561026 RAD54L2Q9Y4B4 1467 aa29.27■■■□□ 2.28
SNX1-213ENST00000561026 CUX1P39880 1505 aa29.21■■■□□ 2.27
SNX1-213ENST00000561026 FGD5Q6ZNL6 1462 aa29.21■■■□□ 2.27
SNX1-213ENST00000561026 TDRD9Q8NDG6 1382 aaKnown RBP29.2■■■□□ 2.26
SNX1-213ENST00000561026 RIMBP3CA6NJZ7 1639 aa29.14■■■□□ 2.26
SNX1-213ENST00000561026 RIMBP3BA6NNM3 1639 aa29.14■■■□□ 2.26
SNX1-213ENST00000561026 RIMBP3Q9UFD9 1639 aa29.14■■■□□ 2.26
SNX1-213ENST00000561026 FBLN2P98095 1184 aa29.13■■■□□ 2.25
SNX1-213ENST00000561026 CHD1O14646 1710 aa29.09■■■□□ 2.25
SNX1-213ENST00000561026 ARHGEF11O15085 1522 aa29.09■■■□□ 2.25
SNX1-213ENST00000561026 WDR97A6NE52 1622 aa29.07■■■□□ 2.24
SNX1-213ENST00000561026 SNAPC4Q5SXM2 1469 aa29.02■■■□□ 2.24
SNX1-213ENST00000561026 GRIN2BQ13224 1484 aa28.98■■■□□ 2.23
SNX1-213ENST00000561026 MAGI1Q96QZ7 1491 aaPredicted RBP28.96■■■□□ 2.23
SNX1-213ENST00000561026 CHMP7Q8WUX9 453 aaPredicted RBP28.96■■■□□ 2.23
SNX1-213ENST00000561026 CYB5RLQ6IPT4 315 aa28.93■■■□□ 2.22
SNX1-213ENST00000561026 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
SNX1-213ENST00000561026 ABCA10Q8WWZ4 1543 aa28.9■■■□□ 2.22
SNX1-213ENST00000561026 SYNJ2O15056 1496 aa28.86■■■□□ 2.21
SNX1-213ENST00000561026 WRNQ14191 1432 aaPredicted RBP eCLIP28.84■■■□□ 2.21
SNX1-213ENST00000561026 CLASP1Q7Z460 1538 aa28.82■■■□□ 2.2
SNX1-213ENST00000561026 ARAP1Q96P48 1450 aa28.82■■■□□ 2.2
SNX1-213ENST00000561026 SYNJ1O43426 1573 aa28.81■■■□□ 2.2
SNX1-213ENST00000561026 ABCA5Q8WWZ7 1642 aa28.8■■■□□ 2.2
SNX1-213ENST00000561026 PBRM1Q86U86 1689 aa28.79■■■□□ 2.2
SNX1-213ENST00000561026 TOP2BQ02880 1626 aa28.77■■■□□ 2.2
SNX1-213ENST00000561026 BIVM-ERCC5R4GMW8 1640 aa28.75■■■□□ 2.19
SNX1-213ENST00000561026 GRIN2AQ12879 1464 aa28.6■■■□□ 2.17
SNX1-213ENST00000561026 ADAMTS12P58397 1594 aa28.57■■■□□ 2.16
SNX1-213ENST00000561026 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
SNX1-213ENST00000561026 ERICH3Q5RHP9 1530 aa28.54■■■□□ 2.16
SNX1-213ENST00000561026 TRHP20396 242 aaPredicted RBP28.53■■■□□ 2.16
SNX1-213ENST00000561026 NUP160Q12769 1436 aa28.52■■■□□ 2.16
SNX1-213ENST00000561026 CEP170Q5SW79 1584 aa28.46■■■□□ 2.15
SNX1-213ENST00000561026 ERCC6L2Q5T890 1561 aa28.38■■■□□ 2.13
SNX1-213ENST00000561026 SHROOM2Q13796 1616 aa28.32■■■□□ 2.12
SNX1-213ENST00000561026 JPH4Q96JJ6 628 aa28.27■■■□□ 2.12
SNX1-213ENST00000561026 IGF1RP08069 1367 aa28.26■■■□□ 2.11
SNX1-213ENST00000561026 KIF27Q86VH2 1401 aa28.26■■■□□ 2.11
SNX1-213ENST00000561026 PRG4Q92954 1404 aaPredicted RBP28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms