RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KIF3BO15066 747 aa18.37■□□□□ 0.53
LDLR-212ENST00000560467 TNRQ92752 1358 aa18.37■□□□□ 0.53
LDLR-212ENST00000560467 CCDC141Q6ZP82 1450 aa18.36■□□□□ 0.53
LDLR-212ENST00000560467 CAMSAP2Q08AD1 1489 aa18.35■□□□□ 0.53
LDLR-212ENST00000560467 NCOA2Q15596 1464 aa18.35■□□□□ 0.53
LDLR-212ENST00000560467 DNMT1P26358 1616 aaKnown RBP18.34■□□□□ 0.53
LDLR-212ENST00000560467 PZPP20742 1482 aa18.33■□□□□ 0.53
LDLR-212ENST00000560467 KDM5DQ9BY66 1539 aa18.33■□□□□ 0.52
LDLR-212ENST00000560467 APLP2Q06481 763 aa18.31■□□□□ 0.52
LDLR-212ENST00000560467 NEURL4Q96JN8 1562 aa18.3■□□□□ 0.52
LDLR-212ENST00000560467 WASHC2CQ9Y4E1 1318 aa18.3■□□□□ 0.52
LDLR-212ENST00000560467 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.28■□□□□ 0.52
LDLR-212ENST00000560467 FAM135AQ9P2D6 1515 aa18.28■□□□□ 0.52
LDLR-212ENST00000560467 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.52
LDLR-212ENST00000560467 MIA2Q96PC5 1412 aa18.27■□□□□ 0.52
LDLR-212ENST00000560467 RSPH4AQ5TD94 716 aa18.27■□□□□ 0.52
LDLR-212ENST00000560467 SHANK2Q9UPX8 1470 aa18.26■□□□□ 0.51
LDLR-212ENST00000560467 HSPA1LP34931 641 aa18.25■□□□□ 0.51
LDLR-212ENST00000560467 PIP4K2BP78356 416 aa18.25■□□□□ 0.51
LDLR-212ENST00000560467 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
LDLR-212ENST00000560467 CPS1P31327 1500 aa18.24■□□□□ 0.51
LDLR-212ENST00000560467 NLRP1Q9C000 1473 aa18.24■□□□□ 0.51
LDLR-212ENST00000560467 ARHGEF5Q12774 1597 aa18.24■□□□□ 0.51
LDLR-212ENST00000560467 TSPY4P0CV99 314 aa18.23■□□□□ 0.51
LDLR-212ENST00000560467 TSPY10P0CW01 314 aa18.23■□□□□ 0.51
LDLR-212ENST00000560467 THEMISQ8N1K5 641 aaPredicted RBP18.22■□□□□ 0.51
LDLR-212ENST00000560467 POLR1AO95602 1720 aaPredicted RBP18.22■□□□□ 0.51
LDLR-212ENST00000560467 NPHP4O75161 1426 aaPredicted RBP18.22■□□□□ 0.51
LDLR-212ENST00000560467 VWDEQ8N2E2 1590 aa18.21■□□□□ 0.51
LDLR-212ENST00000560467 UGGT1Q9NYU2 1555 aa18.21■□□□□ 0.51
LDLR-212ENST00000560467 ABCC3O15438 1527 aa18.2■□□□□ 0.5
LDLR-212ENST00000560467 TOM1O60784 492 aa18.2■□□□□ 0.5
LDLR-212ENST00000560467 VPS8Q8N3P4 1428 aa18.2■□□□□ 0.5
LDLR-212ENST00000560467 LRRC9Q6ZRR7 1453 aa18.2■□□□□ 0.5
LDLR-212ENST00000560467 MED14O60244 1454 aa18.18■□□□□ 0.5
LDLR-212ENST00000560467 RNF17Q9BXT8 1623 aaKnown RBP18.17■□□□□ 0.5
LDLR-212ENST00000560467 ERVK-7P63135 1459 aa18.16■□□□□ 0.5
LDLR-212ENST00000560467 KANK4Q5T7N3 995 aaPredicted RBP18.16■□□□□ 0.5
LDLR-212ENST00000560467 MED1Q15648 1581 aaPredicted RBP18.16■□□□□ 0.5
LDLR-212ENST00000560467 MAST1Q9Y2H9 1570 aa18.15■□□□□ 0.5
LDLR-212ENST00000560467 DEPDC5O75140 1603 aa18.15■□□□□ 0.5
LDLR-212ENST00000560467 ALKQ9UM73 1620 aa18.15■□□□□ 0.5
LDLR-212ENST00000560467 MROH1Q8NDA8 1641 aa18.13■□□□□ 0.49
LDLR-212ENST00000560467 MYOM3Q5VTT5 1437 aa18.12■□□□□ 0.49
LDLR-212ENST00000560467 SENP3Q9H4L4 574 aaPredicted RBP18.11■□□□□ 0.49
LDLR-212ENST00000560467 IQGAP1P46940 1657 aa18.11■□□□□ 0.49
LDLR-212ENST00000560467 ZC3H13Q5T200 1668 aaKnown RBP18.1■□□□□ 0.49
LDLR-212ENST00000560467 LRRC7Q96NW7 1537 aa18.1■□□□□ 0.49
LDLR-212ENST00000560467 EIF2AK4Q9P2K8 1649 aaKnown RBP18.09■□□□□ 0.49
LDLR-212ENST00000560467 SCAF11Q99590 1463 aaKnown RBP18.07■□□□□ 0.48
LDLR-212ENST00000560467 KIF15Q9NS87 1388 aa18.07■□□□□ 0.48
LDLR-212ENST00000560467 DUOX2Q9NRD8 1548 aa18.07■□□□□ 0.48
LDLR-212ENST00000560467 LTKP29376 864 aa18.06■□□□□ 0.48
LDLR-212ENST00000560467 MAP3K1Q13233 1512 aa18.06■□□□□ 0.48
LDLR-212ENST00000560467 STRCP1A6NGW2 1772 aa18.05■□□□□ 0.48
LDLR-212ENST00000560467 CEP152O94986 1710 aa18.04■□□□□ 0.48
LDLR-212ENST00000560467 PHF23Q9BUL5 403 aaPredicted RBP18.04■□□□□ 0.48
LDLR-212ENST00000560467 RRP7BPQ9NSQ0 103 aa18.04■□□□□ 0.48
LDLR-212ENST00000560467 ABCC5O15440 1437 aa18.04■□□□□ 0.48
LDLR-212ENST00000560467 ARHGAP23Q9P227 1491 aa18.03■□□□□ 0.48
LDLR-212ENST00000560467 TXNDC2Q86VQ3 553 aa18.03■□□□□ 0.48
LDLR-212ENST00000560467 SYNMO15061 1565 aa18.03■□□□□ 0.48
LDLR-212ENST00000560467 PRDM15P57071 1507 aaPredicted RBP18.03■□□□□ 0.48
LDLR-212ENST00000560467 ARHGAP31Q2M1Z3 1444 aa18.02■□□□□ 0.48
LDLR-212ENST00000560467 UBR1Q8IWV7 1749 aa18.02■□□□□ 0.48
LDLR-212ENST00000560467 ERBINQ96RT1 1412 aa18.02■□□□□ 0.48
LDLR-212ENST00000560467 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.02■□□□□ 0.481e-9■□□□□ 9.8
LDLR-212ENST00000560467 SLIT1O75093 1534 aa18.01■□□□□ 0.47
LDLR-212ENST00000560467 DAPK1P53355 1430 aa17.98■□□□□ 0.47
LDLR-212ENST00000560467 TMEM2Q9UHN6 1383 aa17.97■□□□□ 0.47
LDLR-212ENST00000560467 EID1Q9Y6B2 187 aa17.97■□□□□ 0.47
LDLR-212ENST00000560467 PTPN23Q9H3S7 1636 aa17.96■□□□□ 0.47
LDLR-212ENST00000560467 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
LDLR-212ENST00000560467 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
LDLR-212ENST00000560467 CROCC2H7BZ55 1655 aa17.95■□□□□ 0.46
LDLR-212ENST00000560467 KANK1Q14678 1352 aa17.94■□□□□ 0.46
LDLR-212ENST00000560467 STAG3Q9UJ98 1225 aa17.94■□□□□ 0.46
LDLR-212ENST00000560467 FGD6Q6ZV73 1430 aa17.94■□□□□ 0.46
LDLR-212ENST00000560467 PIK3C2BO00750 1634 aa17.94■□□□□ 0.46
LDLR-212ENST00000560467 CFAP65Q6ZU64 1925 aaKnown RBP17.94■□□□□ 0.46
LDLR-212ENST00000560467 IDI1Q13907 227 aa17.92■□□□□ 0.46
LDLR-212ENST00000560467 TMEM94Q12767 1356 aa17.91■□□□□ 0.46
LDLR-212ENST00000560467 ANKRD30AQ9BXX3 1397 aa17.91■□□□□ 0.46
LDLR-212ENST00000560467 EFCAB6Q5THR3 1501 aa17.91■□□□□ 0.46
LDLR-212ENST00000560467 LMTK2Q8IWU2 1503 aa17.91■□□□□ 0.46
LDLR-212ENST00000560467 RGS17Q9UGC6 210 aaPredicted RBP17.9■□□□□ 0.46
LDLR-212ENST00000560467 RBM33Q96EV2 1170 aaKnown RBP17.89■□□□□ 0.45
LDLR-212ENST00000560467 SLC26A8Q96RN1 970 aa17.89■□□□□ 0.45
LDLR-212ENST00000560467 NOS1P29475 1434 aa17.88■□□□□ 0.45
LDLR-212ENST00000560467 FAM135BQ49AJ0 1406 aa17.88■□□□□ 0.45
LDLR-212ENST00000560467 KCNA6P17658 529 aa17.87■□□□□ 0.45
LDLR-212ENST00000560467 XIRP1Q702N8 1843 aaKnown RBP17.86■□□□□ 0.45
LDLR-212ENST00000560467 ADGRB3O60242 1522 aa17.85■□□□□ 0.45
LDLR-212ENST00000560467 TRIM26Q12899 539 aaPredicted RBP17.85■□□□□ 0.45
LDLR-212ENST00000560467 PROSER2Q86WR7 435 aaPredicted RBP17.85■□□□□ 0.45
LDLR-212ENST00000560467 TET3O43151 1660 aa17.84■□□□□ 0.45
LDLR-212ENST00000560467 ADGRL2O95490 1459 aa17.82■□□□□ 0.44
LDLR-212ENST00000560467 KDM5AP29375 1690 aaKnown RBP17.81■□□□□ 0.44
LDLR-212ENST00000560467 FAM50AQ14320 339 aaKnown RBP17.81■□□□□ 0.44
LDLR-212ENST00000560467 BCANQ96GW7 911 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms