RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 EHBP1L1Q8N3D4 1523 aa19.1■□□□□ 0.65
ACTN1-221ENST00000556571 TNRQ92752 1358 aa19.09■□□□□ 0.65
ACTN1-221ENST00000556571 WASHC2CQ9Y4E1 1318 aa19.08■□□□□ 0.65
ACTN1-221ENST00000556571 DNMT1P26358 1616 aaKnown RBP19.07■□□□□ 0.64
ACTN1-221ENST00000556571 TOM1O60784 492 aa19.06■□□□□ 0.64
ACTN1-221ENST00000556571 ANKLE2Q86XL3 938 aa19.06■□□□□ 0.64
ACTN1-221ENST00000556571 PZPP20742 1482 aa19.05■□□□□ 0.64
ACTN1-221ENST00000556571 CCDC141Q6ZP82 1450 aa19.05■□□□□ 0.64
ACTN1-221ENST00000556571 THEMISQ8N1K5 641 aaPredicted RBP19.05■□□□□ 0.64
ACTN1-221ENST00000556571 FAM135AQ9P2D6 1515 aa19.04■□□□□ 0.64
ACTN1-221ENST00000556571 SCAF1Q9H7N4 1312 aaKnown RBP19.03■□□□□ 0.64
ACTN1-221ENST00000556571 TSPY4P0CV99 314 aa19.03■□□□□ 0.64
ACTN1-221ENST00000556571 TSPY10P0CW01 314 aa19.03■□□□□ 0.64
ACTN1-221ENST00000556571 KDM5DQ9BY66 1539 aa19.03■□□□□ 0.64
ACTN1-221ENST00000556571 MIA2Q96PC5 1412 aa19.02■□□□□ 0.64
ACTN1-221ENST00000556571 CPS1P31327 1500 aa19.02■□□□□ 0.64
ACTN1-221ENST00000556571 PIP4K2BP78356 416 aa19.02■□□□□ 0.64
ACTN1-221ENST00000556571 SHANK2Q9UPX8 1470 aa19.02■□□□□ 0.63
ACTN1-221ENST00000556571 HSPA1LP34931 641 aa19.01■□□□□ 0.63
ACTN1-221ENST00000556571 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.01■□□□□ 0.63
ACTN1-221ENST00000556571 NCOA2Q15596 1464 aa19.01■□□□□ 0.63
ACTN1-221ENST00000556571 CAMSAP2Q08AD1 1489 aa19■□□□□ 0.63
ACTN1-221ENST00000556571 NLRP1Q9C000 1473 aa18.99■□□□□ 0.63
ACTN1-221ENST00000556571 NEURL4Q96JN8 1562 aa18.98■□□□□ 0.63
ACTN1-221ENST00000556571 NPHP4O75161 1426 aaPredicted RBP18.96■□□□□ 0.63
ACTN1-221ENST00000556571 POLR1AO95602 1720 aaPredicted RBP18.96■□□□□ 0.63
ACTN1-221ENST00000556571 UGGT1Q9NYU2 1555 aa18.95■□□□□ 0.62
ACTN1-221ENST00000556571 MED14O60244 1454 aa18.95■□□□□ 0.62
ACTN1-221ENST00000556571 ARHGEF5Q12774 1597 aa18.93■□□□□ 0.62
ACTN1-221ENST00000556571 VWDEQ8N2E2 1590 aa18.92■□□□□ 0.62
ACTN1-221ENST00000556571 DEPDC5O75140 1603 aa18.9■□□□□ 0.62
ACTN1-221ENST00000556571 MED1Q15648 1581 aaPredicted RBP18.88■□□□□ 0.61
ACTN1-221ENST00000556571 ABCC3O15438 1527 aa18.87■□□□□ 0.61
ACTN1-221ENST00000556571 LRRC9Q6ZRR7 1453 aa18.85■□□□□ 0.61
ACTN1-221ENST00000556571 PHF23Q9BUL5 403 aaPredicted RBP18.85■□□□□ 0.61
ACTN1-221ENST00000556571 RNF17Q9BXT8 1623 aaKnown RBP18.85■□□□□ 0.61
ACTN1-221ENST00000556571 ERVK-7P63135 1459 aa18.84■□□□□ 0.61
ACTN1-221ENST00000556571 MAST1Q9Y2H9 1570 aa18.84■□□□□ 0.61
ACTN1-221ENST00000556571 IQGAP1P46940 1657 aa18.83■□□□□ 0.61
ACTN1-221ENST00000556571 LRRC7Q96NW7 1537 aa18.83■□□□□ 0.6
ACTN1-221ENST00000556571 ALKQ9UM73 1620 aa18.82■□□□□ 0.6
ACTN1-221ENST00000556571 ZC3H13Q5T200 1668 aaKnown RBP18.82■□□□□ 0.6
ACTN1-221ENST00000556571 VPS8Q8N3P4 1428 aa18.82■□□□□ 0.6
ACTN1-221ENST00000556571 KANK4Q5T7N3 995 aaPredicted RBP18.8■□□□□ 0.6
ACTN1-221ENST00000556571 EIF2AK4Q9P2K8 1649 aaKnown RBP18.8■□□□□ 0.6
ACTN1-221ENST00000556571 MYOM3Q5VTT5 1437 aa18.8■□□□□ 0.6
ACTN1-221ENST00000556571 TXNDC2Q86VQ3 553 aa18.79■□□□□ 0.6
ACTN1-221ENST00000556571 LTKP29376 864 aa18.78■□□□□ 0.6
ACTN1-221ENST00000556571 SENP3Q9H4L4 574 aaPredicted RBP18.78■□□□□ 0.6
ACTN1-221ENST00000556571 SCAF11Q99590 1463 aaKnown RBP18.77■□□□□ 0.6
ACTN1-221ENST00000556571 EID1Q9Y6B2 187 aa18.77■□□□□ 0.6
ACTN1-221ENST00000556571 DUOX2Q9NRD8 1548 aa18.77■□□□□ 0.6
ACTN1-221ENST00000556571 MROH1Q8NDA8 1641 aa18.77■□□□□ 0.6
ACTN1-221ENST00000556571 ARHGAP31Q2M1Z3 1444 aa18.76■□□□□ 0.59
ACTN1-221ENST00000556571 MAP3K1Q13233 1512 aa18.76■□□□□ 0.59
ACTN1-221ENST00000556571 SYNMO15061 1565 aa18.76■□□□□ 0.59
ACTN1-221ENST00000556571 STRCP1A6NGW2 1772 aa18.75■□□□□ 0.59
ACTN1-221ENST00000556571 ARHGAP23Q9P227 1491 aa18.74■□□□□ 0.59
ACTN1-221ENST00000556571 KIF15Q9NS87 1388 aa18.74■□□□□ 0.59
ACTN1-221ENST00000556571 RRP7BPQ9NSQ0 103 aa18.73■□□□□ 0.59
ACTN1-221ENST00000556571 UBR1Q8IWV7 1749 aa18.73■□□□□ 0.59
ACTN1-221ENST00000556571 SLIT1O75093 1534 aa18.73■□□□□ 0.59
ACTN1-221ENST00000556571 LOC105371045A0A1W2PR82 267 aa18.72■□□□□ 0.59
ACTN1-221ENST00000556571 CFAP65Q6ZU64 1925 aaKnown RBP18.71■□□□□ 0.59
ACTN1-221ENST00000556571 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.71■□□□□ 0.593e-8■□□□□ 9.4
ACTN1-221ENST00000556571 STAG3Q9UJ98 1225 aa18.71■□□□□ 0.59
ACTN1-221ENST00000556571 ERBINQ96RT1 1412 aa18.71■□□□□ 0.59
ACTN1-221ENST00000556571 CEP152O94986 1710 aa18.71■□□□□ 0.59
ACTN1-221ENST00000556571 KANK1Q14678 1352 aa18.69■□□□□ 0.58
ACTN1-221ENST00000556571 TMEM2Q9UHN6 1383 aa18.69■□□□□ 0.58
ACTN1-221ENST00000556571 ABCC5O15440 1437 aa18.69■□□□□ 0.58
ACTN1-221ENST00000556571 PRDM15P57071 1507 aaPredicted RBP18.69■□□□□ 0.58
ACTN1-221ENST00000556571 FAM135BQ49AJ0 1406 aa18.66■□□□□ 0.58
ACTN1-221ENST00000556571 IDI1Q13907 227 aa18.66■□□□□ 0.58
ACTN1-221ENST00000556571 KCNA6P17658 529 aa18.65■□□□□ 0.58
ACTN1-221ENST00000556571 APLP2Q06481 763 aa18.65■□□□□ 0.58
ACTN1-221ENST00000556571 RGS17Q9UGC6 210 aaPredicted RBP18.65■□□□□ 0.58
ACTN1-221ENST00000556571 TMEM94Q12767 1356 aa18.63■□□□□ 0.57
ACTN1-221ENST00000556571 DAPK1P53355 1430 aa18.63■□□□□ 0.57
ACTN1-221ENST00000556571 ANKRD30AQ9BXX3 1397 aa18.62■□□□□ 0.57
ACTN1-221ENST00000556571 PIK3C2BO00750 1634 aa18.61■□□□□ 0.57
ACTN1-221ENST00000556571 EFCAB6Q5THR3 1501 aa18.61■□□□□ 0.57
ACTN1-221ENST00000556571 PROSER2Q86WR7 435 aaPredicted RBP18.61■□□□□ 0.57
ACTN1-221ENST00000556571 SLC26A8Q96RN1 970 aa18.61■□□□□ 0.57
ACTN1-221ENST00000556571 LMTK2Q8IWU2 1503 aa18.6■□□□□ 0.57
ACTN1-221ENST00000556571 CHIC2Q9UKJ5 165 aa18.6■□□□□ 0.57
ACTN1-221ENST00000556571 PTPN23Q9H3S7 1636 aa18.6■□□□□ 0.57
ACTN1-221ENST00000556571 SLC52A1Q9NWF4 448 aa18.59■□□□□ 0.57
ACTN1-221ENST00000556571 XIRP1Q702N8 1843 aaKnown RBP18.58■□□□□ 0.57
ACTN1-221ENST00000556571 FGD6Q6ZV73 1430 aa18.57■□□□□ 0.56
ACTN1-221ENST00000556571 CROCC2H7BZ55 1655 aa18.57■□□□□ 0.56
ACTN1-221ENST00000556571 KDM5AP29375 1690 aaKnown RBP18.57■□□□□ 0.56
ACTN1-221ENST00000556571 NOS1P29475 1434 aa18.57■□□□□ 0.56
ACTN1-221ENST00000556571 RBM33Q96EV2 1170 aaKnown RBP18.56■□□□□ 0.56
ACTN1-221ENST00000556571 BCANQ96GW7 911 aa18.56■□□□□ 0.56
ACTN1-221ENST00000556571 TET3O43151 1660 aa18.56■□□□□ 0.56
ACTN1-221ENST00000556571 POTEAQ6S8J7 498 aa18.53■□□□□ 0.56
ACTN1-221ENST00000556571 NKTRP30414 1462 aaKnown RBP18.52■□□□□ 0.56
ACTN1-221ENST00000556571 HDGFP51858 240 aaKnown RBP18.52■□□□□ 0.56
ACTN1-221ENST00000556571 SLAIN2Q9P270 581 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms