RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 NISCHQ9Y2I1 1504 aa30.04■■■□□ 2.4
ACTN1-221ENST00000556571 ABCC9O60706 1549 aa27.31■■□□□ 1.96
ACTN1-221ENST00000556571 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
ACTN1-221ENST00000556571 DNAJC5BQ9UF47 199 aa25.88■■□□□ 1.73
ACTN1-221ENST00000556571 RB1CC1Q8TDY2 1594 aa25.87■■□□□ 1.73
ACTN1-221ENST00000556571 NACADO15069 1562 aa25.65■■□□□ 1.7
ACTN1-221ENST00000556571 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
ACTN1-221ENST00000556571 PABPN1Q86U42 306 aaKnown RBP eCLIP25.44■■□□□ 1.66
ACTN1-221ENST00000556571 MYO15BQ96JP2 1530 aa25.24■■□□□ 1.63
ACTN1-221ENST00000556571 UNC13AQ9UPW8 1703 aa25.15■■□□□ 1.62
ACTN1-221ENST00000556571 BICRAQ9NZM4 1560 aa25.1■■□□□ 1.61
ACTN1-221ENST00000556571 ZCCHC6Q5VYS8 1495 aaKnown RBP24.83■■□□□ 1.56
ACTN1-221ENST00000556571 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
ACTN1-221ENST00000556571 SHROOM4Q9ULL8 1493 aa24.8■■□□□ 1.56
ACTN1-221ENST00000556571 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.54
ACTN1-221ENST00000556571 CC2D2AQ9P2K1 1620 aa24.62■■□□□ 1.53
ACTN1-221ENST00000556571 SCRIBQ14160 1630 aa24.58■■□□□ 1.53
ACTN1-221ENST00000556571 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
ACTN1-221ENST00000556571 DNAJC5Q9H3Z4 198 aa23.99■■□□□ 1.43
ACTN1-221ENST00000556571 NCAPD3P42695 1498 aa23.72■■□□□ 1.39
ACTN1-221ENST00000556571 CUX2O14529 1486 aa23.66■■□□□ 1.38
ACTN1-221ENST00000556571 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
ACTN1-221ENST00000556571 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
ACTN1-221ENST00000556571 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
ACTN1-221ENST00000556571 HMGXB3Q12766 1538 aa23.47■■□□□ 1.35
ACTN1-221ENST00000556571 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
ACTN1-221ENST00000556571 NESP48681 1621 aa23.37■■□□□ 1.33
ACTN1-221ENST00000556571 BAZ1BQ9UIG0 1483 aaKnown RBP23.34■■□□□ 1.33
ACTN1-221ENST00000556571 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
ACTN1-221ENST00000556571 PEG3Q9GZU2 1588 aa23.24■■□□□ 1.31
ACTN1-221ENST00000556571 LAMC3Q9Y6N6 1575 aa23.17■■□□□ 1.3
ACTN1-221ENST00000556571 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.29
ACTN1-221ENST00000556571 MROH2BQ7Z745 1585 aa23.13■■□□□ 1.29
ACTN1-221ENST00000556571 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
ACTN1-221ENST00000556571 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
ACTN1-221ENST00000556571 KIF21AQ7Z4S6 1674 aa22.98■■□□□ 1.27
ACTN1-221ENST00000556571 MRC2Q9UBG0 1479 aa22.88■■□□□ 1.25
ACTN1-221ENST00000556571 TRIM41Q8WV44 630 aa22.81■■□□□ 1.24
ACTN1-221ENST00000556571 WDR62O43379 1518 aa22.81■■□□□ 1.24
ACTN1-221ENST00000556571 WIZO95785 1651 aa22.79■■□□□ 1.24
ACTN1-221ENST00000556571 CEP164Q9UPV0 1460 aa22.74■■□□□ 1.23
ACTN1-221ENST00000556571 FANCD2Q9BXW9 1451 aa22.7■■□□□ 1.22
ACTN1-221ENST00000556571 CFTRP13569 1480 aa22.66■■□□□ 1.22
ACTN1-221ENST00000556571 OSCARQ8IYS5 282 aa22.61■■□□□ 1.21
ACTN1-221ENST00000556571 RSF1Q96T23 1441 aaPredicted RBP22.6■■□□□ 1.21
ACTN1-221ENST00000556571 TOP2AP11388 1531 aaKnown RBP22.53■■□□□ 1.2
ACTN1-221ENST00000556571 URB2Q14146 1524 aaKnown RBP22.51■■□□□ 1.19
ACTN1-221ENST00000556571 IFT140Q96RY7 1462 aa22.32■■□□□ 1.16
ACTN1-221ENST00000556571 CCDC88BA6NC98 1476 aa22.31■■□□□ 1.16
ACTN1-221ENST00000556571 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
ACTN1-221ENST00000556571 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
ACTN1-221ENST00000556571 TOPBP1Q92547 1522 aa22.23■■□□□ 1.15
ACTN1-221ENST00000556571 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
ACTN1-221ENST00000556571 RIMBP3CA6NJZ7 1639 aa22.2■■□□□ 1.15
ACTN1-221ENST00000556571 RIMBP3BA6NNM3 1639 aa22.2■■□□□ 1.15
ACTN1-221ENST00000556571 RIMBP3Q9UFD9 1639 aa22.2■■□□□ 1.15
ACTN1-221ENST00000556571 ARHGEF11O15085 1522 aa22.15■■□□□ 1.14
ACTN1-221ENST00000556571 DNMBPQ6XZF7 1577 aa22.11■■□□□ 1.13
ACTN1-221ENST00000556571 EIF4G3O43432 1585 aaKnown RBP22.08■■□□□ 1.13
ACTN1-221ENST00000556571 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
ACTN1-221ENST00000556571 AQRO60306 1485 aaKnown RBP eCLIP22.08■■□□□ 1.121e-13■□□□□ 8.6
ACTN1-221ENST00000556571 FBLN2P98095 1184 aa22.02■■□□□ 1.12
ACTN1-221ENST00000556571 TARBP1Q13395 1621 aaKnown RBP22.01■■□□□ 1.11
ACTN1-221ENST00000556571 POLA1P09884 1462 aaPredicted RBP21.99■■□□□ 1.11
ACTN1-221ENST00000556571 CHD1O14646 1710 aa21.93■■□□□ 1.1
ACTN1-221ENST00000556571 SOGA1O94964 1423 aa21.93■■□□□ 1.1
ACTN1-221ENST00000556571 RAD54L2Q9Y4B4 1467 aa21.92■■□□□ 1.1
ACTN1-221ENST00000556571 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
ACTN1-221ENST00000556571 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
ACTN1-221ENST00000556571 ARAP1Q96P48 1450 aa21.91■■□□□ 1.1
ACTN1-221ENST00000556571 CHMP7Q8WUX9 453 aaPredicted RBP21.84■■□□□ 1.09
ACTN1-221ENST00000556571 SNAPC4Q5SXM2 1469 aa21.81■■□□□ 1.08
ACTN1-221ENST00000556571 FGD5Q6ZNL6 1462 aa21.81■■□□□ 1.08
ACTN1-221ENST00000556571 WDR97A6NE52 1622 aa21.8■■□□□ 1.08
ACTN1-221ENST00000556571 MAGI1Q96QZ7 1491 aaPredicted RBP21.77■■□□□ 1.07
ACTN1-221ENST00000556571 GRIN2BQ13224 1484 aa21.75■■□□□ 1.07
ACTN1-221ENST00000556571 CLASP1Q7Z460 1538 aa21.74■■□□□ 1.07
ACTN1-221ENST00000556571 CUX1P39880 1505 aa21.73■■□□□ 1.07
ACTN1-221ENST00000556571 SYNJ1O43426 1573 aa21.73■■□□□ 1.07
ACTN1-221ENST00000556571 SYNJ2O15056 1496 aa21.7■■□□□ 1.06
ACTN1-221ENST00000556571 GAPVD1Q14C86 1478 aa21.64■■□□□ 1.05
ACTN1-221ENST00000556571 ABCA10Q8WWZ4 1543 aa21.56■■□□□ 1.04
ACTN1-221ENST00000556571 PBRM1Q86U86 1689 aa21.53■■□□□ 1.04
ACTN1-221ENST00000556571 ABCA5Q8WWZ7 1642 aa21.5■■□□□ 1.03
ACTN1-221ENST00000556571 AEBP2Q6ZN18 517 aaPredicted RBP21.48■■□□□ 1.03
ACTN1-221ENST00000556571 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
ACTN1-221ENST00000556571 SUPT5HO00267 1087 aaKnown RBP21.45■■□□□ 1.02
ACTN1-221ENST00000556571 GRIN2AQ12879 1464 aa21.45■■□□□ 1.02
ACTN1-221ENST00000556571 NUP160Q12769 1436 aa21.4■■□□□ 1.02
ACTN1-221ENST00000556571 FHAD1B1AJZ9 1412 aa21.37■■□□□ 1.01
ACTN1-221ENST00000556571 ERCC6L2Q5T890 1561 aa21.36■■□□□ 1.01
ACTN1-221ENST00000556571 ADAMTS12P58397 1594 aa21.36■■□□□ 1.01
ACTN1-221ENST00000556571 CEP170Q5SW79 1584 aa21.35■■□□□ 1.01
ACTN1-221ENST00000556571 TOP2BQ02880 1626 aa21.32■■□□□ 1
ACTN1-221ENST00000556571 BIVM-ERCC5R4GMW8 1640 aa21.29■■□□□ 1
ACTN1-221ENST00000556571 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
ACTN1-221ENST00000556571 SHROOM2Q13796 1616 aa21.27■■□□□ 1
ACTN1-221ENST00000556571 JPH4Q96JJ6 628 aa21.24■□□□□ 0.99
ACTN1-221ENST00000556571 PRG4Q92954 1404 aaPredicted RBP21.23■□□□□ 0.99
ACTN1-221ENST00000556571 NPM1P06748 294 aaKnown RBP eCLIP21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms