RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 KDM5DQ9BY66 1539 aa21.73■■□□□ 1.07
SS18-204ENST00000539244 PZPP20742 1482 aa21.72■■□□□ 1.07
SS18-204ENST00000539244 KIF3BO15066 747 aa21.72■■□□□ 1.07
SS18-204ENST00000539244 DISP3Q9P2K9 1392 aa21.72■■□□□ 1.07
SS18-204ENST00000539244 TNRQ92752 1358 aa21.69■■□□□ 1.06
SS18-204ENST00000539244 LRRC9Q6ZRR7 1453 aa21.67■■□□□ 1.06
SS18-204ENST00000539244 VPS8Q8N3P4 1428 aa21.67■■□□□ 1.06
SS18-204ENST00000539244 FBXO31Q5XUX0 539 aaPredicted RBP21.66■■□□□ 1.06
SS18-204ENST00000539244 POLR1AO95602 1720 aaPredicted RBP21.66■■□□□ 1.06
SS18-204ENST00000539244 SPATA31D1Q6ZQQ2 1576 aa21.65■■□□□ 1.06
SS18-204ENST00000539244 WASHC2CQ9Y4E1 1318 aa21.65■■□□□ 1.06
SS18-204ENST00000539244 NEURL4Q96JN8 1562 aa21.65■■□□□ 1.06
SS18-204ENST00000539244 MAST1Q9Y2H9 1570 aa21.65■■□□□ 1.06
SS18-204ENST00000539244 TSPY4P0CV99 314 aa21.64■■□□□ 1.05
SS18-204ENST00000539244 TSPY10P0CW01 314 aa21.64■■□□□ 1.05
SS18-204ENST00000539244 ILDR2Q71H61 639 aa21.64■■□□□ 1.05
SS18-204ENST00000539244 NLRP1Q9C000 1473 aa21.63■■□□□ 1.05
SS18-204ENST00000539244 RNF17Q9BXT8 1623 aaKnown RBP21.62■■□□□ 1.05
SS18-204ENST00000539244 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
SS18-204ENST00000539244 MIA2Q96PC5 1412 aa21.62■■□□□ 1.05
SS18-204ENST00000539244 UBAP1LF5GYI3 381 aa21.6■■□□□ 1.05
SS18-204ENST00000539244 ZC3H13Q5T200 1668 aaKnown RBP21.59■■□□□ 1.05
SS18-204ENST00000539244 EIF2AK4Q9P2K8 1649 aaKnown RBP21.58■■□□□ 1.05
SS18-204ENST00000539244 CPS1P31327 1500 aa21.58■■□□□ 1.04
SS18-204ENST00000539244 UGGT1Q9NYU2 1555 aa21.57■■□□□ 1.04
SS18-204ENST00000539244 ABCC3O15438 1527 aa21.57■■□□□ 1.04
SS18-204ENST00000539244 MED14O60244 1454 aa21.57■■□□□ 1.04
SS18-204ENST00000539244 DEPDC5O75140 1603 aa21.56■■□□□ 1.04
SS18-204ENST00000539244 SOCS7O14512 581 aa21.56■■□□□ 1.04
SS18-204ENST00000539244 THEMISQ8N1K5 641 aaPredicted RBP21.56■■□□□ 1.04
SS18-204ENST00000539244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.56■■□□□ 1.04
SS18-204ENST00000539244 SHANK2Q9UPX8 1470 aa21.56■■□□□ 1.04
SS18-204ENST00000539244 MYOM3Q5VTT5 1437 aa21.55■■□□□ 1.04
SS18-204ENST00000539244 ANKLE2Q86XL3 938 aa21.55■■□□□ 1.04
SS18-204ENST00000539244 KANK4Q5T7N3 995 aaPredicted RBP21.54■■□□□ 1.04
SS18-204ENST00000539244 MROH1Q8NDA8 1641 aa21.53■■□□□ 1.04
SS18-204ENST00000539244 VWDEQ8N2E2 1590 aa21.53■■□□□ 1.04
SS18-204ENST00000539244 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.04
SS18-204ENST00000539244 NPHP4O75161 1426 aaPredicted RBP21.51■■□□□ 1.03
SS18-204ENST00000539244 ERVK-7P63135 1459 aa21.51■■□□□ 1.03
SS18-204ENST00000539244 DUOX2Q9NRD8 1548 aa21.5■■□□□ 1.03
SS18-204ENST00000539244 IQGAP1P46940 1657 aa21.48■■□□□ 1.03
SS18-204ENST00000539244 TOM1O60784 492 aa21.46■■□□□ 1.03
SS18-204ENST00000539244 CEP152O94986 1710 aa21.46■■□□□ 1.03
SS18-204ENST00000539244 PRDM15P57071 1507 aaPredicted RBP21.44■■□□□ 1.02
SS18-204ENST00000539244 CROCC2H7BZ55 1655 aa21.44■■□□□ 1.02
SS18-204ENST00000539244 ARHGAP31Q2M1Z3 1444 aa21.43■■□□□ 1.02
SS18-204ENST00000539244 UBR1Q8IWV7 1749 aa21.43■■□□□ 1.02
SS18-204ENST00000539244 ERBINQ96RT1 1412 aa21.42■■□□□ 1.02
SS18-204ENST00000539244 ABCC5O15440 1437 aa21.41■■□□□ 1.02
SS18-204ENST00000539244 KIF15Q9NS87 1388 aa21.41■■□□□ 1.02
SS18-204ENST00000539244 ALKQ9UM73 1620 aa21.4■■□□□ 1.02
SS18-204ENST00000539244 CFAP65Q6ZU64 1925 aaKnown RBP21.4■■□□□ 1.02
SS18-204ENST00000539244 HSPA1LP34931 641 aa21.4■■□□□ 1.02
SS18-204ENST00000539244 STRCP1A6NGW2 1772 aa21.4■■□□□ 1.02
SS18-204ENST00000539244 PTPN23Q9H3S7 1636 aa21.4■■□□□ 1.02
SS18-204ENST00000539244 PIP4K2BP78356 416 aa21.39■■□□□ 1.01
SS18-204ENST00000539244 ARHGAP23Q9P227 1491 aa21.39■■□□□ 1.01
SS18-204ENST00000539244 SYNMO15061 1565 aa21.38■■□□□ 1.01
SS18-204ENST00000539244 SLIT1O75093 1534 aa21.38■■□□□ 1.01
SS18-204ENST00000539244 SCAF1Q9H7N4 1312 aaKnown RBP21.37■■□□□ 1.01
SS18-204ENST00000539244 LRRC7Q96NW7 1537 aa21.37■■□□□ 1.01
SS18-204ENST00000539244 SCAF11Q99590 1463 aaKnown RBP21.37■■□□□ 1.01
SS18-204ENST00000539244 DAPK1P53355 1430 aa21.36■■□□□ 1.01
SS18-204ENST00000539244 MED1Q15648 1581 aaPredicted RBP21.35■■□□□ 1.01
SS18-204ENST00000539244 RRP7BPQ9NSQ0 103 aa21.34■■□□□ 1.01
SS18-204ENST00000539244 FGD6Q6ZV73 1430 aa21.34■■□□□ 1.01
SS18-204ENST00000539244 LMTK2Q8IWU2 1503 aa21.31■■□□□ 1
SS18-204ENST00000539244 LTKP29376 864 aa21.31■■□□□ 1
SS18-204ENST00000539244 APLP2Q06481 763 aa21.31■■□□□ 1
SS18-204ENST00000539244 KDM5AP29375 1690 aaKnown RBP21.3■■□□□ 1
SS18-204ENST00000539244 PIK3C2BO00750 1634 aa21.29■■□□□ 1
SS18-204ENST00000539244 KANK1Q14678 1352 aa21.29■■□□□ 1
SS18-204ENST00000539244 ANKRD30AQ9BXX3 1397 aa21.28■■□□□ 1
SS18-204ENST00000539244 TXNDC2Q86VQ3 553 aa21.28■■□□□ 1
SS18-204ENST00000539244 TMEM2Q9UHN6 1383 aa21.26■□□□□ 0.99
SS18-204ENST00000539244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.26■□□□□ 0.992e-7■■■□□ 19
SS18-204ENST00000539244 EID1Q9Y6B2 187 aa21.25■□□□□ 0.99
SS18-204ENST00000539244 ADGRL2O95490 1459 aa21.24■□□□□ 0.99
SS18-204ENST00000539244 EFCAB6Q5THR3 1501 aa21.24■□□□□ 0.99
SS18-204ENST00000539244 XIRP1Q702N8 1843 aaKnown RBP21.23■□□□□ 0.99
SS18-204ENST00000539244 NOS1P29475 1434 aa21.22■□□□□ 0.99
SS18-204ENST00000539244 IDI1Q13907 227 aa21.21■□□□□ 0.99
SS18-204ENST00000539244 CHIC2Q9UKJ5 165 aa21.21■□□□□ 0.99
SS18-204ENST00000539244 STAG3Q9UJ98 1225 aa21.18■□□□□ 0.98
SS18-204ENST00000539244 TET3O43151 1660 aa21.18■□□□□ 0.98
SS18-204ENST00000539244 ADGRB3O60242 1522 aa21.17■□□□□ 0.98
SS18-204ENST00000539244 RPRD2Q5VT52 1461 aaKnown RBP21.16■□□□□ 0.98
SS18-204ENST00000539244 SLC52A1Q9NWF4 448 aa21.15■□□□□ 0.98
SS18-204ENST00000539244 ANKRD50Q9ULJ7 1429 aa21.13■□□□□ 0.97
SS18-204ENST00000539244 KCNA6P17658 529 aa21.13■□□□□ 0.97
SS18-204ENST00000539244 FAM135BQ49AJ0 1406 aa21.12■□□□□ 0.97
SS18-204ENST00000539244 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
SS18-204ENST00000539244 TMEM94Q12767 1356 aa21.11■□□□□ 0.97
SS18-204ENST00000539244 NWD1Q149M9 1564 aa21.11■□□□□ 0.97
SS18-204ENST00000539244 NKTRP30414 1462 aaKnown RBP21.1■□□□□ 0.97
SS18-204ENST00000539244 FAM50AQ14320 339 aaKnown RBP21.08■□□□□ 0.97
SS18-204ENST00000539244 SLC26A8Q96RN1 970 aa21.08■□□□□ 0.97
SS18-204ENST00000539244 ZFYVE9O95405 1425 aa21.07■□□□□ 0.96
SS18-204ENST00000539244 SENP3Q9H4L4 574 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms