RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PCGF6Q9BYE7 350 aa13.04□□□□□ -0.32
NEDD8-207ENST00000533242 NEURL4Q96JN8 1562 aa13.03□□□□□ -0.32
NEDD8-207ENST00000533242 DHX29Q7Z478 1369 aaKnown RBP13.02□□□□□ -0.32
NEDD8-207ENST00000533242 KDM5DQ9BY66 1539 aa13.01□□□□□ -0.33
NEDD8-207ENST00000533242 TNRQ92752 1358 aa13.01□□□□□ -0.33
NEDD8-207ENST00000533242 PZPP20742 1482 aa13.01□□□□□ -0.33
NEDD8-207ENST00000533242 MED1Q15648 1581 aaPredicted RBP13□□□□□ -0.33
NEDD8-207ENST00000533242 SHANK2Q9UPX8 1470 aa13□□□□□ -0.33
NEDD8-207ENST00000533242 CEP162Q5TB80 1403 aa13□□□□□ -0.33
NEDD8-207ENST00000533242 ZNF644Q9H582 1327 aaPredicted RBP13□□□□□ -0.33
NEDD8-207ENST00000533242 DEPDC5O75140 1603 aa12.99□□□□□ -0.33
NEDD8-207ENST00000533242 VWDEQ8N2E2 1590 aa12.98□□□□□ -0.33
NEDD8-207ENST00000533242 CCDC141Q6ZP82 1450 aa12.98□□□□□ -0.33
NEDD8-207ENST00000533242 TOM1O60784 492 aa12.97□□□□□ -0.33
NEDD8-207ENST00000533242 NLRP1Q9C000 1473 aa12.96□□□□□ -0.33
NEDD8-207ENST00000533242 HSPA1LP34931 641 aa12.96□□□□□ -0.33
NEDD8-207ENST00000533242 KIF3BO15066 747 aa12.96□□□□□ -0.34
NEDD8-207ENST00000533242 MED14O60244 1454 aa12.96□□□□□ -0.34
NEDD8-207ENST00000533242 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.34
NEDD8-207ENST00000533242 ARHGEF5Q12774 1597 aa12.95□□□□□ -0.34
NEDD8-207ENST00000533242 FBXO31Q5XUX0 539 aaPredicted RBP12.95□□□□□ -0.34
NEDD8-207ENST00000533242 IQGAP1P46940 1657 aa12.95□□□□□ -0.34
NEDD8-207ENST00000533242 HRCP23327 699 aa12.95□□□□□ -0.34
NEDD8-207ENST00000533242 RSPH4AQ5TD94 716 aa12.95□□□□□ -0.34
NEDD8-207ENST00000533242 ANKLE2Q86XL3 938 aa12.95□□□□□ -0.34
NEDD8-207ENST00000533242 SCAF1Q9H7N4 1312 aaKnown RBP12.94□□□□□ -0.34
NEDD8-207ENST00000533242 UGGT1Q9NYU2 1555 aa12.94□□□□□ -0.34
NEDD8-207ENST00000533242 ZC3H13Q5T200 1668 aaKnown RBP12.94□□□□□ -0.34
NEDD8-207ENST00000533242 NPHP4O75161 1426 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-207ENST00000533242 MIA2Q96PC5 1412 aa12.94□□□□□ -0.34
NEDD8-207ENST00000533242 PIP4K2BP78356 416 aa12.94□□□□□ -0.34
NEDD8-207ENST00000533242 THEMISQ8N1K5 641 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-207ENST00000533242 RNF17Q9BXT8 1623 aaKnown RBP12.93□□□□□ -0.34
NEDD8-207ENST00000533242 ALKQ9UM73 1620 aa12.93□□□□□ -0.34
NEDD8-207ENST00000533242 WASHC2CQ9Y4E1 1318 aa12.93□□□□□ -0.34
NEDD8-207ENST00000533242 NCOA2Q15596 1464 aa12.93□□□□□ -0.34
NEDD8-207ENST00000533242 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.93□□□□□ -0.34
NEDD8-207ENST00000533242 SYNMO15061 1565 aa12.92□□□□□ -0.34
NEDD8-207ENST00000533242 STRCP1A6NGW2 1772 aa12.92□□□□□ -0.34
NEDD8-207ENST00000533242 EIF2AK4Q9P2K8 1649 aaKnown RBP12.91□□□□□ -0.34
NEDD8-207ENST00000533242 MAST1Q9Y2H9 1570 aa12.91□□□□□ -0.34
NEDD8-207ENST00000533242 ABCC3O15438 1527 aa12.89□□□□□ -0.35
NEDD8-207ENST00000533242 UBR1Q8IWV7 1749 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 LRRC7Q96NW7 1537 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 CEP152O94986 1710 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 TSPY4P0CV99 314 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 TSPY10P0CW01 314 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 ERVK-7P63135 1459 aa12.87□□□□□ -0.35
NEDD8-207ENST00000533242 MROH1Q8NDA8 1641 aa12.86□□□□□ -0.35
NEDD8-207ENST00000533242 PHF23Q9BUL5 403 aaPredicted RBP12.85□□□□□ -0.35
NEDD8-207ENST00000533242 CFAP65Q6ZU64 1925 aaKnown RBP12.84□□□□□ -0.35
NEDD8-207ENST00000533242 XIRP1Q702N8 1843 aaKnown RBP12.83□□□□□ -0.36
NEDD8-207ENST00000533242 SCAF11Q99590 1463 aaKnown RBP12.82□□□□□ -0.36
NEDD8-207ENST00000533242 ARHGAP23Q9P227 1491 aa12.81□□□□□ -0.36
NEDD8-207ENST00000533242 SLIT1O75093 1534 aa12.81□□□□□ -0.36
NEDD8-207ENST00000533242 LRRC9Q6ZRR7 1453 aa12.81□□□□□ -0.36
NEDD8-207ENST00000533242 DUOX2Q9NRD8 1548 aa12.81□□□□□ -0.36
NEDD8-207ENST00000533242 PPARGC1BQ86YN6 1023 aaKnown RBP12.78□□□□□ -0.36
NEDD8-207ENST00000533242 PRDM15P57071 1507 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-207ENST00000533242 ARHGAP31Q2M1Z3 1444 aa12.78□□□□□ -0.36
NEDD8-207ENST00000533242 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
NEDD8-207ENST00000533242 KDM5AP29375 1690 aaKnown RBP12.78□□□□□ -0.36
NEDD8-207ENST00000533242 MAP3K1Q13233 1512 aa12.77□□□□□ -0.36
NEDD8-207ENST00000533242 PIK3C2BO00750 1634 aa12.77□□□□□ -0.37
NEDD8-207ENST00000533242 MYOM3Q5VTT5 1437 aa12.76□□□□□ -0.37
NEDD8-207ENST00000533242 VPS8Q8N3P4 1428 aa12.76□□□□□ -0.37
NEDD8-207ENST00000533242 TRIM26Q12899 539 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-207ENST00000533242 LTKP29376 864 aa12.75□□□□□ -0.37
NEDD8-207ENST00000533242 TXNDC2Q86VQ3 553 aa12.75□□□□□ -0.37
NEDD8-207ENST00000533242 SENP3Q9H4L4 574 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-207ENST00000533242 ERBINQ96RT1 1412 aa12.74□□□□□ -0.37
NEDD8-207ENST00000533242 EID1Q9Y6B2 187 aa12.73□□□□□ -0.37
NEDD8-207ENST00000533242 FAM135BQ49AJ0 1406 aa12.73□□□□□ -0.37
NEDD8-207ENST00000533242 RGS17Q9UGC6 210 aaPredicted RBP12.72□□□□□ -0.37
NEDD8-207ENST00000533242 KIF15Q9NS87 1388 aa12.72□□□□□ -0.37
NEDD8-207ENST00000533242 TMEM2Q9UHN6 1383 aa12.72□□□□□ -0.37
NEDD8-207ENST00000533242 EFCAB6Q5THR3 1501 aa12.71□□□□□ -0.37
NEDD8-207ENST00000533242 ROBO1Q9Y6N7 1651 aa12.71□□□□□ -0.38
NEDD8-207ENST00000533242 PTPN23Q9H3S7 1636 aa12.71□□□□□ -0.38
NEDD8-207ENST00000533242 LMTK2Q8IWU2 1503 aa12.7□□□□□ -0.38
NEDD8-207ENST00000533242 KANK4Q5T7N3 995 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-207ENST00000533242 TET3O43151 1660 aa12.69□□□□□ -0.38
NEDD8-207ENST00000533242 ABCC5O15440 1437 aa12.69□□□□□ -0.38
NEDD8-207ENST00000533242 KANK1Q14678 1352 aa12.69□□□□□ -0.38
NEDD8-207ENST00000533242 NWD1Q149M9 1564 aa12.69□□□□□ -0.38
NEDD8-207ENST00000533242 KCNA6P17658 529 aa12.68□□□□□ -0.38
NEDD8-207ENST00000533242 TMEM94Q12767 1356 aa12.68□□□□□ -0.38
NEDD8-207ENST00000533242 STAG3Q9UJ98 1225 aa12.67□□□□□ -0.38
NEDD8-207ENST00000533242 ADGRB3O60242 1522 aa12.67□□□□□ -0.38
NEDD8-207ENST00000533242 NKTRP30414 1462 aaKnown RBP12.67□□□□□ -0.38
NEDD8-207ENST00000533242 DAPK1P53355 1430 aa12.66□□□□□ -0.38
NEDD8-207ENST00000533242 RRP7BPQ9NSQ0 103 aa12.66□□□□□ -0.38
NEDD8-207ENST00000533242 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.66□□□□□ -0.383e-7■■■□□ 16.4
NEDD8-207ENST00000533242 PHLPP1O60346 1717 aa12.65□□□□□ -0.38
NEDD8-207ENST00000533242 IDI1Q13907 227 aa12.65□□□□□ -0.39
NEDD8-207ENST00000533242 PROSER2Q86WR7 435 aaPredicted RBP12.65□□□□□ -0.39
NEDD8-207ENST00000533242 NOS1P29475 1434 aa12.64□□□□□ -0.39
NEDD8-207ENST00000533242 POTEAQ6S8J7 498 aa12.64□□□□□ -0.39
NEDD8-207ENST00000533242 CHD2O14647 1828 aaKnown RBP12.64□□□□□ -0.39
NEDD8-207ENST00000533242 MYO5BQ9ULV0 1848 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms