RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PPP6R1Q9UPN7 881 aa23.08■■□□□ 1.29
CPSF1-201ENST00000526271 PKD2Q13563 968 aa23.06■■□□□ 1.28
CPSF1-201ENST00000526271 POLR1AO95602 1720 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-201ENST00000526271 ARHGEF5Q12774 1597 aa23.05■■□□□ 1.28
CPSF1-201ENST00000526271 PZPP20742 1482 aa23.05■■□□□ 1.28
CPSF1-201ENST00000526271 KDM5DQ9BY66 1539 aa23.04■■□□□ 1.28
CPSF1-201ENST00000526271 KIF3BO15066 747 aa23.02■■□□□ 1.28
CPSF1-201ENST00000526271 TNRQ92752 1358 aa23.01■■□□□ 1.27
CPSF1-201ENST00000526271 FAM135AQ9P2D6 1515 aa22.99■■□□□ 1.27
CPSF1-201ENST00000526271 MROH1Q8NDA8 1641 aa22.99■■□□□ 1.27
CPSF1-201ENST00000526271 RNF17Q9BXT8 1623 aaKnown RBP22.98■■□□□ 1.27
CPSF1-201ENST00000526271 LRRC9Q6ZRR7 1453 aa22.98■■□□□ 1.27
CPSF1-201ENST00000526271 VWDEQ8N2E2 1590 aa22.97■■□□□ 1.27
CPSF1-201ENST00000526271 ALKQ9UM73 1620 aa22.97■■□□□ 1.27
CPSF1-201ENST00000526271 MAST1Q9Y2H9 1570 aa22.96■■□□□ 1.27
CPSF1-201ENST00000526271 UBAP1LF5GYI3 381 aa22.95■■□□□ 1.26
CPSF1-201ENST00000526271 SOCS7O14512 581 aa22.94■■□□□ 1.26
CPSF1-201ENST00000526271 KANK4Q5T7N3 995 aaPredicted RBP22.94■■□□□ 1.26
CPSF1-201ENST00000526271 STRCP1A6NGW2 1772 aa22.94■■□□□ 1.26
CPSF1-201ENST00000526271 ABCC3O15438 1527 aa22.93■■□□□ 1.26
CPSF1-201ENST00000526271 VPS8Q8N3P4 1428 aa22.93■■□□□ 1.26
CPSF1-201ENST00000526271 MIA2Q96PC5 1412 aa22.93■■□□□ 1.26
CPSF1-201ENST00000526271 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.93■■□□□ 1.26
CPSF1-201ENST00000526271 LOC105371045A0A1W2PR82 267 aa22.93■■□□□ 1.26
CPSF1-201ENST00000526271 SHANK2Q9UPX8 1470 aa22.91■■□□□ 1.26
CPSF1-201ENST00000526271 WASHC2CQ9Y4E1 1318 aa22.9■■□□□ 1.26
CPSF1-201ENST00000526271 RSPH4AQ5TD94 716 aa22.9■■□□□ 1.26
CPSF1-201ENST00000526271 DEPDC5O75140 1603 aa22.9■■□□□ 1.26
CPSF1-201ENST00000526271 UGGT1Q9NYU2 1555 aa22.89■■□□□ 1.26
CPSF1-201ENST00000526271 CEP152O94986 1710 aa22.89■■□□□ 1.26
CPSF1-201ENST00000526271 MED14O60244 1454 aa22.89■■□□□ 1.25
CPSF1-201ENST00000526271 NLRP1Q9C000 1473 aa22.88■■□□□ 1.25
CPSF1-201ENST00000526271 EIF2AK4Q9P2K8 1649 aaKnown RBP22.87■■□□□ 1.25
CPSF1-201ENST00000526271 CFAP65Q6ZU64 1925 aaKnown RBP22.87■■□□□ 1.25
CPSF1-201ENST00000526271 CPS1P31327 1500 aa22.87■■□□□ 1.25
CPSF1-201ENST00000526271 ZC3H13Q5T200 1668 aaKnown RBP22.87■■□□□ 1.25
CPSF1-201ENST00000526271 ERVK-7P63135 1459 aa22.85■■□□□ 1.25
CPSF1-201ENST00000526271 MAP3K1Q13233 1512 aa22.85■■□□□ 1.25
CPSF1-201ENST00000526271 NPHP4O75161 1426 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-201ENST00000526271 IQGAP1P46940 1657 aa22.84■■□□□ 1.25
CPSF1-201ENST00000526271 MYOM3Q5VTT5 1437 aa22.82■■□□□ 1.24
CPSF1-201ENST00000526271 HSPA1LP34931 641 aa22.82■■□□□ 1.24
CPSF1-201ENST00000526271 UBR1Q8IWV7 1749 aa22.82■■□□□ 1.24
CPSF1-201ENST00000526271 TSPY4P0CV99 314 aa22.81■■□□□ 1.24
CPSF1-201ENST00000526271 TSPY10P0CW01 314 aa22.81■■□□□ 1.24
CPSF1-201ENST00000526271 ANKLE2Q86XL3 938 aa22.8■■□□□ 1.24
CPSF1-201ENST00000526271 CROCC2H7BZ55 1655 aa22.8■■□□□ 1.24
CPSF1-201ENST00000526271 MED1Q15648 1581 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-201ENST00000526271 THEMISQ8N1K5 641 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-201ENST00000526271 ABCC5O15440 1437 aa22.76■■□□□ 1.23
CPSF1-201ENST00000526271 PRDM15P57071 1507 aaPredicted RBP22.76■■□□□ 1.23
CPSF1-201ENST00000526271 DUOX2Q9NRD8 1548 aa22.76■■□□□ 1.23
CPSF1-201ENST00000526271 PIP4K2BP78356 416 aa22.75■■□□□ 1.23
CPSF1-201ENST00000526271 LRRC7Q96NW7 1537 aa22.75■■□□□ 1.23
CPSF1-201ENST00000526271 ARHGAP23Q9P227 1491 aa22.73■■□□□ 1.23
CPSF1-201ENST00000526271 XIRP1Q702N8 1843 aaKnown RBP22.73■■□□□ 1.23
CPSF1-201ENST00000526271 PTPN23Q9H3S7 1636 aa22.71■■□□□ 1.23
CPSF1-201ENST00000526271 LTKP29376 864 aa22.7■■□□□ 1.22
CPSF1-201ENST00000526271 SLIT1O75093 1534 aa22.7■■□□□ 1.22
CPSF1-201ENST00000526271 ARHGAP31Q2M1Z3 1444 aa22.69■■□□□ 1.22
CPSF1-201ENST00000526271 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
CPSF1-201ENST00000526271 SCAF1Q9H7N4 1312 aaKnown RBP22.69■■□□□ 1.22
CPSF1-201ENST00000526271 PIK3C2BO00750 1634 aa22.68■■□□□ 1.22
CPSF1-201ENST00000526271 SYNMO15061 1565 aa22.68■■□□□ 1.22
CPSF1-201ENST00000526271 TOM1O60784 492 aa22.68■■□□□ 1.22
CPSF1-201ENST00000526271 SCAF11Q99590 1463 aaKnown RBP22.67■■□□□ 1.22
CPSF1-201ENST00000526271 DAPK1P53355 1430 aa22.66■■□□□ 1.22
CPSF1-201ENST00000526271 ERBINQ96RT1 1412 aa22.65■■□□□ 1.22
CPSF1-201ENST00000526271 RRP7BPQ9NSQ0 103 aa22.63■■□□□ 1.21
CPSF1-201ENST00000526271 FGD6Q6ZV73 1430 aa22.61■■□□□ 1.21
CPSF1-201ENST00000526271 LMTK2Q8IWU2 1503 aa22.6■■□□□ 1.21
CPSF1-201ENST00000526271 TXNDC2Q86VQ3 553 aa22.57■■□□□ 1.2
CPSF1-201ENST00000526271 KDM5AP29375 1690 aaKnown RBP22.56■■□□□ 1.2
CPSF1-201ENST00000526271 TMEM2Q9UHN6 1383 aa22.56■■□□□ 1.2
CPSF1-201ENST00000526271 TET3O43151 1660 aa22.55■■□□□ 1.2
CPSF1-201ENST00000526271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.55■■□□□ 1.24e-8■■■□□ 18.5
CPSF1-201ENST00000526271 SENP3Q9H4L4 574 aaPredicted RBP22.54■■□□□ 1.2
CPSF1-201ENST00000526271 NOS1P29475 1434 aa22.54■■□□□ 1.2
CPSF1-201ENST00000526271 EFCAB6Q5THR3 1501 aa22.53■■□□□ 1.2
CPSF1-201ENST00000526271 IDI1Q13907 227 aa22.53■■□□□ 1.2
CPSF1-201ENST00000526271 CHIC2Q9UKJ5 165 aa22.53■■□□□ 1.2
CPSF1-201ENST00000526271 ADGRL2O95490 1459 aa22.51■■□□□ 1.19
CPSF1-201ENST00000526271 MYO5BQ9ULV0 1848 aa22.5■■□□□ 1.19
CPSF1-201ENST00000526271 RGS17Q9UGC6 210 aaPredicted RBP22.48■■□□□ 1.19
CPSF1-201ENST00000526271 ADGRB3O60242 1522 aa22.47■■□□□ 1.19
CPSF1-201ENST00000526271 ANKRD30AQ9BXX3 1397 aa22.47■■□□□ 1.19
CPSF1-201ENST00000526271 NWD1Q149M9 1564 aa22.45■■□□□ 1.18
CPSF1-201ENST00000526271 TMEM94Q12767 1356 aa22.44■■□□□ 1.18
CPSF1-201ENST00000526271 RBM33Q96EV2 1170 aaKnown RBP22.44■■□□□ 1.18
CPSF1-201ENST00000526271 KANK1Q14678 1352 aa22.43■■□□□ 1.18
CPSF1-201ENST00000526271 SLC26A8Q96RN1 970 aa22.42■■□□□ 1.18
CPSF1-201ENST00000526271 ZFYVE9O95405 1425 aa22.41■■□□□ 1.18
CPSF1-201ENST00000526271 EID1Q9Y6B2 187 aa22.41■■□□□ 1.18
CPSF1-201ENST00000526271 ROBO1Q9Y6N7 1651 aa22.41■■□□□ 1.18
CPSF1-201ENST00000526271 FAM135BQ49AJ0 1406 aa22.4■■□□□ 1.18
CPSF1-201ENST00000526271 GCC2Q8IWJ2 1684 aa22.4■■□□□ 1.18
CPSF1-201ENST00000526271 KCNA6P17658 529 aa22.39■■□□□ 1.17
CPSF1-201ENST00000526271 TMEM131LA2VDJ0 1609 aa22.39■■□□□ 1.17
CPSF1-201ENST00000526271 CHD2O14647 1828 aaKnown RBP22.38■■□□□ 1.17
CPSF1-201ENST00000526271 ANKRD50Q9ULJ7 1429 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms