RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 DNMT1P26358 1616 aaKnown RBP22.82■■□□□ 1.24
VARS-228ENST00000495010 TNRQ92752 1358 aa22.81■■□□□ 1.24
VARS-228ENST00000495010 WASHC2CQ9Y4E1 1318 aa22.81■■□□□ 1.24
VARS-228ENST00000495010 FBXO31Q5XUX0 539 aaPredicted RBP22.8■■□□□ 1.24
VARS-228ENST00000495010 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
VARS-228ENST00000495010 CCDC141Q6ZP82 1450 aa22.79■■□□□ 1.24
VARS-228ENST00000495010 KDM5DQ9BY66 1539 aa22.77■■□□□ 1.24
VARS-228ENST00000495010 TSPY4P0CV99 314 aa22.76■■□□□ 1.23
VARS-228ENST00000495010 TSPY10P0CW01 314 aa22.76■■□□□ 1.23
VARS-228ENST00000495010 CAMSAP2Q08AD1 1489 aa22.76■■□□□ 1.23
VARS-228ENST00000495010 PZPP20742 1482 aa22.75■■□□□ 1.23
VARS-228ENST00000495010 NCOA2Q15596 1464 aa22.75■■□□□ 1.23
VARS-228ENST00000495010 TOM1O60784 492 aa22.75■■□□□ 1.23
VARS-228ENST00000495010 ANKLE2Q86XL3 938 aa22.75■■□□□ 1.23
VARS-228ENST00000495010 FAM135AQ9P2D6 1515 aa22.75■■□□□ 1.23
VARS-228ENST00000495010 POLR1AO95602 1720 aaPredicted RBP22.74■■□□□ 1.23
VARS-228ENST00000495010 PIP4K2BP78356 416 aa22.74■■□□□ 1.23
VARS-228ENST00000495010 THEMISQ8N1K5 641 aaPredicted RBP22.74■■□□□ 1.23
VARS-228ENST00000495010 CPS1P31327 1500 aa22.72■■□□□ 1.23
VARS-228ENST00000495010 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.71■■□□□ 1.23
VARS-228ENST00000495010 SHANK2Q9UPX8 1470 aa22.71■■□□□ 1.23
VARS-228ENST00000495010 MIA2Q96PC5 1412 aa22.7■■□□□ 1.22
VARS-228ENST00000495010 NEURL4Q96JN8 1562 aa22.69■■□□□ 1.22
VARS-228ENST00000495010 NLRP1Q9C000 1473 aa22.68■■□□□ 1.22
VARS-228ENST00000495010 UGGT1Q9NYU2 1555 aa22.67■■□□□ 1.22
VARS-228ENST00000495010 HSPA1LP34931 641 aa22.67■■□□□ 1.22
VARS-228ENST00000495010 ARHGEF5Q12774 1597 aa22.67■■□□□ 1.22
VARS-228ENST00000495010 NPHP4O75161 1426 aaPredicted RBP22.65■■□□□ 1.22
VARS-228ENST00000495010 DEPDC5O75140 1603 aa22.6■■□□□ 1.21
VARS-228ENST00000495010 MED14O60244 1454 aa22.6■■□□□ 1.21
VARS-228ENST00000495010 VWDEQ8N2E2 1590 aa22.59■■□□□ 1.21
VARS-228ENST00000495010 LRRC9Q6ZRR7 1453 aa22.57■■□□□ 1.2
VARS-228ENST00000495010 MED1Q15648 1581 aaPredicted RBP22.57■■□□□ 1.2
VARS-228ENST00000495010 ZC3H13Q5T200 1668 aaKnown RBP22.57■■□□□ 1.2
VARS-228ENST00000495010 RNF17Q9BXT8 1623 aaKnown RBP22.57■■□□□ 1.2
VARS-228ENST00000495010 ABCC3O15438 1527 aa22.57■■□□□ 1.2
VARS-228ENST00000495010 IQGAP1P46940 1657 aa22.56■■□□□ 1.2
VARS-228ENST00000495010 MAST1Q9Y2H9 1570 aa22.55■■□□□ 1.2
VARS-228ENST00000495010 PHF23Q9BUL5 403 aaPredicted RBP22.54■■□□□ 1.2
VARS-228ENST00000495010 VPS8Q8N3P4 1428 aa22.54■■□□□ 1.2
VARS-228ENST00000495010 EIF2AK4Q9P2K8 1649 aaKnown RBP22.53■■□□□ 1.2
VARS-228ENST00000495010 ERVK-7P63135 1459 aa22.53■■□□□ 1.2
VARS-228ENST00000495010 SENP3Q9H4L4 574 aaPredicted RBP22.51■■□□□ 1.19
VARS-228ENST00000495010 MYOM3Q5VTT5 1437 aa22.48■■□□□ 1.19
VARS-228ENST00000495010 KANK4Q5T7N3 995 aaPredicted RBP22.48■■□□□ 1.19
VARS-228ENST00000495010 LRRC7Q96NW7 1537 aa22.47■■□□□ 1.19
VARS-228ENST00000495010 DUOX2Q9NRD8 1548 aa22.47■■□□□ 1.19
VARS-228ENST00000495010 CEP152O94986 1710 aa22.47■■□□□ 1.19
VARS-228ENST00000495010 CFAP65Q6ZU64 1925 aaKnown RBP22.46■■□□□ 1.19
VARS-228ENST00000495010 SYNMO15061 1565 aa22.46■■□□□ 1.19
VARS-228ENST00000495010 TXNDC2Q86VQ3 553 aa22.45■■□□□ 1.18
VARS-228ENST00000495010 MROH1Q8NDA8 1641 aa22.45■■□□□ 1.18
VARS-228ENST00000495010 LOC105371045A0A1W2PR82 267 aa22.44■■□□□ 1.18
VARS-228ENST00000495010 STRCP1A6NGW2 1772 aa22.44■■□□□ 1.18
VARS-228ENST00000495010 MAP3K1Q13233 1512 aa22.44■■□□□ 1.18
VARS-228ENST00000495010 SCAF11Q99590 1463 aaKnown RBP22.44■■□□□ 1.18
VARS-228ENST00000495010 ALKQ9UM73 1620 aa22.44■■□□□ 1.18
VARS-228ENST00000495010 EID1Q9Y6B2 187 aa22.44■■□□□ 1.18
VARS-228ENST00000495010 UBR1Q8IWV7 1749 aa22.43■■□□□ 1.18
VARS-228ENST00000495010 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.42■■□□□ 1.186e-11■■■□□ 16.3
VARS-228ENST00000495010 STAG3Q9UJ98 1225 aa22.42■■□□□ 1.18
VARS-228ENST00000495010 KIF15Q9NS87 1388 aa22.41■■□□□ 1.18
VARS-228ENST00000495010 RRP7BPQ9NSQ0 103 aa22.41■■□□□ 1.18
VARS-228ENST00000495010 LTKP29376 864 aa22.4■■□□□ 1.18
VARS-228ENST00000495010 APLP2Q06481 763 aa22.4■■□□□ 1.18
VARS-228ENST00000495010 ARHGAP31Q2M1Z3 1444 aa22.39■■□□□ 1.17
VARS-228ENST00000495010 ERBINQ96RT1 1412 aa22.39■■□□□ 1.17
VARS-228ENST00000495010 KANK1Q14678 1352 aa22.38■■□□□ 1.17
VARS-228ENST00000495010 SLIT1O75093 1534 aa22.37■■□□□ 1.17
VARS-228ENST00000495010 PRDM15P57071 1507 aaPredicted RBP22.36■■□□□ 1.17
VARS-228ENST00000495010 ARHGAP23Q9P227 1491 aa22.36■■□□□ 1.17
VARS-228ENST00000495010 ABCC5O15440 1437 aa22.34■■□□□ 1.17
VARS-228ENST00000495010 CROCC2H7BZ55 1655 aa22.33■■□□□ 1.16
VARS-228ENST00000495010 PTPN23Q9H3S7 1636 aa22.32■■□□□ 1.16
VARS-228ENST00000495010 TMEM2Q9UHN6 1383 aa22.32■■□□□ 1.16
VARS-228ENST00000495010 PIK3C2BO00750 1634 aa22.31■■□□□ 1.16
VARS-228ENST00000495010 DAPK1P53355 1430 aa22.31■■□□□ 1.16
VARS-228ENST00000495010 CHIC2Q9UKJ5 165 aa22.29■■□□□ 1.16
VARS-228ENST00000495010 ANKRD30AQ9BXX3 1397 aa22.28■■□□□ 1.16
VARS-228ENST00000495010 EFCAB6Q5THR3 1501 aa22.27■■□□□ 1.16
VARS-228ENST00000495010 IDI1Q13907 227 aa22.27■■□□□ 1.16
VARS-228ENST00000495010 BCANQ96GW7 911 aa22.26■■□□□ 1.15
VARS-228ENST00000495010 XIRP1Q702N8 1843 aaKnown RBP22.25■■□□□ 1.15
VARS-228ENST00000495010 KCNA6P17658 529 aa22.25■■□□□ 1.15
VARS-228ENST00000495010 PROSER2Q86WR7 435 aaPredicted RBP22.25■■□□□ 1.15
VARS-228ENST00000495010 TMEM94Q12767 1356 aa22.25■■□□□ 1.15
VARS-228ENST00000495010 SLC26A8Q96RN1 970 aa22.24■■□□□ 1.15
VARS-228ENST00000495010 FAM135BQ49AJ0 1406 aa22.23■■□□□ 1.15
VARS-228ENST00000495010 FGD6Q6ZV73 1430 aa22.23■■□□□ 1.15
VARS-228ENST00000495010 KDM5AP29375 1690 aaKnown RBP22.23■■□□□ 1.15
VARS-228ENST00000495010 LMTK2Q8IWU2 1503 aa22.22■■□□□ 1.15
VARS-228ENST00000495010 SLC52A1Q9NWF4 448 aa22.19■■□□□ 1.14
VARS-228ENST00000495010 RGS17Q9UGC6 210 aaPredicted RBP22.19■■□□□ 1.14
VARS-228ENST00000495010 RBM33Q96EV2 1170 aaKnown RBP22.18■■□□□ 1.14
VARS-228ENST00000495010 ADGRB3O60242 1522 aa22.16■■□□□ 1.14
VARS-228ENST00000495010 NOS1P29475 1434 aa22.16■■□□□ 1.14
VARS-228ENST00000495010 TET3O43151 1660 aa22.16■■□□□ 1.14
VARS-228ENST00000495010 HDGFP51858 240 aaKnown RBP22.15■■□□□ 1.14
VARS-228ENST00000495010 MSH6P52701 1360 aa22.14■■□□□ 1.14
VARS-228ENST00000495010 ROBO1Q9Y6N7 1651 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms