RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
VARS-228ENST00000495010 ABCC9O60706 1549 aa32.61■■■□□ 2.81
VARS-228ENST00000495010 CCDC180Q9P1Z9 1646 aa32.3■■■□□ 2.76
VARS-228ENST00000495010 RB1CC1Q8TDY2 1594 aa30.92■■■□□ 2.54
VARS-228ENST00000495010 DNAJC5BQ9UF47 199 aa30.76■■■□□ 2.51
VARS-228ENST00000495010 NACADO15069 1562 aa30.63■■■□□ 2.49
VARS-228ENST00000495010 DCAF8L2P0C7V8 631 aa30.57■■■□□ 2.48
VARS-228ENST00000495010 PABPN1Q86U42 306 aaKnown RBP eCLIP30.34■■■□□ 2.45
VARS-228ENST00000495010 UNC13AQ9UPW8 1703 aa30.13■■■□□ 2.41
VARS-228ENST00000495010 MYO15BQ96JP2 1530 aa30.08■■■□□ 2.41
VARS-228ENST00000495010 BICRAQ9NZM4 1560 aa29.94■■■□□ 2.38
VARS-228ENST00000495010 ZCCHC6Q5VYS8 1495 aaKnown RBP29.67■■■□□ 2.34
VARS-228ENST00000495010 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
VARS-228ENST00000495010 SHROOM4Q9ULL8 1493 aa29.57■■■□□ 2.32
VARS-228ENST00000495010 SCRIBQ14160 1630 aa29.45■■■□□ 2.31
VARS-228ENST00000495010 CC2D2AQ9P2K1 1620 aa29.41■■■□□ 2.3
VARS-228ENST00000495010 CECR2Q9BXF3 1484 aa29.4■■■□□ 2.3
VARS-228ENST00000495010 EIF4G1Q04637 1599 aaKnown RBP29.28■■■□□ 2.28
VARS-228ENST00000495010 DNAJC5Q9H3Z4 198 aa28.49■■■□□ 2.15
VARS-228ENST00000495010 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
VARS-228ENST00000495010 ERCC6Q03468 1493 aa28.22■■■□□ 2.11
VARS-228ENST00000495010 CUX2O14529 1486 aa28.21■■■□□ 2.11
VARS-228ENST00000495010 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
VARS-228ENST00000495010 SMARCA2P51531 1590 aa28.08■■■□□ 2.09
VARS-228ENST00000495010 SMARCA4P51532 1647 aa28.04■■■□□ 2.08
VARS-228ENST00000495010 HMGXB3Q12766 1538 aa28.02■■■□□ 2.08
VARS-228ENST00000495010 BAZ1BQ9UIG0 1483 aaKnown RBP27.9■■■□□ 2.06
VARS-228ENST00000495010 NESP48681 1621 aa27.9■■■□□ 2.06
VARS-228ENST00000495010 BAZ1AQ9NRL2 1556 aaPredicted RBP27.9■■■□□ 2.06
VARS-228ENST00000495010 PEG3Q9GZU2 1588 aa27.74■■■□□ 2.03
VARS-228ENST00000495010 LAMC3Q9Y6N6 1575 aa27.69■■■□□ 2.02
VARS-228ENST00000495010 THOC2Q8NI27 1593 aaKnown RBP27.65■■■□□ 2.02
VARS-228ENST00000495010 MROH2BQ7Z745 1585 aa27.64■■■□□ 2.01
VARS-228ENST00000495010 PDS5BQ9NTI5 1447 aa27.58■■■□□ 2
VARS-228ENST00000495010 KIF21AQ7Z4S6 1674 aa27.53■■■□□ 2
VARS-228ENST00000495010 CADPSQ9ULU8 1353 aa27.43■■□□□ 1.98
VARS-228ENST00000495010 MRC2Q9UBG0 1479 aa27.33■■□□□ 1.97
VARS-228ENST00000495010 WIZO95785 1651 aa27.3■■□□□ 1.96
VARS-228ENST00000495010 WDR62O43379 1518 aa27.23■■□□□ 1.95
VARS-228ENST00000495010 TRIM41Q8WV44 630 aa27.22■■□□□ 1.95
VARS-228ENST00000495010 CEP164Q9UPV0 1460 aa27.18■■□□□ 1.94
VARS-228ENST00000495010 FANCD2Q9BXW9 1451 aa27.12■■□□□ 1.93
VARS-228ENST00000495010 CFTRP13569 1480 aa27.03■■□□□ 1.92
VARS-228ENST00000495010 RSF1Q96T23 1441 aaPredicted RBP26.99■■□□□ 1.91
VARS-228ENST00000495010 TOP2AP11388 1531 aaKnown RBP26.95■■□□□ 1.91
VARS-228ENST00000495010 OSCARQ8IYS5 282 aa26.94■■□□□ 1.9
VARS-228ENST00000495010 URB2Q14146 1524 aaKnown RBP26.87■■□□□ 1.89
VARS-228ENST00000495010 PRDM2Q13029 1718 aa26.72■■□□□ 1.87
VARS-228ENST00000495010 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
VARS-228ENST00000495010 IFT140Q96RY7 1462 aa26.65■■□□□ 1.86
VARS-228ENST00000495010 ZNF608Q9ULD9 1512 aaPredicted RBP26.59■■□□□ 1.85
VARS-228ENST00000495010 TOPBP1Q92547 1522 aa26.55■■□□□ 1.84
VARS-228ENST00000495010 RIMBP3CA6NJZ7 1639 aa26.54■■□□□ 1.84
VARS-228ENST00000495010 RIMBP3BA6NNM3 1639 aa26.54■■□□□ 1.84
VARS-228ENST00000495010 RIMBP3Q9UFD9 1639 aa26.54■■□□□ 1.84
VARS-228ENST00000495010 ABCC8Q09428 1581 aa26.53■■□□□ 1.84
VARS-228ENST00000495010 DNMBPQ6XZF7 1577 aa26.44■■□□□ 1.82
VARS-228ENST00000495010 EIF4G3O43432 1585 aaKnown RBP26.43■■□□□ 1.82
VARS-228ENST00000495010 ARHGEF11O15085 1522 aa26.43■■□□□ 1.82
VARS-228ENST00000495010 AQRO60306 1485 aaKnown RBP eCLIP26.35■■□□□ 1.819e-7■■■■□ 20
VARS-228ENST00000495010 FBLN2P98095 1184 aa26.33■■□□□ 1.81
VARS-228ENST00000495010 CYB5RLQ6IPT4 315 aa26.33■■□□□ 1.81
VARS-228ENST00000495010 TARBP1Q13395 1621 aaKnown RBP26.3■■□□□ 1.8
VARS-228ENST00000495010 CHD1O14646 1710 aa26.28■■□□□ 1.8
VARS-228ENST00000495010 POLA1P09884 1462 aaPredicted RBP26.26■■□□□ 1.79
VARS-228ENST00000495010 SOGA1O94964 1423 aa26.19■■□□□ 1.78
VARS-228ENST00000495010 RAD54L2Q9Y4B4 1467 aa26.18■■□□□ 1.78
VARS-228ENST00000495010 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
VARS-228ENST00000495010 TDRD9Q8NDG6 1382 aaKnown RBP26.16■■□□□ 1.78
VARS-228ENST00000495010 ARAP1Q96P48 1450 aa26.13■■□□□ 1.77
VARS-228ENST00000495010 FGD5Q6ZNL6 1462 aa26.08■■□□□ 1.77
VARS-228ENST00000495010 SNAPC4Q5SXM2 1469 aa26.07■■□□□ 1.76
VARS-228ENST00000495010 CHMP7Q8WUX9 453 aaPredicted RBP26.07■■□□□ 1.76
VARS-228ENST00000495010 WDR97A6NE52 1622 aa26.05■■□□□ 1.76
VARS-228ENST00000495010 MAGI1Q96QZ7 1491 aaPredicted RBP25.99■■□□□ 1.75
VARS-228ENST00000495010 SYNJ1O43426 1573 aa25.99■■□□□ 1.75
VARS-228ENST00000495010 CUX1P39880 1505 aa25.98■■□□□ 1.75
VARS-228ENST00000495010 GRIN2BQ13224 1484 aa25.98■■□□□ 1.75
VARS-228ENST00000495010 CLASP1Q7Z460 1538 aa25.95■■□□□ 1.74
VARS-228ENST00000495010 SYNJ2O15056 1496 aa25.91■■□□□ 1.74
VARS-228ENST00000495010 GAPVD1Q14C86 1478 aa25.85■■□□□ 1.73
VARS-228ENST00000495010 PBRM1Q86U86 1689 aa25.82■■□□□ 1.72
VARS-228ENST00000495010 ABCA10Q8WWZ4 1543 aa25.75■■□□□ 1.71
VARS-228ENST00000495010 SUPT5HO00267 1087 aaKnown RBP25.72■■□□□ 1.71
VARS-228ENST00000495010 ABCA5Q8WWZ7 1642 aa25.71■■□□□ 1.71
VARS-228ENST00000495010 WRNQ14191 1432 aaPredicted RBP eCLIP25.64■■□□□ 1.7
VARS-228ENST00000495010 AEBP2Q6ZN18 517 aaPredicted RBP25.64■■□□□ 1.7
VARS-228ENST00000495010 GRIN2AQ12879 1464 aa25.62■■□□□ 1.69
VARS-228ENST00000495010 ADAMTS12P58397 1594 aa25.55■■□□□ 1.68
VARS-228ENST00000495010 NUP160Q12769 1436 aa25.53■■□□□ 1.68
VARS-228ENST00000495010 ERCC6L2Q5T890 1561 aa25.52■■□□□ 1.68
VARS-228ENST00000495010 FHAD1B1AJZ9 1412 aa25.52■■□□□ 1.68
VARS-228ENST00000495010 CEP170Q5SW79 1584 aa25.52■■□□□ 1.68
VARS-228ENST00000495010 TOP2BQ02880 1626 aa25.51■■□□□ 1.67
VARS-228ENST00000495010 BIVM-ERCC5R4GMW8 1640 aa25.5■■□□□ 1.67
VARS-228ENST00000495010 ERICH3Q5RHP9 1530 aa25.44■■□□□ 1.66
VARS-228ENST00000495010 SHROOM2Q13796 1616 aa25.41■■□□□ 1.66
VARS-228ENST00000495010 PRG4Q92954 1404 aaPredicted RBP25.36■■□□□ 1.65
VARS-228ENST00000495010 JPH4Q96JJ6 628 aa25.33■■□□□ 1.65
VARS-228ENST00000495010 NPM1P06748 294 aaKnown RBP eCLIP25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms