RNA–Protein interactions for RNA: ENST00000472807.1

CHEK2-223, Transcript of checkpoint kinase 2, human

TSL 2

Gene CHEK2, Length 514 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHEK2-223	ENST00000472807	MYO3A	Q8NEV4	1616 aa		14.02	□□□□□ -0.16
CHEK2-223	ENST00000472807	MAST1	Q9Y2H9	1570 aa		14.02	□□□□□ -0.16
CHEK2-223	ENST00000472807	PTPRK	Q15262	1439 aa		14.02	□□□□□ -0.16
CHEK2-223	ENST00000472807	ZNF142	P52746	1687 aa	Predicted RBP	14.01	□□□□□ -0.17
CHEK2-223	ENST00000472807	KDM5D	Q9BY66	1539 aa		14.01	□□□□□ -0.17
CHEK2-223	ENST00000472807	KIF3B	O15066	747 aa		14.01	□□□□□ -0.17
CHEK2-223	ENST00000472807	NCOA1	Q15788	1441 aa		14	□□□□□ -0.17
CHEK2-223	ENST00000472807	PTPRT	O14522	1441 aa		13.99	□□□□□ -0.17
CHEK2-223	ENST00000472807	CAMSAP1	Q5T5Y3	1602 aa		13.99	□□□□□ -0.17
CHEK2-223	ENST00000472807	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.99	□□□□□ -0.17
CHEK2-223	ENST00000472807	CERK	Q8TCT0	537 aa		13.98	□□□□□ -0.17
CHEK2-223	ENST00000472807	WASHC2C	Q9Y4E1	1318 aa		13.97	□□□□□ -0.17
CHEK2-223	ENST00000472807	RNF17	Q9BXT8	1623 aa	Known RBP	13.97	□□□□□ -0.17
CHEK2-223	ENST00000472807	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.97	□□□□□ -0.17
CHEK2-223	ENST00000472807	CROCC2	H7BZ55	1655 aa		13.96	□□□□□ -0.17
CHEK2-223	ENST00000472807	PZP	P20742	1482 aa		13.96	□□□□□ -0.17
CHEK2-223	ENST00000472807	PTPN23	Q9H3S7	1636 aa		13.96	□□□□□ -0.17
CHEK2-223	ENST00000472807	PLA2R1	Q13018	1463 aa		13.95	□□□□□ -0.18
CHEK2-223	ENST00000472807	SHANK2	Q9UPX8	1470 aa		13.95	□□□□□ -0.18
CHEK2-223	ENST00000472807	ZC3H13	Q5T200	1668 aa	Known RBP	13.95	□□□□□ -0.18
CHEK2-223	ENST00000472807	A2ML1	A8K2U0	1454 aa		13.94	□□□□□ -0.18
CHEK2-223	ENST00000472807	TNR	Q92752	1358 aa		13.94	□□□□□ -0.18
CHEK2-223	ENST00000472807	FGD6	Q6ZV73	1430 aa		13.93	□□□□□ -0.18
CHEK2-223	ENST00000472807	DUOX2	Q9NRD8	1548 aa		13.93	□□□□□ -0.18
CHEK2-223	ENST00000472807	ABCC3	O15438	1527 aa		13.91	□□□□□ -0.18
CHEK2-223	ENST00000472807	DNMT1	P26358	1616 aa	Known RBP	13.91	□□□□□ -0.18
CHEK2-223	ENST00000472807	PKD2	Q13563	968 aa		13.91	□□□□□ -0.18
CHEK2-223	ENST00000472807	KIF15	Q9NS87	1388 aa		13.91	□□□□□ -0.18
CHEK2-223	ENST00000472807	TCOF1	Q13428	1488 aa	Known RBP	13.91	□□□□□ -0.18
CHEK2-223	ENST00000472807	NCKAP5L	Q9HCH0	1330 aa		13.9	□□□□□ -0.18
CHEK2-223	ENST00000472807	ABCC5	O15440	1437 aa		13.9	□□□□□ -0.18
CHEK2-223	ENST00000472807	DAPK1	P53355	1430 aa		13.9	□□□□□ -0.18
CHEK2-223	ENST00000472807	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.9	□□□□□ -0.18
CHEK2-223	ENST00000472807	MROH1	Q8NDA8	1641 aa		13.9	□□□□□ -0.19
CHEK2-223	ENST00000472807	ERBIN	Q96RT1	1412 aa		13.9	□□□□□ -0.19
CHEK2-223	ENST00000472807	NLRP1	Q9C000	1473 aa		13.89	□□□□□ -0.19
CHEK2-223	ENST00000472807	LTBP4	Q8N2S1	1624 aa		13.88	□□□□□ -0.19
CHEK2-223	ENST00000472807	CEP152	O94986	1710 aa		13.87	□□□□□ -0.19
CHEK2-223	ENST00000472807	POLR1A	O95602	1720 aa	Predicted RBP	13.87	□□□□□ -0.19
CHEK2-223	ENST00000472807	PRDM15	P57071	1507 aa	Predicted RBP	13.87	□□□□□ -0.19
CHEK2-223	ENST00000472807	RRP7BP	Q9NSQ0	103 aa		13.86	□□□□□ -0.19
CHEK2-223	ENST00000472807	IQSEC2	Q5JU85	1478 aa		13.86	□□□□□ -0.19
CHEK2-223	ENST00000472807	ANKRD30A	Q9BXX3	1397 aa		13.85	□□□□□ -0.19
CHEK2-223	ENST00000472807	SPATA31D1	Q6ZQQ2	1576 aa		13.85	□□□□□ -0.19
CHEK2-223	ENST00000472807	UGGT1	Q9NYU2	1555 aa		13.85	□□□□□ -0.19
CHEK2-223	ENST00000472807	ERVK-7	P63135	1459 aa		13.85	□□□□□ -0.19
CHEK2-223	ENST00000472807	DEPDC5	O75140	1603 aa		13.84	□□□□□ -0.19
CHEK2-223	ENST00000472807	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.83	□□□□□ -0.2
CHEK2-223	ENST00000472807	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.83	□□□□□ -0.2
CHEK2-223	ENST00000472807	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
CHEK2-223	ENST00000472807	CHIC2	Q9UKJ5	165 aa		13.82	□□□□□ -0.2
CHEK2-223	ENST00000472807	NEURL4	Q96JN8	1562 aa		13.82	□□□□□ -0.2
CHEK2-223	ENST00000472807	KANK1	Q14678	1352 aa		13.82	□□□□□ -0.2
CHEK2-223	ENST00000472807	FAM50A	Q14320	339 aa	Known RBP	13.81	□□□□□ -0.2
CHEK2-223	ENST00000472807	ARHGAP31	Q2M1Z3	1444 aa		13.81	□□□□□ -0.2
CHEK2-223	ENST00000472807	ADGRL2	O95490	1459 aa		13.8	□□□□□ -0.2
CHEK2-223	ENST00000472807	CFAP65	Q6ZU64	1925 aa	Known RBP	13.8	□□□□□ -0.2
CHEK2-223	ENST00000472807	ANKLE2	Q86XL3	938 aa		13.8	□□□□□ -0.2
CHEK2-223	ENST00000472807	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
CHEK2-223	ENST00000472807	MED14	O60244	1454 aa		13.77	□□□□□ -0.21
CHEK2-223	ENST00000472807	NPHP4	O75161	1426 aa	Predicted RBP	13.77	□□□□□ -0.21
CHEK2-223	ENST00000472807	LMTK2	Q8IWU2	1503 aa		13.77	□□□□□ -0.21
CHEK2-223	ENST00000472807	UBR1	Q8IWV7	1749 aa		13.77	□□□□□ -0.21
CHEK2-223	ENST00000472807	IQGAP1	P46940	1657 aa		13.76	□□□□□ -0.21
CHEK2-223	ENST00000472807	VWDE	Q8N2E2	1590 aa		13.76	□□□□□ -0.21
CHEK2-223	ENST00000472807	CPS1	P31327	1500 aa		13.75	□□□□□ -0.21
CHEK2-223	ENST00000472807	EFCAB6	Q5THR3	1501 aa		13.74	□□□□□ -0.21
CHEK2-223	ENST00000472807	ANKRD50	Q9ULJ7	1429 aa		13.74	□□□□□ -0.21
CHEK2-223	ENST00000472807	SCAF11	Q99590	1463 aa	Known RBP	13.73	□□□□□ -0.21
CHEK2-223	ENST00000472807	UBAP1L	F5GYI3	381 aa		13.72	□□□□□ -0.21
CHEK2-223	ENST00000472807	SLIT1	O75093	1534 aa		13.72	□□□□□ -0.21
CHEK2-223	ENST00000472807	PIK3C2B	O00750	1634 aa		13.72	□□□□□ -0.21
CHEK2-223	ENST00000472807	KDM5A	P29375	1690 aa	Known RBP	13.7	□□□□□ -0.22
CHEK2-223	ENST00000472807	ARHGAP23	Q9P227	1491 aa		13.7	□□□□□ -0.22
CHEK2-223	ENST00000472807	STAG3	Q9UJ98	1225 aa		13.7	□□□□□ -0.22
CHEK2-223	ENST00000472807	SYNM	O15061	1565 aa		13.7	□□□□□ -0.22
CHEK2-223	ENST00000472807	ROCK1	Q13464	1354 aa		13.7	□□□□□ -0.22
CHEK2-223	ENST00000472807	RPRD2	Q5VT52	1461 aa	Known RBP	13.69	□□□□□ -0.22
CHEK2-223	ENST00000472807	EID1	Q9Y6B2	187 aa		13.69	□□□□□ -0.22
CHEK2-223	ENST00000472807	UNC13B	O14795	1591 aa		13.68	□□□□□ -0.22
CHEK2-223	ENST00000472807	NOS1	P29475	1434 aa		13.68	□□□□□ -0.22
CHEK2-223	ENST00000472807	TET3	O43151	1660 aa		13.68	□□□□□ -0.22
CHEK2-223	ENST00000472807	TMEM2	Q9UHN6	1383 aa		13.68	□□□□□ -0.22
CHEK2-223	ENST00000472807	TXNDC2	Q86VQ3	553 aa		13.67	□□□□□ -0.22
CHEK2-223	ENST00000472807	ADGRB3	O60242	1522 aa		13.67	□□□□□ -0.22
CHEK2-223	ENST00000472807	GCC2	Q8IWJ2	1684 aa		13.66	□□□□□ -0.22
CHEK2-223	ENST00000472807	LTK	P29376	864 aa		13.65	□□□□□ -0.22
CHEK2-223	ENST00000472807	IDI1	Q13907	227 aa		13.65	□□□□□ -0.22
CHEK2-223	ENST00000472807	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.65	□□□□□ -0.22
CHEK2-223	ENST00000472807	SLC52A1	Q9NWF4	448 aa		13.65	□□□□□ -0.22
CHEK2-223	ENST00000472807	STRCP1	A6NGW2	1772 aa		13.65	□□□□□ -0.22
CHEK2-223	ENST00000472807	SCAF1	Q9H7N4	1312 aa	Known RBP	13.64	□□□□□ -0.23
CHEK2-223	ENST00000472807	TOM1	O60784	492 aa		13.64	□□□□□ -0.23
CHEK2-223	ENST00000472807	ITGAE	P38570	1179 aa		13.64	□□□□□ -0.23
CHEK2-223	ENST00000472807	DISP3	Q9P2K9	1392 aa		13.63	□□□□□ -0.23
CHEK2-223	ENST00000472807	IQGAP3	Q86VI3	1631 aa		13.63	□□□□□ -0.23
CHEK2-223	ENST00000472807	PIP4K2B	P78356	416 aa		13.62	□□□□□ -0.23
CHEK2-223	ENST00000472807	LRRC7	Q96NW7	1537 aa		13.62	□□□□□ -0.23
CHEK2-223	ENST00000472807		E9PCH4	1651 aa		13.6	□□□□□ -0.23
CHEK2-223	ENST00000472807	NUP155	O75694	1391 aa		13.58	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 62 ms