RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 PTPN23Q9H3S7 1636 aa21.01■□□□□ 0.95
HMGN1-211ENST00000471260 FGD6Q6ZV73 1430 aa21.01■□□□□ 0.95
HMGN1-211ENST00000471260 SHANK2Q9UPX8 1470 aa21.01■□□□□ 0.95
HMGN1-211ENST00000471260 TCOF1Q13428 1488 aaKnown RBP21■□□□□ 0.95
HMGN1-211ENST00000471260 ABCC5O15440 1437 aa20.99■□□□□ 0.95
HMGN1-211ENST00000471260 CERKQ8TCT0 537 aa20.99■□□□□ 0.95
HMGN1-211ENST00000471260 EIF2AK4Q9P2K8 1649 aaKnown RBP20.99■□□□□ 0.95
HMGN1-211ENST00000471260 PZPP20742 1482 aa20.99■□□□□ 0.95
HMGN1-211ENST00000471260 ZNF142P52746 1687 aaPredicted RBP20.99■□□□□ 0.95
HMGN1-211ENST00000471260 CAMSAP1Q5T5Y3 1602 aa20.98■□□□□ 0.95
HMGN1-211ENST00000471260 MYO3AQ8NEV4 1616 aa20.98■□□□□ 0.95
HMGN1-211ENST00000471260 DUOX2Q9NRD8 1548 aa20.98■□□□□ 0.95
HMGN1-211ENST00000471260 CEP170BQ9Y4F5 1589 aaPredicted RBP20.97■□□□□ 0.95
HMGN1-211ENST00000471260 RNF17Q9BXT8 1623 aaKnown RBP20.97■□□□□ 0.95
HMGN1-211ENST00000471260 PLA2R1Q13018 1463 aa20.97■□□□□ 0.95
HMGN1-211ENST00000471260 PKD2Q13563 968 aa20.96■□□□□ 0.95
HMGN1-211ENST00000471260 DAPK1P53355 1430 aa20.95■□□□□ 0.95
HMGN1-211ENST00000471260 TNRQ92752 1358 aa20.95■□□□□ 0.94
HMGN1-211ENST00000471260 A2ML1A8K2U0 1454 aa20.94■□□□□ 0.94
HMGN1-211ENST00000471260 FBXO31Q5XUX0 539 aaPredicted RBP20.94■□□□□ 0.94
HMGN1-211ENST00000471260 KIF15Q9NS87 1388 aa20.94■□□□□ 0.94
HMGN1-211ENST00000471260 DNMT1P26358 1616 aaKnown RBP20.93■□□□□ 0.94
HMGN1-211ENST00000471260 CROCC2H7BZ55 1655 aa20.93■□□□□ 0.94
HMGN1-211ENST00000471260 ERBINQ96RT1 1412 aa20.93■□□□□ 0.94
HMGN1-211ENST00000471260 ZC3H13Q5T200 1668 aaKnown RBP20.93■□□□□ 0.94
HMGN1-211ENST00000471260 RRP7BPQ9NSQ0 103 aa20.91■□□□□ 0.94
HMGN1-211ENST00000471260 ABCC3O15438 1527 aa20.9■□□□□ 0.94
HMGN1-211ENST00000471260 ANKRD30AQ9BXX3 1397 aa20.9■□□□□ 0.94
HMGN1-211ENST00000471260 NLRP1Q9C000 1473 aa20.89■□□□□ 0.94
HMGN1-211ENST00000471260 NCKAP5LQ9HCH0 1330 aa20.89■□□□□ 0.93
HMGN1-211ENST00000471260 MROH1Q8NDA8 1641 aa20.88■□□□□ 0.93
HMGN1-211ENST00000471260 THEMISQ8N1K5 641 aaPredicted RBP20.86■□□□□ 0.93
HMGN1-211ENST00000471260 PRDM15P57071 1507 aaPredicted RBP20.84■□□□□ 0.93
HMGN1-211ENST00000471260 FAM50AQ14320 339 aaKnown RBP20.84■□□□□ 0.93
HMGN1-211ENST00000471260 CHIC2Q9UKJ5 165 aa20.84■□□□□ 0.93
HMGN1-211ENST00000471260 SPATA31D1Q6ZQQ2 1576 aa20.84■□□□□ 0.93
HMGN1-211ENST00000471260 ARHGAP31Q2M1Z3 1444 aa20.83■□□□□ 0.93
HMGN1-211ENST00000471260 LTBP4Q8N2S1 1624 aa20.82■□□□□ 0.92
HMGN1-211ENST00000471260 ADGRL2O95490 1459 aa20.82■□□□□ 0.92
HMGN1-211ENST00000471260 KANK1Q14678 1352 aa20.82■□□□□ 0.92
HMGN1-211ENST00000471260 UGGT1Q9NYU2 1555 aa20.81■□□□□ 0.92
HMGN1-211ENST00000471260 ERVK-7P63135 1459 aa20.81■□□□□ 0.92
HMGN1-211ENST00000471260 IQSEC2Q5JU85 1478 aa20.81■□□□□ 0.92
HMGN1-211ENST00000471260 DEPDC5O75140 1603 aa20.8■□□□□ 0.92
HMGN1-211ENST00000471260 ANKLE2Q86XL3 938 aa20.8■□□□□ 0.92
HMGN1-211ENST00000471260 CEP152O94986 1710 aa20.79■□□□□ 0.92
HMGN1-211ENST00000471260 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.78■□□□□ 0.92
HMGN1-211ENST00000471260 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.77■□□□□ 0.921e-6■□□□□ 9.8
HMGN1-211ENST00000471260 ZNF335Q9H4Z2 1342 aaPredicted RBP20.76■□□□□ 0.91
HMGN1-211ENST00000471260 LMTK2Q8IWU2 1503 aa20.75■□□□□ 0.91
HMGN1-211ENST00000471260 POLR1AO95602 1720 aaPredicted RBP20.75■□□□□ 0.91
HMGN1-211ENST00000471260 VWDEQ8N2E2 1590 aa20.73■□□□□ 0.91
HMGN1-211ENST00000471260 ANKRD50Q9ULJ7 1429 aa20.73■□□□□ 0.91
HMGN1-211ENST00000471260 MED14O60244 1454 aa20.73■□□□□ 0.91
HMGN1-211ENST00000471260 NEURL4Q96JN8 1562 aa20.72■□□□□ 0.91
HMGN1-211ENST00000471260 CFAP65Q6ZU64 1925 aaKnown RBP20.71■□□□□ 0.91
HMGN1-211ENST00000471260 ROCK1Q13464 1354 aa20.71■□□□□ 0.91
HMGN1-211ENST00000471260 NPHP4O75161 1426 aaPredicted RBP20.69■□□□□ 0.9
HMGN1-211ENST00000471260 UBR1Q8IWV7 1749 aa20.67■□□□□ 0.9
HMGN1-211ENST00000471260 CPS1P31327 1500 aa20.65■□□□□ 0.9
HMGN1-211ENST00000471260 EFCAB6Q5THR3 1501 aa20.64■□□□□ 0.9
HMGN1-211ENST00000471260 RPRD2Q5VT52 1461 aaKnown RBP20.64■□□□□ 0.89
HMGN1-211ENST00000471260 SLIT1O75093 1534 aa20.63■□□□□ 0.89
HMGN1-211ENST00000471260 ARHGAP23Q9P227 1491 aa20.63■□□□□ 0.89
HMGN1-211ENST00000471260 NOS1P29475 1434 aa20.63■□□□□ 0.89
HMGN1-211ENST00000471260 IQGAP1P46940 1657 aa20.62■□□□□ 0.89
HMGN1-211ENST00000471260 IDI1Q13907 227 aa20.62■□□□□ 0.89
HMGN1-211ENST00000471260 SLC52A1Q9NWF4 448 aa20.62■□□□□ 0.89
HMGN1-211ENST00000471260 STAG3Q9UJ98 1225 aa20.62■□□□□ 0.89
HMGN1-211ENST00000471260 EID1Q9Y6B2 187 aa20.62■□□□□ 0.89
HMGN1-211ENST00000471260 SCAF11Q99590 1463 aaKnown RBP20.62■□□□□ 0.89
HMGN1-211ENST00000471260 KDM5AP29375 1690 aaKnown RBP20.61■□□□□ 0.89
HMGN1-211ENST00000471260 TXNDC2Q86VQ3 553 aa20.61■□□□□ 0.89
HMGN1-211ENST00000471260 PPARGC1BQ86YN6 1023 aaKnown RBP20.6■□□□□ 0.89
HMGN1-211ENST00000471260 TMEM2Q9UHN6 1383 aa20.59■□□□□ 0.89
HMGN1-211ENST00000471260 PIK3C2BO00750 1634 aa20.58■□□□□ 0.89
HMGN1-211ENST00000471260 UBAP1LF5GYI3 381 aa20.58■□□□□ 0.89
HMGN1-211ENST00000471260 LTKP29376 864 aa20.58■□□□□ 0.89
HMGN1-211ENST00000471260 UNC13BO14795 1591 aa20.58■□□□□ 0.88
HMGN1-211ENST00000471260 SYNMO15061 1565 aa20.57■□□□□ 0.88
HMGN1-211ENST00000471260 TET3O43151 1660 aa20.57■□□□□ 0.88
HMGN1-211ENST00000471260 ITGAEP38570 1179 aa20.56■□□□□ 0.88
HMGN1-211ENST00000471260 RRBP1Q9P2E9 1410 aaKnown RBP20.55■□□□□ 0.88
HMGN1-211ENST00000471260 TOM1O60784 492 aa20.53■□□□□ 0.88
HMGN1-211ENST00000471260 GCC2Q8IWJ2 1684 aa20.53■□□□□ 0.88
HMGN1-211ENST00000471260 NUP155O75694 1391 aa20.51■□□□□ 0.87
HMGN1-211ENST00000471260 ADGRB3O60242 1522 aa20.51■□□□□ 0.87
HMGN1-211ENST00000471260 IQGAP3Q86VI3 1631 aa20.5■□□□□ 0.87
HMGN1-211ENST00000471260 HDGFP51858 240 aaKnown RBP20.49■□□□□ 0.87
HMGN1-211ENST00000471260 LRRC7Q96NW7 1537 aa20.46■□□□□ 0.87
HMGN1-211ENST00000471260 E9PCH4 1651 aa20.45■□□□□ 0.86
HMGN1-211ENST00000471260 STRCP1A6NGW2 1772 aa20.45■□□□□ 0.86
HMGN1-211ENST00000471260 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.42■□□□□ 0.86
HMGN1-211ENST00000471260 ZFYVE9O95405 1425 aa20.42■□□□□ 0.86
HMGN1-211ENST00000471260 TMEM131LA2VDJ0 1609 aa20.42■□□□□ 0.86
HMGN1-211ENST00000471260 KCNA6P17658 529 aa20.41■□□□□ 0.86
HMGN1-211ENST00000471260 PIP4K2BP78356 416 aa20.4■□□□□ 0.86
HMGN1-211ENST00000471260 NAIPQ13075 1403 aa20.4■□□□□ 0.86
HMGN1-211ENST00000471260 RIMS2Q9UQ26 1411 aa20.39■□□□□ 0.85
HMGN1-211ENST00000471260 PLEKHG1Q9ULL1 1385 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms