RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 NISCHQ9Y2I1 1504 aa33.34■■■□□ 2.93
HMGN1-211ENST00000471260 CCDC180Q9P1Z9 1646 aa29.8■■■□□ 2.36
HMGN1-211ENST00000471260 ABCC9O60706 1549 aa29.48■■■□□ 2.31
HMGN1-211ENST00000471260 RB1CC1Q8TDY2 1594 aa28.24■■■□□ 2.11
HMGN1-211ENST00000471260 NACADO15069 1562 aa28.15■■■□□ 2.1
HMGN1-211ENST00000471260 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
HMGN1-211ENST00000471260 MYO15BQ96JP2 1530 aa27.91■■■□□ 2.06
HMGN1-211ENST00000471260 ZCCHC6Q5VYS8 1495 aaKnown RBP27.69■■■□□ 2.02
HMGN1-211ENST00000471260 DCAF1Q9Y4B6 1507 aa27.62■■■□□ 2.01
HMGN1-211ENST00000471260 UNC13AQ9UPW8 1703 aa27.52■■■□□ 2
HMGN1-211ENST00000471260 PABPN1Q86U42 306 aaKnown RBP eCLIP27.49■■□□□ 1.99
HMGN1-211ENST00000471260 DNAJC5BQ9UF47 199 aa27.42■■□□□ 1.98
HMGN1-211ENST00000471260 BICRAQ9NZM4 1560 aa27.36■■□□□ 1.97
HMGN1-211ENST00000471260 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
HMGN1-211ENST00000471260 SCRIBQ14160 1630 aa27.08■■□□□ 1.93
HMGN1-211ENST00000471260 EIF4G1Q04637 1599 aaKnown RBP26.69■■□□□ 1.86
HMGN1-211ENST00000471260 CC2D2AQ9P2K1 1620 aa26.66■■□□□ 1.86
HMGN1-211ENST00000471260 CECR2Q9BXF3 1484 aa26.57■■□□□ 1.84
HMGN1-211ENST00000471260 NCAPD3P42695 1498 aa25.99■■□□□ 1.75
HMGN1-211ENST00000471260 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
HMGN1-211ENST00000471260 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
HMGN1-211ENST00000471260 BAZ1AQ9NRL2 1556 aaPredicted RBP25.88■■□□□ 1.73
HMGN1-211ENST00000471260 SMARCA2P51531 1590 aa25.87■■□□□ 1.73
HMGN1-211ENST00000471260 HMGXB3Q12766 1538 aa25.8■■□□□ 1.72
HMGN1-211ENST00000471260 PEG3Q9GZU2 1588 aa25.73■■□□□ 1.71
HMGN1-211ENST00000471260 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
HMGN1-211ENST00000471260 MROH2BQ7Z745 1585 aa25.65■■□□□ 1.7
HMGN1-211ENST00000471260 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
HMGN1-211ENST00000471260 CUX2O14529 1486 aa25.39■■□□□ 1.65
HMGN1-211ENST00000471260 NESP48681 1621 aa25.38■■□□□ 1.65
HMGN1-211ENST00000471260 LAMC3Q9Y6N6 1575 aa25.34■■□□□ 1.65
HMGN1-211ENST00000471260 WIZO95785 1651 aa25.33■■□□□ 1.65
HMGN1-211ENST00000471260 RSF1Q96T23 1441 aaPredicted RBP25.25■■□□□ 1.63
HMGN1-211ENST00000471260 PDS5BQ9NTI5 1447 aa25.21■■□□□ 1.63
HMGN1-211ENST00000471260 CADPSQ9ULU8 1353 aa25.2■■□□□ 1.63
HMGN1-211ENST00000471260 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
HMGN1-211ENST00000471260 TOP2AP11388 1531 aaKnown RBP25.08■■□□□ 1.61
HMGN1-211ENST00000471260 DNAJC5Q9H3Z4 198 aa25.07■■□□□ 1.6
HMGN1-211ENST00000471260 KIF21AQ7Z4S6 1674 aa25.06■■□□□ 1.6
HMGN1-211ENST00000471260 CFTRP13569 1480 aa24.96■■□□□ 1.59
HMGN1-211ENST00000471260 MRC2Q9UBG0 1479 aa24.93■■□□□ 1.58
HMGN1-211ENST00000471260 CEP164Q9UPV0 1460 aa24.89■■□□□ 1.57
HMGN1-211ENST00000471260 FANCD2Q9BXW9 1451 aa24.88■■□□□ 1.57
HMGN1-211ENST00000471260 WDR62O43379 1518 aa24.86■■□□□ 1.57
HMGN1-211ENST00000471260 CCDC88BA6NC98 1476 aa24.79■■□□□ 1.56
HMGN1-211ENST00000471260 PRDM2Q13029 1718 aa24.69■■□□□ 1.54
HMGN1-211ENST00000471260 URB2Q14146 1524 aaKnown RBP24.62■■□□□ 1.53
HMGN1-211ENST00000471260 ABCC8Q09428 1581 aa24.49■■□□□ 1.51
HMGN1-211ENST00000471260 TOPBP1Q92547 1522 aa24.43■■□□□ 1.5
HMGN1-211ENST00000471260 IFT140Q96RY7 1462 aa24.4■■□□□ 1.5
HMGN1-211ENST00000471260 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
HMGN1-211ENST00000471260 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
HMGN1-211ENST00000471260 OSCARQ8IYS5 282 aa24.29■■□□□ 1.48
HMGN1-211ENST00000471260 ZNF608Q9ULD9 1512 aaPredicted RBP24.26■■□□□ 1.47
HMGN1-211ENST00000471260 POLA1P09884 1462 aaPredicted RBP24.2■■□□□ 1.47
HMGN1-211ENST00000471260 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
HMGN1-211ENST00000471260 EIF4G3O43432 1585 aaKnown RBP24.15■■□□□ 1.46
HMGN1-211ENST00000471260 SOGA1O94964 1423 aa24.12■■□□□ 1.45
HMGN1-211ENST00000471260 AQRO60306 1485 aaKnown RBP eCLIP24.1■■□□□ 1.451e-15■■■■□ 19.9
HMGN1-211ENST00000471260 CUX1P39880 1505 aa24.08■■□□□ 1.45
HMGN1-211ENST00000471260 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
HMGN1-211ENST00000471260 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
HMGN1-211ENST00000471260 WDR97A6NE52 1622 aa24.04■■□□□ 1.44
HMGN1-211ENST00000471260 TDRD9Q8NDG6 1382 aaKnown RBP24.01■■□□□ 1.43
HMGN1-211ENST00000471260 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
HMGN1-211ENST00000471260 FBLN2P98095 1184 aa23.9■■□□□ 1.42
HMGN1-211ENST00000471260 CHD1O14646 1710 aa23.89■■□□□ 1.41
HMGN1-211ENST00000471260 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
HMGN1-211ENST00000471260 MAGI1Q96QZ7 1491 aaPredicted RBP23.87■■□□□ 1.41
HMGN1-211ENST00000471260 ABCA10Q8WWZ4 1543 aa23.86■■□□□ 1.41
HMGN1-211ENST00000471260 SNAPC4Q5SXM2 1469 aa23.86■■□□□ 1.41
HMGN1-211ENST00000471260 RIMBP3CA6NJZ7 1639 aa23.84■■□□□ 1.41
HMGN1-211ENST00000471260 RIMBP3BA6NNM3 1639 aa23.84■■□□□ 1.41
HMGN1-211ENST00000471260 RIMBP3Q9UFD9 1639 aa23.84■■□□□ 1.41
HMGN1-211ENST00000471260 WRNQ14191 1432 aaPredicted RBP eCLIP23.84■■□□□ 1.41
HMGN1-211ENST00000471260 ARHGEF11O15085 1522 aa23.83■■□□□ 1.41
HMGN1-211ENST00000471260 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
HMGN1-211ENST00000471260 CHMP7Q8WUX9 453 aaPredicted RBP23.82■■□□□ 1.4
HMGN1-211ENST00000471260 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
HMGN1-211ENST00000471260 BIVM-ERCC5R4GMW8 1640 aa23.78■■□□□ 1.4
HMGN1-211ENST00000471260 SYNJ2O15056 1496 aa23.78■■□□□ 1.4
HMGN1-211ENST00000471260 ABCA5Q8WWZ7 1642 aa23.75■■□□□ 1.39
HMGN1-211ENST00000471260 PBRM1Q86U86 1689 aa23.73■■□□□ 1.39
HMGN1-211ENST00000471260 SYNJ1O43426 1573 aa23.73■■□□□ 1.39
HMGN1-211ENST00000471260 CLASP1Q7Z460 1538 aa23.68■■□□□ 1.38
HMGN1-211ENST00000471260 CYB5RLQ6IPT4 315 aa23.65■■□□□ 1.38
HMGN1-211ENST00000471260 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
HMGN1-211ENST00000471260 ERICH3Q5RHP9 1530 aa23.58■■□□□ 1.36
HMGN1-211ENST00000471260 FHAD1B1AJZ9 1412 aa23.56■■□□□ 1.36
HMGN1-211ENST00000471260 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
HMGN1-211ENST00000471260 ADAMTS12P58397 1594 aa23.55■■□□□ 1.36
HMGN1-211ENST00000471260 NUP160Q12769 1436 aa23.49■■□□□ 1.35
HMGN1-211ENST00000471260 CEP170Q5SW79 1584 aa23.42■■□□□ 1.34
HMGN1-211ENST00000471260 KIF27Q86VH2 1401 aa23.38■■□□□ 1.33
HMGN1-211ENST00000471260 IGF1RP08069 1367 aa23.34■■□□□ 1.33
HMGN1-211ENST00000471260 SHROOM2Q13796 1616 aa23.33■■□□□ 1.32
HMGN1-211ENST00000471260 TRHP20396 242 aaPredicted RBP23.3■■□□□ 1.32
HMGN1-211ENST00000471260 JPH4Q96JJ6 628 aa23.28■■□□□ 1.32
HMGN1-211ENST00000471260 ERCC6L2Q5T890 1561 aa23.27■■□□□ 1.32
HMGN1-211ENST00000471260 CUL7Q14999 1698 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms