RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 CAMSAP1Q5T5Y3 1602 aa23.21■■□□□ 1.31
CBX3-203ENST00000409747 KIF3BO15066 747 aa23.21■■□□□ 1.31
CBX3-203ENST00000409747 APLP2Q06481 763 aa23.21■■□□□ 1.31
CBX3-203ENST00000409747 CEP170BQ9Y4F5 1589 aaPredicted RBP23.2■■□□□ 1.3
CBX3-203ENST00000409747 PLA2R1Q13018 1463 aa23.15■■□□□ 1.3
CBX3-203ENST00000409747 PZPP20742 1482 aa23.14■■□□□ 1.3
CBX3-203ENST00000409747 EIF2AK4Q9P2K8 1649 aaKnown RBP23.14■■□□□ 1.29
CBX3-203ENST00000409747 WASHC2CQ9Y4E1 1318 aa23.14■■□□□ 1.29
CBX3-203ENST00000409747 RNF17Q9BXT8 1623 aaKnown RBP23.13■■□□□ 1.29
CBX3-203ENST00000409747 A2ML1A8K2U0 1454 aa23.12■■□□□ 1.29
CBX3-203ENST00000409747 ZC3H13Q5T200 1668 aaKnown RBP23.11■■□□□ 1.29
CBX3-203ENST00000409747 PKD2Q13563 968 aa23.1■■□□□ 1.29
CBX3-203ENST00000409747 PTPN23Q9H3S7 1636 aa23.09■■□□□ 1.29
CBX3-203ENST00000409747 TNRQ92752 1358 aa23.09■■□□□ 1.29
CBX3-203ENST00000409747 TCOF1Q13428 1488 aaKnown RBP23.08■■□□□ 1.29
CBX3-203ENST00000409747 SHANK2Q9UPX8 1470 aa23.08■■□□□ 1.29
CBX3-203ENST00000409747 CROCC2H7BZ55 1655 aa23.08■■□□□ 1.29
CBX3-203ENST00000409747 DNMT1P26358 1616 aaKnown RBP23.08■■□□□ 1.28
CBX3-203ENST00000409747 DUOX2Q9NRD8 1548 aa23.07■■□□□ 1.28
CBX3-203ENST00000409747 NCKAP5LQ9HCH0 1330 aa23.06■■□□□ 1.28
CBX3-203ENST00000409747 LTBP4Q8N2S1 1624 aa23.05■■□□□ 1.28
CBX3-203ENST00000409747 IQSEC2Q5JU85 1478 aa23.04■■□□□ 1.28
CBX3-203ENST00000409747 ABCC3O15438 1527 aa23.04■■□□□ 1.28
CBX3-203ENST00000409747 FGD6Q6ZV73 1430 aa23.03■■□□□ 1.28
CBX3-203ENST00000409747 FBXO31Q5XUX0 539 aaPredicted RBP23.03■■□□□ 1.28
CBX3-203ENST00000409747 NLRP1Q9C000 1473 aa23.03■■□□□ 1.28
CBX3-203ENST00000409747 ABCC5O15440 1437 aa23.02■■□□□ 1.28
CBX3-203ENST00000409747 MROH1Q8NDA8 1641 aa23.01■■□□□ 1.27
CBX3-203ENST00000409747 KIF15Q9NS87 1388 aa23.01■■□□□ 1.27
CBX3-203ENST00000409747 DAPK1P53355 1430 aa23■■□□□ 1.27
CBX3-203ENST00000409747 ERBINQ96RT1 1412 aa23■■□□□ 1.27
CBX3-203ENST00000409747 POLR1AO95602 1720 aaPredicted RBP23■■□□□ 1.27
CBX3-203ENST00000409747 SPATA31D1Q6ZQQ2 1576 aa22.98■■□□□ 1.27
CBX3-203ENST00000409747 CEP152O94986 1710 aa22.97■■□□□ 1.27
CBX3-203ENST00000409747 UGGT1Q9NYU2 1555 aa22.96■■□□□ 1.27
CBX3-203ENST00000409747 PRDM15P57071 1507 aaPredicted RBP22.96■■□□□ 1.27
CBX3-203ENST00000409747 THEMISQ8N1K5 641 aaPredicted RBP22.94■■□□□ 1.26
CBX3-203ENST00000409747 ZNF335Q9H4Z2 1342 aaPredicted RBP22.94■■□□□ 1.26
CBX3-203ENST00000409747 ERVK-7P63135 1459 aa22.94■■□□□ 1.26
CBX3-203ENST00000409747 RRP7BPQ9NSQ0 103 aa22.94■■□□□ 1.26
CBX3-203ENST00000409747 ANKRD30AQ9BXX3 1397 aa22.93■■□□□ 1.26
CBX3-203ENST00000409747 NEURL4Q96JN8 1562 aa22.92■■□□□ 1.26
CBX3-203ENST00000409747 DEPDC5O75140 1603 aa22.92■■□□□ 1.26
CBX3-203ENST00000409747 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.91■■□□□ 1.26
CBX3-203ENST00000409747 ANKLE2Q86XL3 938 aa22.9■■□□□ 1.26
CBX3-203ENST00000409747 ARHGAP31Q2M1Z3 1444 aa22.89■■□□□ 1.25
CBX3-203ENST00000409747 KANK1Q14678 1352 aa22.88■■□□□ 1.25
CBX3-203ENST00000409747 MED14O60244 1454 aa22.86■■□□□ 1.25
CBX3-203ENST00000409747 ADGRL2O95490 1459 aa22.85■■□□□ 1.25
CBX3-203ENST00000409747 CPS1P31327 1500 aa22.84■■□□□ 1.25
CBX3-203ENST00000409747 CHIC2Q9UKJ5 165 aa22.84■■□□□ 1.25
CBX3-203ENST00000409747 NPHP4O75161 1426 aaPredicted RBP22.84■■□□□ 1.25
CBX3-203ENST00000409747 UBR1Q8IWV7 1749 aa22.83■■□□□ 1.24
CBX3-203ENST00000409747 FAM50AQ14320 339 aaKnown RBP22.82■■□□□ 1.24
CBX3-203ENST00000409747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.82■■□□□ 1.241e-10■■■■□ 21.8
CBX3-203ENST00000409747 CFAP65Q6ZU64 1925 aaKnown RBP22.82■■□□□ 1.24
CBX3-203ENST00000409747 LMTK2Q8IWU2 1503 aa22.82■■□□□ 1.24
CBX3-203ENST00000409747 IQGAP1P46940 1657 aa22.82■■□□□ 1.24
CBX3-203ENST00000409747 VWDEQ8N2E2 1590 aa22.8■■□□□ 1.24
CBX3-203ENST00000409747 UBAP1LF5GYI3 381 aa22.78■■□□□ 1.24
CBX3-203ENST00000409747 EFCAB6Q5THR3 1501 aa22.75■■□□□ 1.23
CBX3-203ENST00000409747 SCAF11Q99590 1463 aaKnown RBP22.75■■□□□ 1.23
CBX3-203ENST00000409747 ANKRD50Q9ULJ7 1429 aa22.74■■□□□ 1.23
CBX3-203ENST00000409747 SLIT1O75093 1534 aa22.74■■□□□ 1.23
CBX3-203ENST00000409747 KDM5AP29375 1690 aaKnown RBP22.74■■□□□ 1.23
CBX3-203ENST00000409747 PIK3C2BO00750 1634 aa22.73■■□□□ 1.23
CBX3-203ENST00000409747 ARHGAP23Q9P227 1491 aa22.73■■□□□ 1.23
CBX3-203ENST00000409747 STAG3Q9UJ98 1225 aa22.69■■□□□ 1.22
CBX3-203ENST00000409747 EID1Q9Y6B2 187 aa22.68■■□□□ 1.22
CBX3-203ENST00000409747 SYNMO15061 1565 aa22.68■■□□□ 1.22
CBX3-203ENST00000409747 RPRD2Q5VT52 1461 aaKnown RBP22.68■■□□□ 1.22
CBX3-203ENST00000409747 NOS1P29475 1434 aa22.67■■□□□ 1.22
CBX3-203ENST00000409747 TXNDC2Q86VQ3 553 aa22.67■■□□□ 1.22
CBX3-203ENST00000409747 ROCK1Q13464 1354 aa22.67■■□□□ 1.22
CBX3-203ENST00000409747 TOM1O60784 492 aa22.66■■□□□ 1.22
CBX3-203ENST00000409747 TMEM2Q9UHN6 1383 aa22.66■■□□□ 1.22
CBX3-203ENST00000409747 TET3O43151 1660 aa22.66■■□□□ 1.22
CBX3-203ENST00000409747 DISP3Q9P2K9 1392 aa22.65■■□□□ 1.22
CBX3-203ENST00000409747 UNC13BO14795 1591 aa22.65■■□□□ 1.22
CBX3-203ENST00000409747 ADGRB3O60242 1522 aa22.64■■□□□ 1.21
CBX3-203ENST00000409747 LTKP29376 864 aa22.63■■□□□ 1.21
CBX3-203ENST00000409747 IDI1Q13907 227 aa22.63■■□□□ 1.21
CBX3-203ENST00000409747 STRCP1A6NGW2 1772 aa22.63■■□□□ 1.21
CBX3-203ENST00000409747 SLC52A1Q9NWF4 448 aa22.62■■□□□ 1.21
CBX3-203ENST00000409747 GCC2Q8IWJ2 1684 aa22.62■■□□□ 1.21
CBX3-203ENST00000409747 LRRC7Q96NW7 1537 aa22.61■■□□□ 1.21
CBX3-203ENST00000409747 SCAF1Q9H7N4 1312 aaKnown RBP22.6■■□□□ 1.21
CBX3-203ENST00000409747 PIP4K2BP78356 416 aa22.58■■□□□ 1.21
CBX3-203ENST00000409747 IQGAP3Q86VI3 1631 aa22.56■■□□□ 1.2
CBX3-203ENST00000409747 ITGAEP38570 1179 aa22.52■■□□□ 1.2
CBX3-203ENST00000409747 ALKQ9UM73 1620 aa22.52■■□□□ 1.2
CBX3-203ENST00000409747 E9PCH4 1651 aa22.52■■□□□ 1.2
CBX3-203ENST00000409747 PPARGC1BQ86YN6 1023 aaKnown RBP22.51■■□□□ 1.19
CBX3-203ENST00000409747 HSPA1LP34931 641 aa22.5■■□□□ 1.19
CBX3-203ENST00000409747 TMEM131LA2VDJ0 1609 aa22.49■■□□□ 1.19
CBX3-203ENST00000409747 HDGFP51858 240 aaKnown RBP22.48■■□□□ 1.19
CBX3-203ENST00000409747 MYO5BQ9ULV0 1848 aa22.48■■□□□ 1.19
CBX3-203ENST00000409747 NUP155O75694 1391 aa22.48■■□□□ 1.19
CBX3-203ENST00000409747 ZFYVE9O95405 1425 aa22.47■■□□□ 1.19
CBX3-203ENST00000409747 XIRP1Q702N8 1843 aaKnown RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms