RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 SUB1P53999 127 aaKnown RBP eCLIP10.92□□□□□ -0.666e-13■■■■■ 133.3
CBX3-203ENST00000409747 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.33□□□□□ -0.124e-10■■■■■ 86.3
CBX3-203ENST00000409747 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.35□□□□□ -0.277e-9■■■■■ 72.6
CBX3-203ENST00000409747 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.57■□□□□ 0.087e-6■■■■■ 53.1
CBX3-203ENST00000409747 TRA2AQ13595 282 aaKnown RBP eCLIP14.65□□□□□ -0.062e-11■■■■■ 49.5
CBX3-203ENST00000409747 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.19■□□□□ 0.182e-20■■■■■ 40.5
CBX3-203ENST00000409747 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.69□□□□□ -0.382e-60■■■■□ 26
CBX3-203ENST00000409747 ZC3H11AO75152 810 aaKnown RBP eCLIP16.45■□□□□ 0.224e-6■■■■□ 25.4
CBX3-203ENST00000409747 TIA1P31483 386 aaKnown RBP eCLIP13.45□□□□□ -0.269e-11■■■■□ 23.8
CBX3-203ENST00000409747 EFTUD2Q15029 972 aaKnown RBP eCLIP13.76□□□□□ -0.212e-11■■■■□ 23.8
CBX3-203ENST00000409747 ILF3Q12906 894 aaKnown RBP eCLIP14.74□□□□□ -0.051e-7■■■■□ 21.9
CBX3-203ENST00000409747 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.38□□□□□ -0.279e-18■■■■□ 21.8
CBX3-203ENST00000409747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.82■■□□□ 1.241e-10■■■■□ 21.8
CBX3-203ENST00000409747 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.55□□□□□ -0.082e-7■■■□□ 18.1
CBX3-203ENST00000409747 RBM22Q9NW64 420 aaKnown RBP eCLIP14.7□□□□□ -0.061e-7■■■□□ 18
CBX3-203ENST00000409747 HNRNPCP07910 306 aaKnown RBP eCLIP10.78□□□□□ -0.689e-6■■■□□ 17.7
CBX3-203ENST00000409747 AQRO60306 1485 aaKnown RBP eCLIP26.59■■□□□ 1.852e-9■■■□□ 17.3
CBX3-203ENST00000409747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.24■□□□□ 0.835e-7■■■□□ 16.3
CBX3-203ENST00000409747 NOLC1Q14978 699 aaKnown RBP eCLIP16.14■□□□□ 0.176e-7■■■□□ 15.8
CBX3-203ENST00000409747 SF3B1O75533 1304 aaKnown RBP eCLIP16.27■□□□□ 0.193e-6■■■□□ 15.6
CBX3-203ENST00000409747 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.74□□□□□ -0.051e-9■■■□□ 15.5
CBX3-203ENST00000409747 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.79■□□□□ 0.443e-6■■□□□ 14.4
CBX3-203ENST00000409747 LARP4Q71RC2 724 aaKnown RBP eCLIP13.42□□□□□ -0.265e-13■■□□□ 14.4
CBX3-203ENST00000409747 KHSRPQ92945 711 aaKnown RBP eCLIP16.54■□□□□ 0.242e-6■■□□□ 13.8
CBX3-203ENST00000409747 GPKOWQ92917 476 aaPredicted RBP eCLIP16.98■□□□□ 0.318e-6■■□□□ 13.6
CBX3-203ENST00000409747 TIAL1Q01085 375 aaKnown RBP eCLIP13.95□□□□□ -0.183e-11■■□□□ 13.3
CBX3-203ENST00000409747 SND1Q7KZF4 910 aaKnown RBP eCLIP15.2■□□□□ 0.023e-6■■□□□ 13
CBX3-203ENST00000409747 ZNF622Q969S3 477 aaKnown RBP eCLIP19.47■□□□□ 0.712e-21■■□□□ 12.9
CBX3-203ENST00000409747 DDX3XO00571 662 aaKnown RBP eCLIP14.86□□□□□ -0.034e-23■■□□□ 12.3
CBX3-203ENST00000409747 SRSF1Q07955 248 aaKnown RBP eCLIP14.17□□□□□ -0.144e-9■■□□□ 11.7
CBX3-203ENST00000409747 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.24■■□□□ 1.472e-7■■□□□ 11.6
CBX3-203ENST00000409747 HNRNPMP52272 730 aaKnown RBP eCLIP23.56■■□□□ 1.369e-8■□□□□ 11.2
CBX3-203ENST00000409747 PABPC4Q13310 644 aaKnown RBP eCLIP17.98■□□□□ 0.475e-6■□□□□ 10.7
CBX3-203ENST00000409747 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.89□□□□□ -0.195e-7■□□□□ 10.5
CBX3-203ENST00000409747 CSTF2P33240 577 aaKnown RBP eCLIP14.61□□□□□ -0.071e-6■□□□□ 10.5
CBX3-203ENST00000409747 TARDBPQ13148 414 aaKnown RBP eCLIP14.97□□□□□ -0.013e-12■□□□□ 10.3
CBX3-203ENST00000409747 UPF1Q92900 1129 aaKnown RBP eCLIP21.51■■□□□ 1.031e-20■□□□□ 9.9
CBX3-203ENST00000409747 PUM1Q14671 1186 aaKnown RBP eCLIP15.74■□□□□ 0.116e-15■□□□□ 9.6
CBX3-203ENST00000409747 PPIGQ13427 754 aaKnown RBP eCLIP17.25■□□□□ 0.356e-10■□□□□ 9.5
CBX3-203ENST00000409747 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.54■□□□□ 0.083e-9■□□□□ 9.1
CBX3-203ENST00000409747 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.66□□□□□ -0.222e-8■□□□□ 8.9
CBX3-203ENST00000409747 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.18■□□□□ 0.024e-9■□□□□ 8.8
CBX3-203ENST00000409747 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.84■□□□□ 0.292e-6■□□□□ 8.7
CBX3-203ENST00000409747 SF3B4Q15427 424 aaKnown RBP eCLIP13.53□□□□□ -0.244e-17■□□□□ 8.6
CBX3-203ENST00000409747 NKRFO15226 690 aaKnown RBP eCLIP17.23■□□□□ 0.352e-11■□□□□ 8.6
CBX3-203ENST00000409747 RPS3P23396 243 aaKnown RBP eCLIP14.18□□□□□ -0.145e-7■□□□□ 8.4
CBX3-203ENST00000409747 RBM15Q96T37 977 aaKnown RBP eCLIP14.8□□□□□ -0.042e-7■□□□□ 8.2
CBX3-203ENST00000409747 FXR2P51116 673 aaKnown RBP eCLIP16.31■□□□□ 0.24e-11■□□□□ 8.2
Retrieved 48 of 48 RNA–protein pairs in 9.1 ms