RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 POLR1AO95602 1720 aaPredicted RBP26.06■■□□□ 1.76
CUX2-202ENST00000397643 PZPP20742 1482 aa26.05■■□□□ 1.76
CUX2-202ENST00000397643 KDM5DQ9BY66 1539 aa26.05■■□□□ 1.76
CUX2-202ENST00000397643 FAM135AQ9P2D6 1515 aa26.05■■□□□ 1.76
CUX2-202ENST00000397643 CCDC141Q6ZP82 1450 aa26.04■■□□□ 1.76
CUX2-202ENST00000397643 TNRQ92752 1358 aa26.04■■□□□ 1.76
CUX2-202ENST00000397643 FBXO31Q5XUX0 539 aaPredicted RBP26.03■■□□□ 1.76
CUX2-202ENST00000397643 CAMSAP2Q08AD1 1489 aa26.02■■□□□ 1.76
CUX2-202ENST00000397643 KIF3BO15066 747 aa26■■□□□ 1.75
CUX2-202ENST00000397643 CPS1P31327 1500 aa25.99■■□□□ 1.75
CUX2-202ENST00000397643 NCOA2Q15596 1464 aa25.99■■□□□ 1.75
CUX2-202ENST00000397643 SHANK2Q9UPX8 1470 aa25.98■■□□□ 1.75
CUX2-202ENST00000397643 VWDEQ8N2E2 1590 aa25.96■■□□□ 1.75
CUX2-202ENST00000397643 ARHGEF5Q12774 1597 aa25.95■■□□□ 1.74
CUX2-202ENST00000397643 NLRP1Q9C000 1473 aa25.93■■□□□ 1.74
CUX2-202ENST00000397643 MIA2Q96PC5 1412 aa25.93■■□□□ 1.74
CUX2-202ENST00000397643 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.93■■□□□ 1.74
CUX2-202ENST00000397643 WASHC2CQ9Y4E1 1318 aa25.92■■□□□ 1.74
CUX2-202ENST00000397643 MED14O60244 1454 aa25.91■■□□□ 1.74
CUX2-202ENST00000397643 HSPA1LP34931 641 aa25.91■■□□□ 1.74
CUX2-202ENST00000397643 RSPH4AQ5TD94 716 aa25.91■■□□□ 1.74
CUX2-202ENST00000397643 DEPDC5O75140 1603 aa25.91■■□□□ 1.74
CUX2-202ENST00000397643 ALKQ9UM73 1620 aa25.91■■□□□ 1.74
CUX2-202ENST00000397643 MED1Q15648 1581 aaPredicted RBP25.9■■□□□ 1.74
CUX2-202ENST00000397643 UGGT1Q9NYU2 1555 aa25.9■■□□□ 1.74
CUX2-202ENST00000397643 RNF17Q9BXT8 1623 aaKnown RBP25.88■■□□□ 1.73
CUX2-202ENST00000397643 PIP4K2BP78356 416 aa25.87■■□□□ 1.73
CUX2-202ENST00000397643 ANKLE2Q86XL3 938 aa25.87■■□□□ 1.73
CUX2-202ENST00000397643 NPHP4O75161 1426 aaPredicted RBP25.87■■□□□ 1.73
CUX2-202ENST00000397643 TOM1O60784 492 aa25.86■■□□□ 1.73
CUX2-202ENST00000397643 THEMISQ8N1K5 641 aaPredicted RBP25.86■■□□□ 1.73
CUX2-202ENST00000397643 ABCC3O15438 1527 aa25.86■■□□□ 1.73
CUX2-202ENST00000397643 SCAF1Q9H7N4 1312 aaKnown RBP25.85■■□□□ 1.73
CUX2-202ENST00000397643 IQGAP1P46940 1657 aa25.83■■□□□ 1.73
CUX2-202ENST00000397643 MAST1Q9Y2H9 1570 aa25.83■■□□□ 1.73
CUX2-202ENST00000397643 ZC3H13Q5T200 1668 aaKnown RBP25.83■■□□□ 1.73
CUX2-202ENST00000397643 MROH1Q8NDA8 1641 aa25.81■■□□□ 1.72
CUX2-202ENST00000397643 STRCP1A6NGW2 1772 aa25.81■■□□□ 1.72
CUX2-202ENST00000397643 EIF2AK4Q9P2K8 1649 aaKnown RBP25.79■■□□□ 1.72
CUX2-202ENST00000397643 ERVK-7P63135 1459 aa25.79■■□□□ 1.72
CUX2-202ENST00000397643 LRRC9Q6ZRR7 1453 aa25.79■■□□□ 1.72
CUX2-202ENST00000397643 TSPY4P0CV99 314 aa25.78■■□□□ 1.72
CUX2-202ENST00000397643 TSPY10P0CW01 314 aa25.78■■□□□ 1.72
CUX2-202ENST00000397643 LRRC7Q96NW7 1537 aa25.75■■□□□ 1.71
CUX2-202ENST00000397643 SYNMO15061 1565 aa25.74■■□□□ 1.71
CUX2-202ENST00000397643 UBR1Q8IWV7 1749 aa25.72■■□□□ 1.71
CUX2-202ENST00000397643 VPS8Q8N3P4 1428 aa25.71■■□□□ 1.71
CUX2-202ENST00000397643 CEP152O94986 1710 aa25.71■■□□□ 1.71
CUX2-202ENST00000397643 SCAF11Q99590 1463 aaKnown RBP25.66■■□□□ 1.7
CUX2-202ENST00000397643 ARHGAP23Q9P227 1491 aa25.66■■□□□ 1.7
CUX2-202ENST00000397643 MYOM3Q5VTT5 1437 aa25.66■■□□□ 1.7
CUX2-202ENST00000397643 PRDM15P57071 1507 aaPredicted RBP25.65■■□□□ 1.7
CUX2-202ENST00000397643 DUOX2Q9NRD8 1548 aa25.65■■□□□ 1.7
CUX2-202ENST00000397643 KANK4Q5T7N3 995 aaPredicted RBP25.65■■□□□ 1.7
CUX2-202ENST00000397643 SLIT1O75093 1534 aa25.64■■□□□ 1.7
CUX2-202ENST00000397643 MAP3K1Q13233 1512 aa25.64■■□□□ 1.7
CUX2-202ENST00000397643 CFAP65Q6ZU64 1925 aaKnown RBP25.64■■□□□ 1.69
CUX2-202ENST00000397643 ARHGAP31Q2M1Z3 1444 aa25.62■■□□□ 1.69
CUX2-202ENST00000397643 LTKP29376 864 aa25.61■■□□□ 1.69
CUX2-202ENST00000397643 XIRP1Q702N8 1843 aaKnown RBP25.59■■□□□ 1.69
CUX2-202ENST00000397643 PHF23Q9BUL5 403 aaPredicted RBP25.58■■□□□ 1.69
CUX2-202ENST00000397643 CROCC2H7BZ55 1655 aa25.58■■□□□ 1.68
CUX2-202ENST00000397643 KIF15Q9NS87 1388 aa25.57■■□□□ 1.68
CUX2-202ENST00000397643 ERBINQ96RT1 1412 aa25.56■■□□□ 1.68
CUX2-202ENST00000397643 ABCC5O15440 1437 aa25.55■■□□□ 1.68
CUX2-202ENST00000397643 SENP3Q9H4L4 574 aaPredicted RBP25.55■■□□□ 1.68
CUX2-202ENST00000397643 PIK3C2BO00750 1634 aa25.55■■□□□ 1.68
CUX2-202ENST00000397643 TXNDC2Q86VQ3 553 aa25.54■■□□□ 1.68
CUX2-202ENST00000397643 TMEM2Q9UHN6 1383 aa25.5■■□□□ 1.67
CUX2-202ENST00000397643 LOC105371045A0A1W2PR82 267 aa25.49■■□□□ 1.67
CUX2-202ENST00000397643 PTPN23Q9H3S7 1636 aa25.48■■□□□ 1.67
CUX2-202ENST00000397643 RGS17Q9UGC6 210 aaPredicted RBP25.48■■□□□ 1.67
CUX2-202ENST00000397643 KDM5AP29375 1690 aaKnown RBP25.48■■□□□ 1.67
CUX2-202ENST00000397643 RRP7BPQ9NSQ0 103 aa25.47■■□□□ 1.67
CUX2-202ENST00000397643 LMTK2Q8IWU2 1503 aa25.47■■□□□ 1.67
CUX2-202ENST00000397643 DAPK1P53355 1430 aa25.46■■□□□ 1.67
CUX2-202ENST00000397643 EID1Q9Y6B2 187 aa25.45■■□□□ 1.66
CUX2-202ENST00000397643 EFCAB6Q5THR3 1501 aa25.45■■□□□ 1.66
CUX2-202ENST00000397643 FAM135BQ49AJ0 1406 aa25.44■■□□□ 1.66
CUX2-202ENST00000397643 TET3O43151 1660 aa25.42■■□□□ 1.66
CUX2-202ENST00000397643 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.42■■□□□ 1.66
CUX2-202ENST00000397643 TMEM94Q12767 1356 aa25.42■■□□□ 1.66
CUX2-202ENST00000397643 IDI1Q13907 227 aa25.4■■□□□ 1.66
CUX2-202ENST00000397643 KANK1Q14678 1352 aa25.4■■□□□ 1.66
CUX2-202ENST00000397643 FGD6Q6ZV73 1430 aa25.39■■□□□ 1.66
CUX2-202ENST00000397643 NOS1P29475 1434 aa25.38■■□□□ 1.65
CUX2-202ENST00000397643 NWD1Q149M9 1564 aa25.37■■□□□ 1.65
CUX2-202ENST00000397643 ADGRB3O60242 1522 aa25.37■■□□□ 1.65
CUX2-202ENST00000397643 KCNA6P17658 529 aa25.36■■□□□ 1.65
CUX2-202ENST00000397643 STAG3Q9UJ98 1225 aa25.36■■□□□ 1.65
CUX2-202ENST00000397643 ROBO1Q9Y6N7 1651 aa25.36■■□□□ 1.65
CUX2-202ENST00000397643 ANKRD30AQ9BXX3 1397 aa25.33■■□□□ 1.65
CUX2-202ENST00000397643 SLC26A8Q96RN1 970 aa25.33■■□□□ 1.65
CUX2-202ENST00000397643 NKTRP30414 1462 aaKnown RBP25.33■■□□□ 1.65
CUX2-202ENST00000397643 RBM33Q96EV2 1170 aaKnown RBP25.3■■□□□ 1.64
CUX2-202ENST00000397643 CHIC2Q9UKJ5 165 aa25.3■■□□□ 1.64
CUX2-202ENST00000397643 ADGRL2O95490 1459 aa25.29■■□□□ 1.64
CUX2-202ENST00000397643 POTEAQ6S8J7 498 aa25.28■■□□□ 1.64
CUX2-202ENST00000397643 PROSER2Q86WR7 435 aaPredicted RBP25.27■■□□□ 1.64
CUX2-202ENST00000397643 ZFYVE9O95405 1425 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms