RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 NCOA2Q15596 1464 aa24.88■■□□□ 1.57
CHMP3-202ENST00000393773 PPP6R1Q9UPN7 881 aa24.87■■□□□ 1.57
CHMP3-202ENST00000393773 DHX29Q7Z478 1369 aaKnown RBP24.87■■□□□ 1.57
CHMP3-202ENST00000393773 ARHGEF5Q12774 1597 aa24.86■■□□□ 1.57
CHMP3-202ENST00000393773 PZPP20742 1482 aa24.86■■□□□ 1.57
CHMP3-202ENST00000393773 PKD2Q13563 968 aa24.86■■□□□ 1.57
CHMP3-202ENST00000393773 RNF17Q9BXT8 1623 aaKnown RBP24.82■■□□□ 1.56
CHMP3-202ENST00000393773 ZC3H13Q5T200 1668 aaKnown RBP24.79■■□□□ 1.56
CHMP3-202ENST00000393773 TNRQ92752 1358 aa24.79■■□□□ 1.56
CHMP3-202ENST00000393773 MAST1Q9Y2H9 1570 aa24.77■■□□□ 1.56
CHMP3-202ENST00000393773 SOCS7O14512 581 aa24.76■■□□□ 1.55
CHMP3-202ENST00000393773 DEPDC5O75140 1603 aa24.75■■□□□ 1.55
CHMP3-202ENST00000393773 EIF2AK4Q9P2K8 1649 aaKnown RBP24.75■■□□□ 1.55
CHMP3-202ENST00000393773 CPS1P31327 1500 aa24.75■■□□□ 1.55
CHMP3-202ENST00000393773 VWDEQ8N2E2 1590 aa24.74■■□□□ 1.55
CHMP3-202ENST00000393773 KIF3BO15066 747 aa24.73■■□□□ 1.55
CHMP3-202ENST00000393773 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
CHMP3-202ENST00000393773 NLRP1Q9C000 1473 aa24.72■■□□□ 1.55
CHMP3-202ENST00000393773 UBAP1LF5GYI3 381 aa24.72■■□□□ 1.55
CHMP3-202ENST00000393773 FBXO31Q5XUX0 539 aaPredicted RBP24.71■■□□□ 1.55
CHMP3-202ENST00000393773 IQGAP1P46940 1657 aa24.71■■□□□ 1.55
CHMP3-202ENST00000393773 UGGT1Q9NYU2 1555 aa24.71■■□□□ 1.55
CHMP3-202ENST00000393773 ABCC3O15438 1527 aa24.71■■□□□ 1.55
CHMP3-202ENST00000393773 CEP152O94986 1710 aa24.7■■□□□ 1.54
CHMP3-202ENST00000393773 LRRC9Q6ZRR7 1453 aa24.7■■□□□ 1.54
CHMP3-202ENST00000393773 SHANK2Q9UPX8 1470 aa24.69■■□□□ 1.54
CHMP3-202ENST00000393773 MED14O60244 1454 aa24.67■■□□□ 1.54
CHMP3-202ENST00000393773 RSPH4AQ5TD94 716 aa24.67■■□□□ 1.54
CHMP3-202ENST00000393773 VPS8Q8N3P4 1428 aa24.67■■□□□ 1.54
CHMP3-202ENST00000393773 MIA2Q96PC5 1412 aa24.67■■□□□ 1.54
CHMP3-202ENST00000393773 STRCP1A6NGW2 1772 aa24.67■■□□□ 1.54
CHMP3-202ENST00000393773 ALKQ9UM73 1620 aa24.66■■□□□ 1.54
CHMP3-202ENST00000393773 CROCC2H7BZ55 1655 aa24.65■■□□□ 1.54
CHMP3-202ENST00000393773 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.65■■□□□ 1.54
CHMP3-202ENST00000393773 WASHC2CQ9Y4E1 1318 aa24.64■■□□□ 1.54
CHMP3-202ENST00000393773 MED1Q15648 1581 aaPredicted RBP24.63■■□□□ 1.53
CHMP3-202ENST00000393773 UBR1Q8IWV7 1749 aa24.63■■□□□ 1.53
CHMP3-202ENST00000393773 SYNMO15061 1565 aa24.63■■□□□ 1.53
CHMP3-202ENST00000393773 ERVK-7P63135 1459 aa24.62■■□□□ 1.53
CHMP3-202ENST00000393773 NPHP4O75161 1426 aaPredicted RBP24.61■■□□□ 1.53
CHMP3-202ENST00000393773 MAP3K1Q13233 1512 aa24.61■■□□□ 1.53
CHMP3-202ENST00000393773 CFAP65Q6ZU64 1925 aaKnown RBP24.59■■□□□ 1.53
CHMP3-202ENST00000393773 PRDM15P57071 1507 aaPredicted RBP24.57■■□□□ 1.52
CHMP3-202ENST00000393773 MYOM3Q5VTT5 1437 aa24.57■■□□□ 1.52
CHMP3-202ENST00000393773 TSPY4P0CV99 314 aa24.56■■□□□ 1.52
CHMP3-202ENST00000393773 TSPY10P0CW01 314 aa24.56■■□□□ 1.52
CHMP3-202ENST00000393773 ANKLE2Q86XL3 938 aa24.55■■□□□ 1.52
CHMP3-202ENST00000393773 DUOX2Q9NRD8 1548 aa24.55■■□□□ 1.52
CHMP3-202ENST00000393773 THEMISQ8N1K5 641 aaPredicted RBP24.54■■□□□ 1.52
CHMP3-202ENST00000393773 HSPA1LP34931 641 aa24.51■■□□□ 1.51
CHMP3-202ENST00000393773 XIRP1Q702N8 1843 aaKnown RBP24.5■■□□□ 1.51
CHMP3-202ENST00000393773 LRRC7Q96NW7 1537 aa24.5■■□□□ 1.51
CHMP3-202ENST00000393773 TOM1O60784 492 aa24.49■■□□□ 1.51
CHMP3-202ENST00000393773 SCAF1Q9H7N4 1312 aaKnown RBP24.49■■□□□ 1.51
CHMP3-202ENST00000393773 PIP4K2BP78356 416 aa24.48■■□□□ 1.51
CHMP3-202ENST00000393773 PTPN23Q9H3S7 1636 aa24.48■■□□□ 1.51
CHMP3-202ENST00000393773 SLIT1O75093 1534 aa24.47■■□□□ 1.51
CHMP3-202ENST00000393773 ARHGAP23Q9P227 1491 aa24.47■■□□□ 1.51
CHMP3-202ENST00000393773 KANK4Q5T7N3 995 aaPredicted RBP24.47■■□□□ 1.51
CHMP3-202ENST00000393773 PIK3C2BO00750 1634 aa24.46■■□□□ 1.51
CHMP3-202ENST00000393773 SCAF11Q99590 1463 aaKnown RBP24.45■■□□□ 1.51
CHMP3-202ENST00000393773 ERBINQ96RT1 1412 aa24.45■■□□□ 1.51
CHMP3-202ENST00000393773 ARHGAP31Q2M1Z3 1444 aa24.44■■□□□ 1.5
CHMP3-202ENST00000393773 KDM5AP29375 1690 aaKnown RBP24.43■■□□□ 1.5
CHMP3-202ENST00000393773 KIF15Q9NS87 1388 aa24.42■■□□□ 1.5
CHMP3-202ENST00000393773 ABCC5O15440 1437 aa24.4■■□□□ 1.5
CHMP3-202ENST00000393773 DAPK1P53355 1430 aa24.36■■□□□ 1.49
CHMP3-202ENST00000393773 LOC105371045A0A1W2PR82 267 aa24.36■■□□□ 1.49
CHMP3-202ENST00000393773 LMTK2Q8IWU2 1503 aa24.35■■□□□ 1.49
CHMP3-202ENST00000393773 EFCAB6Q5THR3 1501 aa24.32■■□□□ 1.48
CHMP3-202ENST00000393773 FGD6Q6ZV73 1430 aa24.32■■□□□ 1.48
CHMP3-202ENST00000393773 LTKP29376 864 aa24.31■■□□□ 1.48
CHMP3-202ENST00000393773 ADGRB3O60242 1522 aa24.28■■□□□ 1.48
CHMP3-202ENST00000393773 TMEM2Q9UHN6 1383 aa24.27■■□□□ 1.48
CHMP3-202ENST00000393773 RRP7BPQ9NSQ0 103 aa24.26■■□□□ 1.47
CHMP3-202ENST00000393773 TET3O43151 1660 aa24.26■■□□□ 1.47
CHMP3-202ENST00000393773 NWD1Q149M9 1564 aa24.25■■□□□ 1.47
CHMP3-202ENST00000393773 MYO5BQ9ULV0 1848 aa24.25■■□□□ 1.47
CHMP3-202ENST00000393773 TXNDC2Q86VQ3 553 aa24.24■■□□□ 1.47
CHMP3-202ENST00000393773 KANK1Q14678 1352 aa24.24■■□□□ 1.47
CHMP3-202ENST00000393773 ADGRL2O95490 1459 aa24.23■■□□□ 1.47
CHMP3-202ENST00000393773 NOS1P29475 1434 aa24.22■■□□□ 1.47
CHMP3-202ENST00000393773 ROBO1Q9Y6N7 1651 aa24.21■■□□□ 1.47
CHMP3-202ENST00000393773 ANKRD30AQ9BXX3 1397 aa24.2■■□□□ 1.46
CHMP3-202ENST00000393773 PHF23Q9BUL5 403 aaPredicted RBP24.2■■□□□ 1.46
CHMP3-202ENST00000393773 GCC2Q8IWJ2 1684 aa24.2■■□□□ 1.46
CHMP3-202ENST00000393773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.19■■□□□ 1.468e-8■■■□□ 17.3
CHMP3-202ENST00000393773 SENP3Q9H4L4 574 aaPredicted RBP24.19■■□□□ 1.46
CHMP3-202ENST00000393773 EID1Q9Y6B2 187 aa24.19■■□□□ 1.46
CHMP3-202ENST00000393773 NKTRP30414 1462 aaKnown RBP24.17■■□□□ 1.46
CHMP3-202ENST00000393773 IDI1Q13907 227 aa24.14■■□□□ 1.45
CHMP3-202ENST00000393773 FAM135BQ49AJ0 1406 aa24.14■■□□□ 1.45
CHMP3-202ENST00000393773 TMEM94Q12767 1356 aa24.14■■□□□ 1.45
CHMP3-202ENST00000393773 RPRD2Q5VT52 1461 aaKnown RBP24.13■■□□□ 1.45
CHMP3-202ENST00000393773 CHD2O14647 1828 aaKnown RBP24.13■■□□□ 1.45
CHMP3-202ENST00000393773 UNC13BO14795 1591 aa24.12■■□□□ 1.45
CHMP3-202ENST00000393773 CHIC2Q9UKJ5 165 aa24.12■■□□□ 1.45
CHMP3-202ENST00000393773 TMEM131LA2VDJ0 1609 aa24.11■■□□□ 1.45
CHMP3-202ENST00000393773 APLP2Q06481 763 aa24.1■■□□□ 1.45
CHMP3-202ENST00000393773 STAG3Q9UJ98 1225 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms