RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 UBAP1LF5GYI3 381 aa19.44■□□□□ 0.7
LSM2-208ENST00000375661 ZNF644Q9H582 1327 aaPredicted RBP19.44■□□□□ 0.7
LSM2-208ENST00000375661 CCDC141Q6ZP82 1450 aa19.42■□□□□ 0.7
LSM2-208ENST00000375661 KDM5DQ9BY66 1539 aa19.42■□□□□ 0.7
LSM2-208ENST00000375661 RSPH4AQ5TD94 716 aa19.42■□□□□ 0.7
LSM2-208ENST00000375661 PZPP20742 1482 aa19.41■□□□□ 0.7
LSM2-208ENST00000375661 CPS1P31327 1500 aa19.41■□□□□ 0.7
LSM2-208ENST00000375661 NEURL4Q96JN8 1562 aa19.4■□□□□ 0.7
LSM2-208ENST00000375661 TNRQ92752 1358 aa19.39■□□□□ 0.69
LSM2-208ENST00000375661 CAMSAP2Q08AD1 1489 aa19.39■□□□□ 0.69
LSM2-208ENST00000375661 ARHGEF5Q12774 1597 aa19.38■□□□□ 0.69
LSM2-208ENST00000375661 KIF3BO15066 747 aa19.37■□□□□ 0.69
LSM2-208ENST00000375661 NCOA2Q15596 1464 aa19.36■□□□□ 0.69
LSM2-208ENST00000375661 NLRP1Q9C000 1473 aa19.35■□□□□ 0.69
LSM2-208ENST00000375661 DEPDC5O75140 1603 aa19.35■□□□□ 0.69
LSM2-208ENST00000375661 SHANK2Q9UPX8 1470 aa19.34■□□□□ 0.69
LSM2-208ENST00000375661 WASHC2CQ9Y4E1 1318 aa19.33■□□□□ 0.69
LSM2-208ENST00000375661 ZC3H13Q5T200 1668 aaKnown RBP19.33■□□□□ 0.68
LSM2-208ENST00000375661 FBXO31Q5XUX0 539 aaPredicted RBP19.32■□□□□ 0.68
LSM2-208ENST00000375661 MIA2Q96PC5 1412 aa19.32■□□□□ 0.68
LSM2-208ENST00000375661 RNF17Q9BXT8 1623 aaKnown RBP19.32■□□□□ 0.68
LSM2-208ENST00000375661 UGGT1Q9NYU2 1555 aa19.32■□□□□ 0.68
LSM2-208ENST00000375661 MED14O60244 1454 aa19.31■□□□□ 0.68
LSM2-208ENST00000375661 TOM1O60784 492 aa19.31■□□□□ 0.68
LSM2-208ENST00000375661 ANKLE2Q86XL3 938 aa19.31■□□□□ 0.68
LSM2-208ENST00000375661 THEMISQ8N1K5 641 aaPredicted RBP19.31■□□□□ 0.68
LSM2-208ENST00000375661 VWDEQ8N2E2 1590 aa19.3■□□□□ 0.68
LSM2-208ENST00000375661 EIF2AK4Q9P2K8 1649 aaKnown RBP19.29■□□□□ 0.68
LSM2-208ENST00000375661 MAST1Q9Y2H9 1570 aa19.29■□□□□ 0.68
LSM2-208ENST00000375661 TSPY4P0CV99 314 aa19.29■□□□□ 0.68
LSM2-208ENST00000375661 TSPY10P0CW01 314 aa19.29■□□□□ 0.68
LSM2-208ENST00000375661 IQGAP1P46940 1657 aa19.29■□□□□ 0.68
LSM2-208ENST00000375661 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.28■□□□□ 0.682e-10■■□□□ 14.3
LSM2-208ENST00000375661 NPHP4O75161 1426 aaPredicted RBP19.26■□□□□ 0.67
LSM2-208ENST00000375661 MED1Q15648 1581 aaPredicted RBP19.26■□□□□ 0.67
LSM2-208ENST00000375661 HSPA1LP34931 641 aa19.24■□□□□ 0.67
LSM2-208ENST00000375661 ABCC3O15438 1527 aa19.24■□□□□ 0.67
LSM2-208ENST00000375661 SYNMO15061 1565 aa19.23■□□□□ 0.67
LSM2-208ENST00000375661 SCAF1Q9H7N4 1312 aaKnown RBP19.23■□□□□ 0.67
LSM2-208ENST00000375661 PIP4K2BP78356 416 aa19.22■□□□□ 0.67
LSM2-208ENST00000375661 LRRC9Q6ZRR7 1453 aa19.22■□□□□ 0.67
LSM2-208ENST00000375661 STRCP1A6NGW2 1772 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 MROH1Q8NDA8 1641 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 ALKQ9UM73 1620 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 ERVK-7P63135 1459 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 CEP152O94986 1710 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 UBR1Q8IWV7 1749 aa19.2■□□□□ 0.66
LSM2-208ENST00000375661 MAP3K1Q13233 1512 aa19.19■□□□□ 0.66
LSM2-208ENST00000375661 CFAP65Q6ZU64 1925 aaKnown RBP19.17■□□□□ 0.66
LSM2-208ENST00000375661 VPS8Q8N3P4 1428 aa19.17■□□□□ 0.66
LSM2-208ENST00000375661 DUOX2Q9NRD8 1548 aa19.16■□□□□ 0.66
LSM2-208ENST00000375661 LRRC7Q96NW7 1537 aa19.15■□□□□ 0.66
LSM2-208ENST00000375661 MYOM3Q5VTT5 1437 aa19.13■□□□□ 0.65
LSM2-208ENST00000375661 SCAF11Q99590 1463 aaKnown RBP19.12■□□□□ 0.65
LSM2-208ENST00000375661 CROCC2H7BZ55 1655 aa19.11■□□□□ 0.65
LSM2-208ENST00000375661 SLIT1O75093 1534 aa19.11■□□□□ 0.65
LSM2-208ENST00000375661 PRDM15P57071 1507 aaPredicted RBP19.11■□□□□ 0.65
LSM2-208ENST00000375661 ARHGAP31Q2M1Z3 1444 aa19.11■□□□□ 0.65
LSM2-208ENST00000375661 ARHGAP23Q9P227 1491 aa19.1■□□□□ 0.65
LSM2-208ENST00000375661 ERBINQ96RT1 1412 aa19.08■□□□□ 0.65
LSM2-208ENST00000375661 KDM5AP29375 1690 aaKnown RBP19.08■□□□□ 0.65
LSM2-208ENST00000375661 XIRP1Q702N8 1843 aaKnown RBP19.08■□□□□ 0.64
LSM2-208ENST00000375661 PHF23Q9BUL5 403 aaPredicted RBP19.07■□□□□ 0.64
LSM2-208ENST00000375661 KIF15Q9NS87 1388 aa19.05■□□□□ 0.64
LSM2-208ENST00000375661 PIK3C2BO00750 1634 aa19.04■□□□□ 0.64
LSM2-208ENST00000375661 KANK4Q5T7N3 995 aaPredicted RBP19.04■□□□□ 0.64
LSM2-208ENST00000375661 PTPN23Q9H3S7 1636 aa19.03■□□□□ 0.64
LSM2-208ENST00000375661 TXNDC2Q86VQ3 553 aa19.03■□□□□ 0.64
LSM2-208ENST00000375661 LTKP29376 864 aa19.02■□□□□ 0.64
LSM2-208ENST00000375661 EID1Q9Y6B2 187 aa19.02■□□□□ 0.64
LSM2-208ENST00000375661 ABCC5O15440 1437 aa19.01■□□□□ 0.63
LSM2-208ENST00000375661 KANK1Q14678 1352 aa19■□□□□ 0.63
LSM2-208ENST00000375661 LMTK2Q8IWU2 1503 aa19■□□□□ 0.63
LSM2-208ENST00000375661 TMEM2Q9UHN6 1383 aa18.99■□□□□ 0.63
LSM2-208ENST00000375661 EFCAB6Q5THR3 1501 aa18.98■□□□□ 0.63
LSM2-208ENST00000375661 DAPK1P53355 1430 aa18.98■□□□□ 0.63
LSM2-208ENST00000375661 RRP7BPQ9NSQ0 103 aa18.97■□□□□ 0.63
LSM2-208ENST00000375661 FAM135BQ49AJ0 1406 aa18.96■□□□□ 0.63
LSM2-208ENST00000375661 STAG3Q9UJ98 1225 aa18.94■□□□□ 0.62
LSM2-208ENST00000375661 TET3O43151 1660 aa18.94■□□□□ 0.62
LSM2-208ENST00000375661 ANKRD30AQ9BXX3 1397 aa18.93■□□□□ 0.62
LSM2-208ENST00000375661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.62
LSM2-208ENST00000375661 FGD6Q6ZV73 1430 aa18.92■□□□□ 0.62
LSM2-208ENST00000375661 SENP3Q9H4L4 574 aaPredicted RBP18.92■□□□□ 0.62
LSM2-208ENST00000375661 KCNA6P17658 529 aa18.91■□□□□ 0.62
LSM2-208ENST00000375661 APLP2Q06481 763 aa18.91■□□□□ 0.62
LSM2-208ENST00000375661 IDI1Q13907 227 aa18.91■□□□□ 0.62
LSM2-208ENST00000375661 NOS1P29475 1434 aa18.91■□□□□ 0.62
LSM2-208ENST00000375661 ADGRB3O60242 1522 aa18.9■□□□□ 0.62
LSM2-208ENST00000375661 NWD1Q149M9 1564 aa18.9■□□□□ 0.62
LSM2-208ENST00000375661 TMEM94Q12767 1356 aa18.9■□□□□ 0.62
LSM2-208ENST00000375661 ROBO1Q9Y6N7 1651 aa18.89■□□□□ 0.61
LSM2-208ENST00000375661 NKTRP30414 1462 aaKnown RBP18.89■□□□□ 0.61
LSM2-208ENST00000375661 ADGRL2O95490 1459 aa18.87■□□□□ 0.61
LSM2-208ENST00000375661 RPRD2Q5VT52 1461 aaKnown RBP18.87■□□□□ 0.61
LSM2-208ENST00000375661 SLC52A1Q9NWF4 448 aa18.87■□□□□ 0.61
LSM2-208ENST00000375661 RGS17Q9UGC6 210 aaPredicted RBP18.87■□□□□ 0.61
LSM2-208ENST00000375661 CHD2O14647 1828 aaKnown RBP18.85■□□□□ 0.61
LSM2-208ENST00000375661 MYO5BQ9ULV0 1848 aa18.84■□□□□ 0.61
LSM2-208ENST00000375661 PROSER2Q86WR7 435 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms