RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 NISCHQ9Y2I1 1504 aa30.65■■■□□ 2.5
LSM2-208ENST00000375661 ABCC9O60706 1549 aa27.75■■■□□ 2.03
LSM2-208ENST00000375661 CCDC180Q9P1Z9 1646 aa27.71■■■□□ 2.03
LSM2-208ENST00000375661 RB1CC1Q8TDY2 1594 aa26.43■■□□□ 1.82
LSM2-208ENST00000375661 NACADO15069 1562 aa26.2■■□□□ 1.79
LSM2-208ENST00000375661 DNAJC5BQ9UF47 199 aa26.18■■□□□ 1.78
LSM2-208ENST00000375661 UNC13AQ9UPW8 1703 aa25.86■■□□□ 1.73
LSM2-208ENST00000375661 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
LSM2-208ENST00000375661 MYO15BQ96JP2 1530 aa25.82■■□□□ 1.72
LSM2-208ENST00000375661 PABPN1Q86U42 306 aaKnown RBP eCLIP25.73■■□□□ 1.71
LSM2-208ENST00000375661 BICRAQ9NZM4 1560 aa25.63■■□□□ 1.69
LSM2-208ENST00000375661 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
LSM2-208ENST00000375661 SHROOM4Q9ULL8 1493 aa25.37■■□□□ 1.65
LSM2-208ENST00000375661 ZCCHC6Q5VYS8 1495 aaKnown RBP25.36■■□□□ 1.65
LSM2-208ENST00000375661 CC2D2AQ9P2K1 1620 aa25.13■■□□□ 1.61
LSM2-208ENST00000375661 SCRIBQ14160 1630 aa25.1■■□□□ 1.61
LSM2-208ENST00000375661 CECR2Q9BXF3 1484 aa25.06■■□□□ 1.6
LSM2-208ENST00000375661 EIF4G1Q04637 1599 aaKnown RBP25.02■■□□□ 1.6
LSM2-208ENST00000375661 DNAJC5Q9H3Z4 198 aa24.29■■□□□ 1.48
LSM2-208ENST00000375661 NCAPD3P42695 1498 aa24.15■■□□□ 1.46
LSM2-208ENST00000375661 CUX2O14529 1486 aa24.12■■□□□ 1.45
LSM2-208ENST00000375661 ATAD2BQ9ULI0 1458 aa24.02■■□□□ 1.44
LSM2-208ENST00000375661 ERCC6Q03468 1493 aa24.01■■□□□ 1.43
LSM2-208ENST00000375661 SMARCA2P51531 1590 aa24■■□□□ 1.43
LSM2-208ENST00000375661 HMGXB3Q12766 1538 aa24■■□□□ 1.43
LSM2-208ENST00000375661 SMARCA4P51532 1647 aa23.98■■□□□ 1.43
LSM2-208ENST00000375661 BAZ1AQ9NRL2 1556 aaPredicted RBP23.84■■□□□ 1.41
LSM2-208ENST00000375661 PEG3Q9GZU2 1588 aa23.79■■□□□ 1.4
LSM2-208ENST00000375661 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
LSM2-208ENST00000375661 NESP48681 1621 aa23.77■■□□□ 1.4
LSM2-208ENST00000375661 LAMC3Q9Y6N6 1575 aa23.69■■□□□ 1.38
LSM2-208ENST00000375661 THOC2Q8NI27 1593 aaKnown RBP23.67■■□□□ 1.38
LSM2-208ENST00000375661 MROH2BQ7Z745 1585 aa23.57■■□□□ 1.36
LSM2-208ENST00000375661 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
LSM2-208ENST00000375661 PDS5BQ9NTI5 1447 aa23.51■■□□□ 1.35
LSM2-208ENST00000375661 CADPSQ9ULU8 1353 aa23.39■■□□□ 1.33
LSM2-208ENST00000375661 MRC2Q9UBG0 1479 aa23.31■■□□□ 1.32
LSM2-208ENST00000375661 WIZO95785 1651 aa23.31■■□□□ 1.32
LSM2-208ENST00000375661 WDR62O43379 1518 aa23.29■■□□□ 1.32
LSM2-208ENST00000375661 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
LSM2-208ENST00000375661 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
LSM2-208ENST00000375661 CFTRP13569 1480 aa23.08■■□□□ 1.29
LSM2-208ENST00000375661 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
LSM2-208ENST00000375661 TOP2AP11388 1531 aaKnown RBP23.03■■□□□ 1.28
LSM2-208ENST00000375661 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
LSM2-208ENST00000375661 PRDM2Q13029 1718 aa22.97■■□□□ 1.27
LSM2-208ENST00000375661 URB2Q14146 1524 aaKnown RBP22.92■■□□□ 1.26
LSM2-208ENST00000375661 OSCARQ8IYS5 282 aa22.91■■□□□ 1.26
LSM2-208ENST00000375661 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
LSM2-208ENST00000375661 CCDC88BA6NC98 1476 aa22.72■■□□□ 1.23
LSM2-208ENST00000375661 RIMBP3CA6NJZ7 1639 aa22.68■■□□□ 1.22
LSM2-208ENST00000375661 RIMBP3BA6NNM3 1639 aa22.68■■□□□ 1.22
LSM2-208ENST00000375661 RIMBP3Q9UFD9 1639 aa22.68■■□□□ 1.22
LSM2-208ENST00000375661 ABCC8Q09428 1581 aa22.67■■□□□ 1.22
LSM2-208ENST00000375661 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
LSM2-208ENST00000375661 ZNF608Q9ULD9 1512 aaPredicted RBP22.66■■□□□ 1.22
LSM2-208ENST00000375661 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
LSM2-208ENST00000375661 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
LSM2-208ENST00000375661 ARHGEF11O15085 1522 aa22.56■■□□□ 1.2
LSM2-208ENST00000375661 TARBP1Q13395 1621 aaKnown RBP22.5■■□□□ 1.19
LSM2-208ENST00000375661 CHD1O14646 1710 aa22.49■■□□□ 1.19
LSM2-208ENST00000375661 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.188e-8■■■■□ 24.4
LSM2-208ENST00000375661 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
LSM2-208ENST00000375661 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
LSM2-208ENST00000375661 CYB5RLQ6IPT4 315 aa22.33■■□□□ 1.17
LSM2-208ENST00000375661 ARAP1Q96P48 1450 aa22.31■■□□□ 1.16
LSM2-208ENST00000375661 SOGA1O94964 1423 aa22.29■■□□□ 1.16
LSM2-208ENST00000375661 FBLN2P98095 1184 aa22.28■■□□□ 1.16
LSM2-208ENST00000375661 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
LSM2-208ENST00000375661 TDRD9Q8NDG6 1382 aaKnown RBP22.23■■□□□ 1.15
LSM2-208ENST00000375661 FGD5Q6ZNL6 1462 aa22.22■■□□□ 1.15
LSM2-208ENST00000375661 CLASP1Q7Z460 1538 aa22.21■■□□□ 1.15
LSM2-208ENST00000375661 SNAPC4Q5SXM2 1469 aa22.21■■□□□ 1.15
LSM2-208ENST00000375661 MAGI1Q96QZ7 1491 aaPredicted RBP22.21■■□□□ 1.15
LSM2-208ENST00000375661 SYNJ1O43426 1573 aa22.2■■□□□ 1.14
LSM2-208ENST00000375661 CUX1P39880 1505 aa22.16■■□□□ 1.14
LSM2-208ENST00000375661 TRHP20396 242 aaPredicted RBP22.15■■□□□ 1.14
LSM2-208ENST00000375661 GRIN2BQ13224 1484 aa22.15■■□□□ 1.14
LSM2-208ENST00000375661 CHMP7Q8WUX9 453 aaPredicted RBP22.13■■□□□ 1.13
LSM2-208ENST00000375661 SYNJ2O15056 1496 aa22.11■■□□□ 1.13
LSM2-208ENST00000375661 PBRM1Q86U86 1689 aa22.11■■□□□ 1.13
LSM2-208ENST00000375661 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
LSM2-208ENST00000375661 ABCA5Q8WWZ7 1642 aa22.01■■□□□ 1.11
LSM2-208ENST00000375661 ABCA10Q8WWZ4 1543 aa22.01■■□□□ 1.11
LSM2-208ENST00000375661 GRIN2AQ12879 1464 aa21.86■■□□□ 1.09
LSM2-208ENST00000375661 ADAMTS12P58397 1594 aa21.84■■□□□ 1.09
LSM2-208ENST00000375661 WRNQ14191 1432 aaPredicted RBP eCLIP21.84■■□□□ 1.09
LSM2-208ENST00000375661 BIVM-ERCC5R4GMW8 1640 aa21.84■■□□□ 1.09
LSM2-208ENST00000375661 NUP160Q12769 1436 aa21.8■■□□□ 1.08
LSM2-208ENST00000375661 TOP2BQ02880 1626 aa21.8■■□□□ 1.08
LSM2-208ENST00000375661 CEP170Q5SW79 1584 aa21.79■■□□□ 1.08
LSM2-208ENST00000375661 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
LSM2-208ENST00000375661 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
LSM2-208ENST00000375661 FHAD1B1AJZ9 1412 aa21.75■■□□□ 1.07
LSM2-208ENST00000375661 ERICH3Q5RHP9 1530 aa21.75■■□□□ 1.07
LSM2-208ENST00000375661 SUPT5HO00267 1087 aaKnown RBP21.71■■□□□ 1.07
LSM2-208ENST00000375661 AEBP2Q6ZN18 517 aaPredicted RBP21.71■■□□□ 1.07
LSM2-208ENST00000375661 KIF13AQ9H1H9 1805 aa21.62■■□□□ 1.05
LSM2-208ENST00000375661 PRG4Q92954 1404 aaPredicted RBP21.57■■□□□ 1.04
LSM2-208ENST00000375661 RUSC2Q8N2Y8 1516 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms