RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 DNMT1P26358 1616 aaKnown RBP22.02■■□□□ 1.12
CXCL12-202ENST00000374426 KDM5DQ9BY66 1539 aa22.01■■□□□ 1.11
CXCL12-202ENST00000374426 FAM135AQ9P2D6 1515 aa22.01■■□□□ 1.11
CXCL12-202ENST00000374426 ARHGEF5Q12774 1597 aa22■■□□□ 1.11
CXCL12-202ENST00000374426 PZPP20742 1482 aa22■■□□□ 1.11
CXCL12-202ENST00000374426 TNRQ92752 1358 aa21.99■■□□□ 1.11
CXCL12-202ENST00000374426 ILDR2Q71H61 639 aa21.99■■□□□ 1.11
CXCL12-202ENST00000374426 WASHC2CQ9Y4E1 1318 aa21.99■■□□□ 1.11
CXCL12-202ENST00000374426 VPS8Q8N3P4 1428 aa21.98■■□□□ 1.11
CXCL12-202ENST00000374426 LRRC9Q6ZRR7 1453 aa21.98■■□□□ 1.11
CXCL12-202ENST00000374426 TSPY4P0CV99 314 aa21.96■■□□□ 1.11
CXCL12-202ENST00000374426 TSPY10P0CW01 314 aa21.96■■□□□ 1.11
CXCL12-202ENST00000374426 LOC105371045A0A1W2PR82 267 aa21.95■■□□□ 1.1
CXCL12-202ENST00000374426 UBAP1LF5GYI3 381 aa21.95■■□□□ 1.1
CXCL12-202ENST00000374426 SPATA31D1Q6ZQQ2 1576 aa21.93■■□□□ 1.1
CXCL12-202ENST00000374426 NEURL4Q96JN8 1562 aa21.93■■□□□ 1.1
CXCL12-202ENST00000374426 MIA2Q96PC5 1412 aa21.92■■□□□ 1.1
CXCL12-202ENST00000374426 KANK4Q5T7N3 995 aaPredicted RBP21.91■■□□□ 1.1
CXCL12-202ENST00000374426 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.9■■□□□ 1.1
CXCL12-202ENST00000374426 POLR1AO95602 1720 aaPredicted RBP21.9■■□□□ 1.1
CXCL12-202ENST00000374426 MAST1Q9Y2H9 1570 aa21.9■■□□□ 1.1
CXCL12-202ENST00000374426 NLRP1Q9C000 1473 aa21.9■■□□□ 1.1
CXCL12-202ENST00000374426 RNF17Q9BXT8 1623 aaKnown RBP21.88■■□□□ 1.09
CXCL12-202ENST00000374426 MAP3K1Q13233 1512 aa21.88■■□□□ 1.09
CXCL12-202ENST00000374426 ANKLE2Q86XL3 938 aa21.87■■□□□ 1.09
CXCL12-202ENST00000374426 THEMISQ8N1K5 641 aaPredicted RBP21.87■■□□□ 1.09
CXCL12-202ENST00000374426 UGGT1Q9NYU2 1555 aa21.87■■□□□ 1.09
CXCL12-202ENST00000374426 ABCC3O15438 1527 aa21.86■■□□□ 1.09
CXCL12-202ENST00000374426 MYOM3Q5VTT5 1437 aa21.86■■□□□ 1.09
CXCL12-202ENST00000374426 SHANK2Q9UPX8 1470 aa21.85■■□□□ 1.09
CXCL12-202ENST00000374426 SOCS7O14512 581 aa21.85■■□□□ 1.09
CXCL12-202ENST00000374426 CPS1P31327 1500 aa21.84■■□□□ 1.09
CXCL12-202ENST00000374426 EIF2AK4Q9P2K8 1649 aaKnown RBP21.83■■□□□ 1.08
CXCL12-202ENST00000374426 MED14O60244 1454 aa21.83■■□□□ 1.08
CXCL12-202ENST00000374426 ZC3H13Q5T200 1668 aaKnown RBP21.82■■□□□ 1.08
CXCL12-202ENST00000374426 MROH1Q8NDA8 1641 aa21.82■■□□□ 1.08
CXCL12-202ENST00000374426 NPHP4O75161 1426 aaPredicted RBP21.81■■□□□ 1.08
CXCL12-202ENST00000374426 DEPDC5O75140 1603 aa21.81■■□□□ 1.08
CXCL12-202ENST00000374426 VWDEQ8N2E2 1590 aa21.81■■□□□ 1.08
CXCL12-202ENST00000374426 ERVK-7P63135 1459 aa21.8■■□□□ 1.08
CXCL12-202ENST00000374426 DUOX2Q9NRD8 1548 aa21.77■■□□□ 1.08
CXCL12-202ENST00000374426 TOM1O60784 492 aa21.76■■□□□ 1.07
CXCL12-202ENST00000374426 PIP4K2BP78356 416 aa21.76■■□□□ 1.07
CXCL12-202ENST00000374426 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
CXCL12-202ENST00000374426 IQGAP1P46940 1657 aa21.75■■□□□ 1.07
CXCL12-202ENST00000374426 CEP152O94986 1710 aa21.75■■□□□ 1.07
CXCL12-202ENST00000374426 HSPA1LP34931 641 aa21.74■■□□□ 1.07
CXCL12-202ENST00000374426 KIF15Q9NS87 1388 aa21.74■■□□□ 1.07
CXCL12-202ENST00000374426 ABCC5O15440 1437 aa21.73■■□□□ 1.07
CXCL12-202ENST00000374426 PRDM15P57071 1507 aaPredicted RBP21.71■■□□□ 1.07
CXCL12-202ENST00000374426 RRP7BPQ9NSQ0 103 aa21.7■■□□□ 1.06
CXCL12-202ENST00000374426 CFAP65Q6ZU64 1925 aaKnown RBP21.7■■□□□ 1.06
CXCL12-202ENST00000374426 ARHGAP31Q2M1Z3 1444 aa21.7■■□□□ 1.06
CXCL12-202ENST00000374426 ERBINQ96RT1 1412 aa21.7■■□□□ 1.06
CXCL12-202ENST00000374426 PTPN23Q9H3S7 1636 aa21.69■■□□□ 1.06
CXCL12-202ENST00000374426 ALKQ9UM73 1620 aa21.69■■□□□ 1.06
CXCL12-202ENST00000374426 CROCC2H7BZ55 1655 aa21.69■■□□□ 1.06
CXCL12-202ENST00000374426 UBR1Q8IWV7 1749 aa21.69■■□□□ 1.06
CXCL12-202ENST00000374426 STRCP1A6NGW2 1772 aa21.68■■□□□ 1.06
CXCL12-202ENST00000374426 DAPK1P53355 1430 aa21.67■■□□□ 1.06
CXCL12-202ENST00000374426 LRRC7Q96NW7 1537 aa21.66■■□□□ 1.06
CXCL12-202ENST00000374426 SCAF11Q99590 1463 aaKnown RBP21.66■■□□□ 1.06
CXCL12-202ENST00000374426 ARHGAP23Q9P227 1491 aa21.65■■□□□ 1.06
CXCL12-202ENST00000374426 FGD6Q6ZV73 1430 aa21.65■■□□□ 1.06
CXCL12-202ENST00000374426 LTKP29376 864 aa21.65■■□□□ 1.06
CXCL12-202ENST00000374426 APLP2Q06481 763 aa21.65■■□□□ 1.06
CXCL12-202ENST00000374426 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.64■■□□□ 1.05
CXCL12-202ENST00000374426 SLIT1O75093 1534 aa21.64■■□□□ 1.05
CXCL12-202ENST00000374426 MED1Q15648 1581 aaPredicted RBP21.62■■□□□ 1.05
CXCL12-202ENST00000374426 TXNDC2Q86VQ3 553 aa21.62■■□□□ 1.05
CXCL12-202ENST00000374426 SYNMO15061 1565 aa21.61■■□□□ 1.05
CXCL12-202ENST00000374426 KANK1Q14678 1352 aa21.6■■□□□ 1.05
CXCL12-202ENST00000374426 CHIC2Q9UKJ5 165 aa21.59■■□□□ 1.05
CXCL12-202ENST00000374426 ANKRD30AQ9BXX3 1397 aa21.59■■□□□ 1.05
CXCL12-202ENST00000374426 PIK3C2BO00750 1634 aa21.58■■□□□ 1.04
CXCL12-202ENST00000374426 LMTK2Q8IWU2 1503 aa21.57■■□□□ 1.04
CXCL12-202ENST00000374426 EID1Q9Y6B2 187 aa21.57■■□□□ 1.04
CXCL12-202ENST00000374426 TMEM2Q9UHN6 1383 aa21.57■■□□□ 1.04
CXCL12-202ENST00000374426 IDI1Q13907 227 aa21.54■■□□□ 1.04
CXCL12-202ENST00000374426 STAG3Q9UJ98 1225 aa21.53■■□□□ 1.04
CXCL12-202ENST00000374426 EFCAB6Q5THR3 1501 aa21.52■■□□□ 1.04
CXCL12-202ENST00000374426 SENP3Q9H4L4 574 aaPredicted RBP21.52■■□□□ 1.04
CXCL12-202ENST00000374426 NOS1P29475 1434 aa21.51■■□□□ 1.03
CXCL12-202ENST00000374426 ADGRL2O95490 1459 aa21.51■■□□□ 1.03
CXCL12-202ENST00000374426 KDM5AP29375 1690 aaKnown RBP21.5■■□□□ 1.03
CXCL12-202ENST00000374426 XIRP1Q702N8 1843 aaKnown RBP21.49■■□□□ 1.03
CXCL12-202ENST00000374426 PHF23Q9BUL5 403 aaPredicted RBP21.46■■□□□ 1.03
CXCL12-202ENST00000374426 TET3O43151 1660 aa21.45■■□□□ 1.02
CXCL12-202ENST00000374426 FAM50AQ14320 339 aaKnown RBP21.45■■□□□ 1.02
CXCL12-202ENST00000374426 ADGRB3O60242 1522 aa21.45■■□□□ 1.02
CXCL12-202ENST00000374426 SLC26A8Q96RN1 970 aa21.44■■□□□ 1.02
CXCL12-202ENST00000374426 TMEM94Q12767 1356 aa21.44■■□□□ 1.02
CXCL12-202ENST00000374426 ANKRD50Q9ULJ7 1429 aa21.44■■□□□ 1.02
CXCL12-202ENST00000374426 KCNA6P17658 529 aa21.43■■□□□ 1.02
CXCL12-202ENST00000374426 SLC52A1Q9NWF4 448 aa21.43■■□□□ 1.02
CXCL12-202ENST00000374426 RPRD2Q5VT52 1461 aaKnown RBP21.41■■□□□ 1.02
CXCL12-202ENST00000374426 FAM135BQ49AJ0 1406 aa21.4■■□□□ 1.02
CXCL12-202ENST00000374426 RBM33Q96EV2 1170 aaKnown RBP21.38■■□□□ 1.01
CXCL12-202ENST00000374426 PROSER2Q86WR7 435 aaPredicted RBP21.37■■□□□ 1.01
CXCL12-202ENST00000374426 ZFYVE9O95405 1425 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 1232.2 ms