RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 NISCHQ9Y2I1 1504 aa34.81■■■■□ 3.16
CXCL12-202ENST00000374426 ABCC9O60706 1549 aa31.39■■■□□ 2.61
CXCL12-202ENST00000374426 CCDC180Q9P1Z9 1646 aa31.24■■■□□ 2.59
CXCL12-202ENST00000374426 RB1CC1Q8TDY2 1594 aa29.81■■■□□ 2.36
CXCL12-202ENST00000374426 NACADO15069 1562 aa29.59■■■□□ 2.33
CXCL12-202ENST00000374426 DNAJC5BQ9UF47 199 aa29.58■■■□□ 2.33
CXCL12-202ENST00000374426 DCAF8L2P0C7V8 631 aa29.41■■■□□ 2.3
CXCL12-202ENST00000374426 PABPN1Q86U42 306 aaKnown RBP eCLIP29.23■■■□□ 2.27
CXCL12-202ENST00000374426 MYO15BQ96JP2 1530 aa29.16■■■□□ 2.26
CXCL12-202ENST00000374426 UNC13AQ9UPW8 1703 aa29.12■■■□□ 2.25
CXCL12-202ENST00000374426 BICRAQ9NZM4 1560 aa28.98■■■□□ 2.23
CXCL12-202ENST00000374426 ZCCHC6Q5VYS8 1495 aaKnown RBP28.84■■■□□ 2.21
CXCL12-202ENST00000374426 DCAF1Q9Y4B6 1507 aa28.75■■■□□ 2.19
CXCL12-202ENST00000374426 SHROOM4Q9ULL8 1493 aa28.55■■■□□ 2.16
CXCL12-202ENST00000374426 SCRIBQ14160 1630 aa28.49■■■□□ 2.15
CXCL12-202ENST00000374426 CC2D2AQ9P2K1 1620 aa28.34■■■□□ 2.13
CXCL12-202ENST00000374426 CECR2Q9BXF3 1484 aa28.28■■■□□ 2.12
CXCL12-202ENST00000374426 EIF4G1Q04637 1599 aaKnown RBP28.26■■■□□ 2.11
CXCL12-202ENST00000374426 NCAPD3P42695 1498 aa27.34■■□□□ 1.97
CXCL12-202ENST00000374426 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
CXCL12-202ENST00000374426 DNAJC5Q9H3Z4 198 aa27.21■■□□□ 1.95
CXCL12-202ENST00000374426 SMARCA4P51532 1647 aa27.17■■□□□ 1.94
CXCL12-202ENST00000374426 SMARCA2P51531 1590 aa27.14■■□□□ 1.93
CXCL12-202ENST00000374426 HMGXB3Q12766 1538 aa27.11■■□□□ 1.93
CXCL12-202ENST00000374426 ERCC6Q03468 1493 aa27.09■■□□□ 1.93
CXCL12-202ENST00000374426 CUX2O14529 1486 aa27.08■■□□□ 1.93
CXCL12-202ENST00000374426 BAZ1AQ9NRL2 1556 aaPredicted RBP27.01■■□□□ 1.92
CXCL12-202ENST00000374426 BAZ1BQ9UIG0 1483 aaKnown RBP26.96■■□□□ 1.91
CXCL12-202ENST00000374426 NESP48681 1621 aa26.95■■□□□ 1.91
CXCL12-202ENST00000374426 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
CXCL12-202ENST00000374426 MROH2BQ7Z745 1585 aa26.84■■□□□ 1.89
CXCL12-202ENST00000374426 LAMC3Q9Y6N6 1575 aa26.71■■□□□ 1.87
CXCL12-202ENST00000374426 THOC2Q8NI27 1593 aaKnown RBP26.67■■□□□ 1.86
CXCL12-202ENST00000374426 PDS5BQ9NTI5 1447 aa26.57■■□□□ 1.84
CXCL12-202ENST00000374426 KIF21AQ7Z4S6 1674 aa26.55■■□□□ 1.84
CXCL12-202ENST00000374426 CADPSQ9ULU8 1353 aa26.5■■□□□ 1.83
CXCL12-202ENST00000374426 WIZO95785 1651 aa26.48■■□□□ 1.83
CXCL12-202ENST00000374426 MRC2Q9UBG0 1479 aa26.36■■□□□ 1.81
CXCL12-202ENST00000374426 WDR62O43379 1518 aa26.29■■□□□ 1.8
CXCL12-202ENST00000374426 RSF1Q96T23 1441 aaPredicted RBP26.25■■□□□ 1.79
CXCL12-202ENST00000374426 CEP164Q9UPV0 1460 aa26.22■■□□□ 1.79
CXCL12-202ENST00000374426 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.78
CXCL12-202ENST00000374426 CFTRP13569 1480 aa26.18■■□□□ 1.78
CXCL12-202ENST00000374426 TOP2AP11388 1531 aaKnown RBP26.15■■□□□ 1.78
CXCL12-202ENST00000374426 URB2Q14146 1524 aaKnown RBP26■■□□□ 1.75
CXCL12-202ENST00000374426 TRIM41Q8WV44 630 aa25.95■■□□□ 1.74
CXCL12-202ENST00000374426 CCDC88BA6NC98 1476 aa25.87■■□□□ 1.73
CXCL12-202ENST00000374426 PRDM2Q13029 1718 aa25.84■■□□□ 1.73
CXCL12-202ENST00000374426 OSCARQ8IYS5 282 aa25.83■■□□□ 1.73
CXCL12-202ENST00000374426 IFT140Q96RY7 1462 aa25.71■■□□□ 1.71
CXCL12-202ENST00000374426 ZNF608Q9ULD9 1512 aaPredicted RBP25.7■■□□□ 1.7
CXCL12-202ENST00000374426 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
CXCL12-202ENST00000374426 ABCC8Q09428 1581 aa25.6■■□□□ 1.69
CXCL12-202ENST00000374426 DNMBPQ6XZF7 1577 aa25.57■■□□□ 1.68
CXCL12-202ENST00000374426 EIF4G3O43432 1585 aaKnown RBP25.52■■□□□ 1.68
CXCL12-202ENST00000374426 RIMBP3CA6NJZ7 1639 aa25.5■■□□□ 1.67
CXCL12-202ENST00000374426 RIMBP3BA6NNM3 1639 aa25.5■■□□□ 1.67
CXCL12-202ENST00000374426 RIMBP3Q9UFD9 1639 aa25.5■■□□□ 1.67
CXCL12-202ENST00000374426 TARBP1Q13395 1621 aaKnown RBP25.47■■□□□ 1.67
CXCL12-202ENST00000374426 AQRO60306 1485 aaKnown RBP eCLIP25.45■■□□□ 1.66
CXCL12-202ENST00000374426 POLA1P09884 1462 aaPredicted RBP25.43■■□□□ 1.66
CXCL12-202ENST00000374426 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
CXCL12-202ENST00000374426 RAD54L2Q9Y4B4 1467 aa25.34■■□□□ 1.65
CXCL12-202ENST00000374426 CHD1O14646 1710 aa25.33■■□□□ 1.65
CXCL12-202ENST00000374426 SOGA1O94964 1423 aa25.3■■□□□ 1.64
CXCL12-202ENST00000374426 FBLN2P98095 1184 aa25.28■■□□□ 1.64
CXCL12-202ENST00000374426 TDRD9Q8NDG6 1382 aaKnown RBP25.28■■□□□ 1.64
CXCL12-202ENST00000374426 CYB5RLQ6IPT4 315 aa25.25■■□□□ 1.63
CXCL12-202ENST00000374426 FGD5Q6ZNL6 1462 aa25.25■■□□□ 1.63
CXCL12-202ENST00000374426 CUX1P39880 1505 aa25.22■■□□□ 1.63
CXCL12-202ENST00000374426 SNAPC4Q5SXM2 1469 aa25.18■■□□□ 1.62
CXCL12-202ENST00000374426 ARAP1Q96P48 1450 aa25.18■■□□□ 1.62
CXCL12-202ENST00000374426 WDR97A6NE52 1622 aa25.17■■□□□ 1.62
CXCL12-202ENST00000374426 MAGI1Q96QZ7 1491 aaPredicted RBP25.1■■□□□ 1.61
CXCL12-202ENST00000374426 GRIN2BQ13224 1484 aa25.09■■□□□ 1.61
CXCL12-202ENST00000374426 CHMP7Q8WUX9 453 aaPredicted RBP25.08■■□□□ 1.61
CXCL12-202ENST00000374426 CLASP1Q7Z460 1538 aa25.07■■□□□ 1.6
CXCL12-202ENST00000374426 SYNJ2O15056 1496 aa25.02■■□□□ 1.6
CXCL12-202ENST00000374426 SYNJ1O43426 1573 aa25.02■■□□□ 1.6
CXCL12-202ENST00000374426 SUPT5HO00267 1087 aaKnown RBP24.99■■□□□ 1.59
CXCL12-202ENST00000374426 GAPVD1Q14C86 1478 aa24.99■■□□□ 1.59
CXCL12-202ENST00000374426 TRHP20396 242 aaPredicted RBP24.98■■□□□ 1.59
CXCL12-202ENST00000374426 ABCA10Q8WWZ4 1543 aa24.96■■□□□ 1.59
CXCL12-202ENST00000374426 PBRM1Q86U86 1689 aa24.94■■□□□ 1.58
CXCL12-202ENST00000374426 ABCA5Q8WWZ7 1642 aa24.92■■□□□ 1.58
CXCL12-202ENST00000374426 WRNQ14191 1432 aaPredicted RBP eCLIP24.84■■□□□ 1.57
CXCL12-202ENST00000374426 GRIN2AQ12879 1464 aa24.77■■□□□ 1.56
CXCL12-202ENST00000374426 TOP2BQ02880 1626 aa24.77■■□□□ 1.56
CXCL12-202ENST00000374426 BIVM-ERCC5R4GMW8 1640 aa24.75■■□□□ 1.55
CXCL12-202ENST00000374426 ADAMTS12P58397 1594 aa24.74■■□□□ 1.55
CXCL12-202ENST00000374426 NUP160Q12769 1436 aa24.7■■□□□ 1.55
CXCL12-202ENST00000374426 CEP170Q5SW79 1584 aa24.69■■□□□ 1.54
CXCL12-202ENST00000374426 ERCC6L2Q5T890 1561 aa24.69■■□□□ 1.54
CXCL12-202ENST00000374426 FHAD1B1AJZ9 1412 aa24.67■■□□□ 1.54
CXCL12-202ENST00000374426 ERICH3Q5RHP9 1530 aa24.63■■□□□ 1.53
CXCL12-202ENST00000374426 SHROOM2Q13796 1616 aa24.59■■□□□ 1.53
CXCL12-202ENST00000374426 PRG4Q92954 1404 aaPredicted RBP24.47■■□□□ 1.51
CXCL12-202ENST00000374426 JPH4Q96JJ6 628 aa24.45■■□□□ 1.5
CXCL12-202ENST00000374426 RUSC2Q8N2Y8 1516 aa24.4■■□□□ 1.5
CXCL12-202ENST00000374426 IGF1RP08069 1367 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms