RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Htatsf1Q8BGC0 757 aa16.48■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Dnttip2Q8R2M2 758 aaKnown RBP16.48■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Gm20521D3Z5F7 333 aa16.47■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Lmod3E9QA62 571 aa16.47■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Trim44Q9QXA7 346 aa16.47■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Rapgef6Q5NCJ1 1609 aa16.46■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Esx1O88933 382 aa16.46■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Dhx57Q6P5D3 1388 aaKnown RBP16.46■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Gm6268A2A3U9 297 aa16.46■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Rpgrip1lQ8CG73 1264 aa16.46■□□□□ 0.23
Clcn3-201ENSMUST00000004430 Abca16E9PWJ7 1678 aa16.45■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Arhgef40Q3UPH7 1517 aa16.45■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Cluap1Q8R3P7 413 aa16.45■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Camsap2Q8C1B1 1461 aa16.44■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Stk24Q99KH8 431 aa16.44■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Shroom2A2ALU4 1481 aa16.43■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Tdrd9Q14BI7 1383 aa16.42■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Taok2Q6ZQ29 1240 aa16.42■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Inpp5dQ9ES52 1191 aa16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 PnisrA2AJT4 805 aaKnown RBP16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Pank3Q8R2W9 370 aa16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Q7TT23 1179 aa16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 AknaQ80VW7 1404 aa16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Senp3Q9EP97 568 aaKnown RBP16.41■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Il16O54824 1322 aa16.39■□□□□ 0.22
Clcn3-201ENSMUST00000004430 Slc4a1apE9PX68 744 aa16.39■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Eif2s2Q99L45 331 aaKnown RBP16.39■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Ttll13A4Q9F6 804 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 AU015836B2RUM3 263 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Srpk2O54781 681 aaKnown RBP16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Magi1Q6RHR9 1471 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Cul7Q8VE73 1689 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Ccdc141E9Q8Q6 1531 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 L3mbtl2P59178 703 aa16.38■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Pbrm1Q8BSQ9 1634 aaKnown RBP16.37■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Ipo8Q7TMY7 1010 aa16.37■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Jph4Q80WT0 628 aa16.37■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Dapk1Q80YE7 1442 aa16.37■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Fam163aQ8CAA5 168 aa16.37■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Adcy10Q8C0T9 1614 aa16.36■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Dcaf11Q91VU6 549 aa16.36■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Rprd2Q6NXI6 1469 aaKnown RBP16.36■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Fhod3Q76LL6 1578 aa16.36■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Znf330Q922H9 316 aa16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Mbd3Q9Z2D8 285 aaKnown RBP16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Arhgef11Q68FM7 1552 aa16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Dhx9O70133 1380 aaKnown RBP16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Nup155Q99P88 1391 aaKnown RBP16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Liat1Q810M6 228 aa16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Kdm6bQ5NCY0 1641 aa16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Setd1bQ8CFT2 1985 aa16.35■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Pabpn1Q8CCS6 302 aaKnown RBP16.34■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Ttll5Q8CHB8 1328 aa16.34■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Tmf1B9EKI3 1091 aa16.34■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Abcc2Q8VI47 1543 aa16.34■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Adgrb2Q8CGM1 1561 aa16.33■□□□□ 0.21
Clcn3-201ENSMUST00000004430 Ppp1r18Q8BQ30 594 aa16.33■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Iqcf3Q9D498 203 aa16.33■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Zfp444Q3TDV8 331 aaKnown RBP16.33■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Mfap1aC0HKD8 439 aaKnown RBP16.32■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Mfap1bC0HKD9 439 aaKnown RBP16.32■□□□□ 0.2
Clcn3-201ENSMUST00000004430 NudcO35685 332 aaKnown RBP16.32■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Lrriq1Q0P5X1 1673 aa16.32■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Neo1P97798 1493 aa16.31■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Safb2Q80YR5 991 aaKnown RBP16.31■□□□□ 0.2
Clcn3-201ENSMUST00000004430 PtmaP26350 111 aa16.31■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Kdm3bQ6ZPY7 1562 aa16.31■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Golga2Q921M4 999 aa16.3■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Prex2Q3LAC4 1598 aa16.3■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Ak7Q9D2H2 614 aa16.3■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Pik3c2gO70167 1506 aa16.28■□□□□ 0.2
Clcn3-201ENSMUST00000004430 SphkapQ6NSW3 1687 aa16.28■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Fgd1P52734 960 aa16.28■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Srcin1Q9QWI6 1250 aa16.28■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Rock2P70336 1388 aa16.27■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Exosc9Q9JHI7 438 aaKnown RBP16.27■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Kiaa1551Q5DTW7 1521 aa16.27■□□□□ 0.2
Clcn3-201ENSMUST00000004430 Ncoa1P70365 1447 aa16.27■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Irx6Q9ER75 438 aa16.27■□□□□ 0.19
Clcn3-201ENSMUST00000004430 1700019A02RikA0A087WPV9 146 aa16.27■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Setbp1Q9Z180 1582 aa16.26■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Cdc42bpaQ3UU96 1719 aa16.26■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Prkrip1Q9CWV6 186 aaKnown RBP16.26■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Stag3O70576 1240 aa16.25■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Mlh3A0A1Y7VMP7 1443 aa16.25■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Tmco5bQ80X59 307 aa16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 GorabQ8BRM2 368 aa16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 AlkP97793 1621 aa16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 U2af1Q9D883 239 aaKnown RBP16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Ksr2Q3UVC0 959 aa16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Plin1Q8CGN5 517 aa16.24■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Mapk8ip3Q9ESN9 1337 aa16.23■□□□□ 0.19
Clcn3-201ENSMUST00000004430 SlkO54988 1233 aa16.23■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Sart1Q9Z315 806 aaKnown RBP16.23■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Rtn4Q99P72 1162 aaKnown RBP16.22■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Mapkbp1Q6NS57 1503 aa16.22■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Mre11Q61216 706 aa16.21■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Gtf2e1Q9D0D5 440 aa16.21■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Erich6bQ9D4S6 220 aa16.21■□□□□ 0.19
Clcn3-201ENSMUST00000004430 Fgd6Q69ZL1 1399 aa16.21■□□□□ 0.18
Retrieved 100 of 22,080 RNA–protein pairs in 13.5 ms