RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 NischQ80TM9 1593 aa22.68■■□□□ 1.22
Clcn3-201ENSMUST00000004430 Rhox8Q6VSS7 320 aa22.62■■□□□ 1.21
Clcn3-201ENSMUST00000004430 Gm35339A0A140LHH9 1649 aa21.94■■□□□ 1.1
Clcn3-201ENSMUST00000004430 Abcc9P70170 1546 aa21.91■■□□□ 1.1
Clcn3-201ENSMUST00000004430 Abcc8B2RUS7 1588 aa21.45■■□□□ 1.02
Clcn3-201ENSMUST00000004430 Ehmt2Q9Z148 1263 aaKnown RBP21.39■■□□□ 1.02
Clcn3-201ENSMUST00000004430 Rpgrip1Q9EPQ2 1331 aa21.03■□□□□ 0.96
Clcn3-201ENSMUST00000004430 Rtl1Q7M732 1744 aa20.59■□□□□ 0.89
Clcn3-201ENSMUST00000004430 Ccdc136Q3TVA9 1136 aa20.57■□□□□ 0.88
Clcn3-201ENSMUST00000004430 Ccdc180J3QNE4 1664 aa20.33■□□□□ 0.84
Clcn3-201ENSMUST00000004430 Acin1Q9JIX8 1338 aaKnown RBP20.28■□□□□ 0.84
Clcn3-201ENSMUST00000004430 Zeb1Q64318 1117 aa20.17■□□□□ 0.82
Clcn3-201ENSMUST00000004430 Trim41Q5NCC3 630 aa20.02■□□□□ 0.8
Clcn3-201ENSMUST00000004430 Gab3Q8BSM5 595 aa20.02■□□□□ 0.8
Clcn3-201ENSMUST00000004430 Pcgf6Q99NA9 353 aa20■□□□□ 0.79
Clcn3-201ENSMUST00000004430 ScribQ80U72 1612 aa19.92■□□□□ 0.78
Clcn3-201ENSMUST00000004430 Dcaf1Q80TR8 1506 aa19.9■□□□□ 0.78
Clcn3-201ENSMUST00000004430 Rb1cc1Q9ESK9 1588 aa19.88■□□□□ 0.77
Clcn3-201ENSMUST00000004430 Wdr66E9Q743 1299 aa19.85■□□□□ 0.77
Clcn3-201ENSMUST00000004430 Zcchc6Q5BLK4 1491 aaKnown RBP19.84■□□□□ 0.77
Clcn3-201ENSMUST00000004430 Cngb1E1AZ71 1325 aa19.84■□□□□ 0.77
Clcn3-201ENSMUST00000004430 Las1lA2BE28 776 aaKnown RBP19.76■□□□□ 0.75
Clcn3-201ENSMUST00000004430 Kdm5dQ62240 1548 aa19.68■□□□□ 0.74
Clcn3-201ENSMUST00000004430 Supt5hO55201 1082 aaKnown RBP19.65■□□□□ 0.74
Clcn3-201ENSMUST00000004430 Baz1aO88379 1555 aa19.6■□□□□ 0.73
Clcn3-201ENSMUST00000004430 HrcG5E8J6 738 aa19.57■□□□□ 0.72
Clcn3-201ENSMUST00000004430 NacadQ5SWP3 1504 aa19.55■□□□□ 0.72
Clcn3-201ENSMUST00000004430 Esf1Q3V1V3 845 aaKnown RBP19.49■□□□□ 0.71
Clcn3-201ENSMUST00000004430 Ppargc1bQ8VHJ7 1014 aa19.38■□□□□ 0.69
Clcn3-201ENSMUST00000004430 UbtfP25976 765 aaKnown RBP19.36■□□□□ 0.69
Clcn3-201ENSMUST00000004430 Myt1lP97500 1187 aa19.33■□□□□ 0.69
Clcn3-201ENSMUST00000004430 NefmP08553 848 aa19.29■□□□□ 0.68
Clcn3-201ENSMUST00000004430 Neurod1Q60867 357 aa19.18■□□□□ 0.66
Clcn3-201ENSMUST00000004430 Crybg2B7ZCC2 1516 aa19.11■□□□□ 0.65
Clcn3-201ENSMUST00000004430 Npm2Q80W85 207 aa19.09■□□□□ 0.65
Clcn3-201ENSMUST00000004430 Smarca2Q6DIC0 1577 aa19.09■□□□□ 0.65
Clcn3-201ENSMUST00000004430 Sycp2Q9CUU3 1500 aa19.08■□□□□ 0.65
Clcn3-201ENSMUST00000004430 CenpbP27790 599 aa19.07■□□□□ 0.64
Clcn3-201ENSMUST00000004430 Mier1Q5UAK0 511 aa19.04■□□□□ 0.64
Clcn3-201ENSMUST00000004430 Cdk11bP24788 784 aaKnown RBP19.03■□□□□ 0.64
Clcn3-201ENSMUST00000004430 Nop58Q6DFW4 536 aaKnown RBP18.94■□□□□ 0.62
Clcn3-201ENSMUST00000004430 Cep164Q5DU05 1446 aa18.91■□□□□ 0.62
Clcn3-201ENSMUST00000004430 Sall2Q9QX96 1004 aa18.9■□□□□ 0.62
Clcn3-201ENSMUST00000004430 Brd4Q9ESU6 1400 aaKnown RBP18.87■□□□□ 0.61
Clcn3-201ENSMUST00000004430 Ube2uB1AUC4 352 aa18.87■□□□□ 0.61
Clcn3-201ENSMUST00000004430 Gm38655A0A286YDK6 273 aa18.85■□□□□ 0.61
Clcn3-201ENSMUST00000004430 Csrnp3P59055 597 aa18.8■□□□□ 0.6
Clcn3-201ENSMUST00000004430 Chic1Q8CBW7 227 aa18.8■□□□□ 0.6
Clcn3-201ENSMUST00000004430 Cecr2E9Q2Z1 1453 aa18.78■□□□□ 0.6
Clcn3-201ENSMUST00000004430 Slc24a1Q91WD8 1130 aa18.78■□□□□ 0.6
Clcn3-201ENSMUST00000004430 Rsf1E9PWW9 1441 aaKnown RBP18.69■□□□□ 0.58
Clcn3-201ENSMUST00000004430 Golga3P55937 1487 aa18.64■□□□□ 0.57
Clcn3-201ENSMUST00000004430 Ap3b1Q9Z1T1 1105 aa18.6■□□□□ 0.57
Clcn3-201ENSMUST00000004430 Synj1Q8CHC4 1574 aa18.59■□□□□ 0.57
Clcn3-201ENSMUST00000004430 BicraF8VPZ9 1578 aa18.58■□□□□ 0.56
Clcn3-201ENSMUST00000004430 TonslQ6NZL6 1363 aa18.57■□□□□ 0.56
Clcn3-201ENSMUST00000004430 Ccdc88bQ4QRL3 1481 aa18.56■□□□□ 0.56
Clcn3-201ENSMUST00000004430 Anks4bQ8K3X6 423 aa18.54■□□□□ 0.56
Clcn3-201ENSMUST00000004430 Mapk8ip2Q9ERE9 830 aa18.52■□□□□ 0.56
Clcn3-201ENSMUST00000004430 Il27Q8K3I6 234 aa18.52■□□□□ 0.55
Clcn3-201ENSMUST00000004430 1700123L14RikQ3V2K7 440 aa18.51■□□□□ 0.55
Clcn3-201ENSMUST00000004430 Pelp1Q9DBD5 1123 aaKnown RBP18.51■□□□□ 0.55
Clcn3-201ENSMUST00000004430 CftrP26361 1476 aa18.5■□□□□ 0.55
Clcn3-201ENSMUST00000004430 Plekhg3Q4VAC9 1341 aa18.47■□□□□ 0.55
Clcn3-201ENSMUST00000004430 ClspnQ80YR7 1315 aa18.46■□□□□ 0.55
Clcn3-201ENSMUST00000004430 Aebp2Q9Z248 504 aaKnown RBP18.43■□□□□ 0.54
Clcn3-201ENSMUST00000004430 Eid3Q3V124 375 aa18.42■□□□□ 0.54
Clcn3-201ENSMUST00000004430 Fam50aQ9WV03 339 aaKnown RBP18.42■□□□□ 0.54
Clcn3-201ENSMUST00000004430 Ttbk1Q6PCN3 1308 aa18.4■□□□□ 0.54
Clcn3-201ENSMUST00000004430 NclP09405 707 aaKnown RBP18.4■□□□□ 0.54
Clcn3-201ENSMUST00000004430 Myt1Q8CFC2 1127 aa18.35■□□□□ 0.53
Clcn3-201ENSMUST00000004430 Stra8P70278 393 aa18.33■□□□□ 0.52
Clcn3-201ENSMUST00000004430 Eif5bQ05D44 1216 aaKnown RBP18.32■□□□□ 0.52
Clcn3-201ENSMUST00000004430 Cttnbp2B9EJA2 1648 aa18.32■□□□□ 0.52
Clcn3-201ENSMUST00000004430 Smarca4Q3TKT4 1613 aaKnown RBP18.29■□□□□ 0.52
Clcn3-201ENSMUST00000004430 Tnnt3Q9QZ47 272 aa18.29■□□□□ 0.52
Clcn3-201ENSMUST00000004430 Aplp2Q06335 707 aa18.23■□□□□ 0.51
Clcn3-201ENSMUST00000004430 Top2bQ64511 1612 aa18.19■□□□□ 0.5
Clcn3-201ENSMUST00000004430 Amer1Q7TS75 1132 aa18.18■□□□□ 0.5
Clcn3-201ENSMUST00000004430 Cc2d2aQ8CFW7 1633 aa18.14■□□□□ 0.49
Clcn3-201ENSMUST00000004430 DiexfQ8BTT6 772 aaKnown RBP18.13■□□□□ 0.49
Clcn3-201ENSMUST00000004430 Lmod2Q3UHZ5 550 aa18.12■□□□□ 0.49
Clcn3-201ENSMUST00000004430 Fmn1Q05860 1466 aa18.11■□□□□ 0.49
Clcn3-201ENSMUST00000004430 Iqgap2Q3UQ44 1575 aa18.06■□□□□ 0.48
Clcn3-201ENSMUST00000004430 Atad2bE9Q166 1460 aaKnown RBP18■□□□□ 0.47
Clcn3-201ENSMUST00000004430 NrdcQ8BHG1 1161 aa18■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Clip1Q922J3 1391 aa17.99■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Rapgef2Q8CHG7 1496 aa17.99■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Fam71e1A1L3C1 212 aa17.97■□□□□ 0.47
Clcn3-201ENSMUST00000004430 SafbD3YXK2 937 aaKnown RBP17.97■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Pds5bQ4VA53 1446 aaKnown RBP17.96■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Anp32aO35381 247 aa17.96■□□□□ 0.47
Clcn3-201ENSMUST00000004430 Top2aQ01320 1528 aaKnown RBP17.94■□□□□ 0.46
Clcn3-201ENSMUST00000004430 Cep162Q6ZQ06 1403 aa17.94■□□□□ 0.46
Clcn3-201ENSMUST00000004430 Hnrnpul2Q00PI9 745 aaKnown RBP17.87■□□□□ 0.45
Clcn3-201ENSMUST00000004430 4933416C03RikQ3V063 378 aa17.83■□□□□ 0.44
Clcn3-201ENSMUST00000004430 Calr4Q3TQS0 420 aa17.79■□□□□ 0.44
Clcn3-201ENSMUST00000004430 Kif15Q6P9L6 1387 aa17.78■□□□□ 0.44
Clcn3-201ENSMUST00000004430 Ppp4r2Q0VGB7 417 aa17.76■□□□□ 0.43
Clcn3-201ENSMUST00000004430 Ercc6F8VPZ5 1481 aa17.74■□□□□ 0.43
Retrieved 100 of 22,080 RNA–protein pairs in 27.5 ms