RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	YHR131C	P38835	850 aa		2.67	□□□□□ -1.98
SHE9	YDR393W	KEL1	P38853	1164 aa	Known RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	DPH1	P40487	425 aa	Known RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	GAB1	P41733	394 aa		2.67	□□□□□ -1.98
SHE9	YDR393W	YJR085C	P47131	105 aa	Known RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	MFB1	Q04922	465 aa		2.67	□□□□□ -1.98
SHE9	YDR393W	CUE5	Q08412	411 aa	Known RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	BRR1	Q99177	341 aa	Predicted RBP	2.67	□□□□□ -1.98
SHE9	YDR393W	TRP1	P00912	224 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	MBB1	P39534	108 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	MST28	P39552	234 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	ALG5	P40350	334 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	PNG1	Q02890	363 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	YKU80	Q04437	629 aa		2.66	□□□□□ -1.98
SHE9	YDR393W	YCK1	P23291	538 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	SEF1	P34228	1148 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	BMT2	P38278	337 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	ERP2	P39704	215 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	SSU1	P41930	458 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	URB2	P47108	1174 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	IMD4	P50094	524 aa	Known RBP	2.65	□□□□□ -1.98
SHE9	YDR393W	IES4	Q08561	116 aa		2.65	□□□□□ -1.98
SHE9	YDR393W	UTP18	P40362	594 aa	Predicted RBP	2.64	□□□□□ -1.99
SHE9	YDR393W	POP1	P41812	875 aa		2.64	□□□□□ -1.99
SHE9	YDR393W	MDG1	P53885	366 aa		2.64	□□□□□ -1.99
SHE9	YDR393W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	2.64	□□□□□ -1.99	not detected
SHE9	YDR393W	IRC25	Q07951	179 aa		2.64	□□□□□ -1.99
SHE9	YDR393W	RAV1	P47104	1357 aa		2.64	□□□□□ -1.99
SHE9	YDR393W	CCH1	P50077	2039 aa		2.64	□□□□□ -1.99
SHE9	YDR393W	LEU4	P06208	619 aa	Known RBP	2.63	□□□□□ -1.99
SHE9	YDR393W	RRN3	P36070	627 aa		2.63	□□□□□ -1.99
SHE9	YDR393W	YBR137W	P38276	179 aa		2.63	□□□□□ -1.99
SHE9	YDR393W	SLG1	P54867	378 aa		2.63	□□□□□ -1.99
SHE9	YDR393W	PRB1	P09232	635 aa		2.62	□□□□□ -1.99
SHE9	YDR393W	MUM2	P38236	366 aa		2.62	□□□□□ -1.99
SHE9	YDR393W	YMR147W	P40218	223 aa	Known RBP	2.62	□□□□□ -1.99
SHE9	YDR393W	PPM1	Q04081	328 aa		2.62	□□□□□ -1.99
SHE9	YDR393W	CHS3	P29465	1165 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	YCR041W	P37265	110 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	YBL029W	P38201	376 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	IES5	P40060	125 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	LAM5	P43560	674 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	SSN8	P47821	323 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	VID30	P53076	958 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	MUM3	Q08750	479 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	RLM1	Q12224	676 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	YPT6	Q99260	215 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	SWR1	Q05471	1514 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	MRS6	P32864	603 aa	Known RBP	2.61	□□□□□ -1.99
SHE9	YDR393W	NGL3	Q03210	505 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	SSP2	Q08646	371 aa		2.61	□□□□□ -1.99
SHE9	YDR393W	KOG1	P38873	1557 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	SPA2	P23201	1466 aa	Known RBP	2.6	□□□□□ -1.99
SHE9	YDR393W	TIP1	P27654	210 aa	Predicted RBP	2.6	□□□□□ -1.99
SHE9	YDR393W	POP5	P28005	173 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	NPL6	P32832	435 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	TCD2	P36101	447 aa	Known RBP	2.6	□□□□□ -1.99
SHE9	YDR393W	SEO1	P39709	593 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	VHS1	Q03785	461 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	SOV1	Q04748	898 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	VPS38	Q05919	439 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	YEH1	Q07804	573 aa		2.6	□□□□□ -1.99
SHE9	YDR393W	CYC3	P06182	269 aa		2.59	□□□□□ -2
SHE9	YDR393W	KAR9	P32526	644 aa		2.59	□□□□□ -2
SHE9	YDR393W	AIM10	P39965	576 aa	Known RBP	2.59	□□□□□ -2
SHE9	YDR393W	TPM2	P40414	161 aa		2.59	□□□□□ -2
SHE9	YDR393W	CHS6	P40955	746 aa		2.59	□□□□□ -2
SHE9	YDR393W	YJR008W	P47085	338 aa		2.59	□□□□□ -2
SHE9	YDR393W	VMS1	Q04311	632 aa	Known RBP	2.59	□□□□□ -2
SHE9	YDR393W	YPQ1	Q12010	308 aa		2.59	□□□□□ -2
SHE9	YDR393W	YPS3	Q12303	508 aa		2.59	□□□□□ -2
SHE9	YDR393W	RRD2	Q12461	358 aa		2.59	□□□□□ -2
SHE9	YDR393W	ITR1	P30605	584 aa		2.58	□□□□□ -2
SHE9	YDR393W	YMR181C	Q03231	154 aa		2.58	□□□□□ -2
SHE9	YDR393W	FIN1	Q03898	291 aa		2.58	□□□□□ -2
SHE9	YDR393W	MRD1	Q06106	887 aa	Known RBP	2.58	□□□□□ -2
SHE9	YDR393W	PKH2	Q12236	1081 aa	Known RBP	2.58	□□□□□ -2
SHE9	YDR393W	NOP58	Q12499	511 aa	Known RBP	2.58	□□□□□ -2
SHE9	YDR393W	PRD1	P25375	712 aa		2.57	□□□□□ -2
SHE9	YDR393W	CHK1	P38147	527 aa		2.57	□□□□□ -2
SHE9	YDR393W	LYS14	P40971	790 aa		2.57	□□□□□ -2
SHE9	YDR393W	OCA1	P50946	238 aa	Predicted RBP	2.57	□□□□□ -2
SHE9	YDR393W	YIP1	P53039	248 aa		2.57	□□□□□ -2
SHE9	YDR393W	ECM11	Q04110	302 aa		2.57	□□□□□ -2
SHE9	YDR393W	YBR126W-A	Q8TGU7	68 aa		2.57	□□□□□ -2
SHE9	YDR393W	CSE2	P33308	149 aa		2.56	□□□□□ -2
SHE9	YDR393W	CBP4	P37267	147 aa		2.56	□□□□□ -2
SHE9	YDR393W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	2.56	□□□□□ -2	not detected
SHE9	YDR393W	PCP1	P53259	346 aa		2.56	□□□□□ -2
SHE9	YDR393W	YDR239C	Q03780	787 aa		2.56	□□□□□ -2
SHE9	YDR393W	ATG16	Q03818	150 aa		2.56	□□□□□ -2
SHE9	YDR393W	PDS5	Q04264	1277 aa		2.56	□□□□□ -2
SHE9	YDR393W	YPR091C	Q06833	770 aa		2.56	□□□□□ -2
SHE9	YDR393W	TIM18	Q08749	192 aa		2.56	□□□□□ -2
SHE9	YDR393W	RFM1	Q12192	310 aa		2.56	□□□□□ -2
SHE9	YDR393W	SNX3	Q08826	162 aa	Known RBP	2.55	□□□□□ -2
SHE9	YDR393W	YPR022C	Q12139	1133 aa		2.55	□□□□□ -2
SHE9	YDR393W	AHC1	Q12433	566 aa		2.55	□□□□□ -2
SHE9	YDR393W	SLY1	P22213	666 aa		2.54	□□□□□ -2
SHE9	YDR393W	MRPS9	P38120	278 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms