Protein–RNA interactions for Protein: P47821

SSN8, RNA polymerase II holoenzyme cyclin-like subunit, yeastyeast

Predictions only

Length 323 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSN8P47821 NSR1YGR159C 1245 nt17.43■□□□□ 0.38
SSN8P47821 YML009W-BYML009W-B 477 nt17.36■□□□□ 0.37
SSN8P47821 NOP1YDL014W 984 nt16.82■□□□□ 0.28
SSN8P47821 MDJ1YFL016C 1536 nt15.63■□□□□ 0.09
SSN8P47821 YKL036CYKL036C 393 nt15.33■□□□□ 0.04
SSN8P47821 SRX1YKL086W 384 nt14.68□□□□□ -0.06
SSN8P47821 Q0297Q0297 156 nt14.65□□□□□ -0.06
SSN8P47821 SSA3YBL075C 1950 nt14.55□□□□□ -0.08
SSN8P47821 YJL027CYJL027C 417 nt14.44□□□□□ -0.1
SSN8P47821 YCR051WYCR051W 669 nt13.91□□□□□ -0.18
SSN8P47821 SCS3YGL126W 1143 nt13.83□□□□□ -0.2
SSN8P47821 DBP2YNL112W 1641 nt13.74□□□□□ -0.21
SSN8P47821 YBR190WYBR190W 312 nt13.41□□□□□ -0.26
SSN8P47821 TRN1tP(UGG)A 72 nt13.38□□□□□ -0.27
SSN8P47821 SUF9tP(UGG)F 72 nt13.38□□□□□ -0.27
SSN8P47821 SUF8tP(UGG)H 72 nt13.38□□□□□ -0.27
SSN8P47821 tP(UGG)LtP(UGG)L 72 nt13.38□□□□□ -0.27
SSN8P47821 SUF7tP(UGG)M 72 nt13.38□□□□□ -0.27
SSN8P47821 tP(UGG)N1tP(UGG)N1 72 nt13.38□□□□□ -0.27
SSN8P47821 tP(UGG)N2tP(UGG)N2 72 nt13.38□□□□□ -0.27
SSN8P47821 tP(UGG)O1tP(UGG)O1 72 nt13.38□□□□□ -0.27
SSN8P47821 SUF11tP(UGG)O2 72 nt13.38□□□□□ -0.27
SSN8P47821 YOL085CYOL085C 342 nt13.27□□□□□ -0.29
SSN8P47821 CCC1YLR220W 969 nt13.24□□□□□ -0.29
SSN8P47821 RPP1BYDL130W 321 nt13.14□□□□□ -0.31
SSN8P47821 RTC3YHR087W 336 nt13.09□□□□□ -0.31
SSN8P47821 PKP1YIL042C 1185 nt13.07□□□□□ -0.32
SSN8P47821 RVS167YDR388W 1449 nt12.93□□□□□ -0.34
SSN8P47821 SCJ1YMR214W 1134 nt12.78□□□□□ -0.36
SSN8P47821 tP(UGG)O3tP(UGG)O3 72 nt12.6□□□□□ -0.39
SSN8P47821 PET122YER153C 765 nt12.56□□□□□ -0.4
SSN8P47821 SHR5YOL110W 714 nt12.42□□□□□ -0.42
SSN8P47821 SCR1SCR1 522 nt12.41□□□□□ -0.42
SSN8P47821 PAC11YDR488C 1602 nt12.4□□□□□ -0.42
SSN8P47821 PUT4YOR348C 1884 nt12.4□□□□□ -0.42
SSN8P47821 NVJ2YPR091C 2313 nt12.37□□□□□ -0.43
SSN8P47821 ATS1YAL020C 1002 nt12.31□□□□□ -0.44
SSN8P47821 FPS1YLL043W 2010 nt12.22□□□□□ -0.45
SSN8P47821 SSA4YER103W 1929 nt12.21□□□□□ -0.46
SSN8P47821 YDJ1YNL064C 1230 nt12.2□□□□□ -0.46
SSN8P47821 URN1YPR152C 1398 nt12.18□□□□□ -0.46
SSN8P47821 RRN5YLR141W 1092 nt12.18□□□□□ -0.46
SSN8P47821 DEP1YAL013W 1218 nt12.11□□□□□ -0.47
SSN8P47821 OPI9YLR338W 858 nt12.05□□□□□ -0.48
SSN8P47821 SPT5YML010W 3192 nt12.01□□□□□ -0.49
SSN8P47821 ARE1YCR048W 1833 nt12□□□□□ -0.49
SSN8P47821 SAH1YER043C 1350 nt12□□□□□ -0.49
SSN8P47821 RPN10YHR200W 807 nt11.99□□□□□ -0.49
SSN8P47821 BDF1YLR399C 2061 nt11.95□□□□□ -0.5
SSN8P47821 YER088W-BYER088W-B 147 nt11.94□□□□□ -0.5
SSN8P47821 GAR1YHR089C 618 nt11.94□□□□□ -0.5
SSN8P47821 YNL208WYNL208W 600 nt11.92□□□□□ -0.5
SSN8P47821 SSA1YAL005C 1929 nt11.9□□□□□ -0.5
SSN8P47821 RSB1YOR049C 1065 nt11.89□□□□□ -0.51
SSN8P47821 POA1YBR022W 534 nt11.89□□□□□ -0.51
SSN8P47821 YHR049C-AYHR049C-A 297 nt11.87□□□□□ -0.51
SSN8P47821 BSC6YOL137W 1494 nt11.79□□□□□ -0.52
SSN8P47821 TAT1YBR069C 1860 nt11.74□□□□□ -0.53
SSN8P47821 PUN1YLR414C 792 nt11.72□□□□□ -0.53
SSN8P47821 YJR018WYJR018W 363 nt11.62□□□□□ -0.55
SSN8P47821 BUD23YCR047C 828 nt11.58□□□□□ -0.56
SSN8P47821 PTC2YER089C 1395 nt11.57□□□□□ -0.56
SSN8P47821 TIR1YER011W 765 nt11.56□□□□□ -0.56
SSN8P47821 NAB2YGL122C 1578 nt11.46□□□□□ -0.57
SSN8P47821 PST2YDR032C 597 nt11.43□□□□□ -0.58
SSN8P47821 UME6YDR207C 2511 nt11.42□□□□□ -0.58
SSN8P47821 YJR120WYJR120W 351 nt11.36□□□□□ -0.59
SSN8P47821 RPP2BYDR382W 333 nt11.35□□□□□ -0.59
SSN8P47821 DAL1YIR027C 1383 nt11.28□□□□□ -0.6
SSN8P47821 FIS1YIL065C 468 nt11.27□□□□□ -0.61
SSN8P47821 FPR4YLR449W 1179 nt11.25□□□□□ -0.61
SSN8P47821 INM2YDR287W 879 nt11.24□□□□□ -0.61
SSN8P47821 SRB2YHR041C 633 nt11.18□□□□□ -0.62
SSN8P47821 MEP2YNL142W 1500 nt11.18□□□□□ -0.62
SSN8P47821 PHO4YFR034C 939 nt11.17□□□□□ -0.62
SSN8P47821 YBL100CYBL100C 315 nt11.09□□□□□ -0.63
SSN8P47821 BDH2YAL061W 1254 nt11.07□□□□□ -0.64
SSN8P47821 SHU1YHL006C 453 nt11.01□□□□□ -0.65
SSN8P47821 YPS1YLR120C 1710 nt11.01□□□□□ -0.65
SSN8P47821 WWM1YFL010C 636 nt11□□□□□ -0.65
SSN8P47821 Q0182Q0182 405 nt11□□□□□ -0.65
SSN8P47821 FUN26YAL022C 1554 nt10.94□□□□□ -0.66
SSN8P47821 DCW1YKL046C 1350 nt10.93□□□□□ -0.66
SSN8P47821 YDR095CYDR095C 411 nt10.92□□□□□ -0.66
SSN8P47821 YGR021WYGR021W 873 nt10.92□□□□□ -0.66
SSN8P47821 YHR165W-AYHR165W-A 312 nt10.92□□□□□ -0.66
SSN8P47821 GUT2YIL155C 1950 nt10.92□□□□□ -0.66
SSN8P47821 TRM9YML014W 840 nt10.91□□□□□ -0.66
SSN8P47821 LSM3YLR438C-A 270 nt10.9□□□□□ -0.66
SSN8P47821 YAL037C-BYAL037C-B 975 nt10.89□□□□□ -0.67
SSN8P47821 YKL097CYKL097C 411 nt10.89□□□□□ -0.67
SSN8P47821 YBR220CYBR220C 1683 nt10.89□□□□□ -0.67
SSN8P47821 YJL225CYJL225C 5277 nt10.86□□□□□ -0.67
SSN8P47821 YFL021C-AYFL021C-A 855 nt10.86□□□□□ -0.67
SSN8P47821 ALF1YNL148C 765 nt10.85□□□□□ -0.67
SSN8P47821 HOM6YJR139C 1080 nt10.84□□□□□ -0.67
SSN8P47821 YMR090WYMR090W 684 nt10.8□□□□□ -0.68
SSN8P47821 EMI2YDR516C 1503 nt10.79□□□□□ -0.68
SSN8P47821 MCH5YOR306C 1566 nt10.79□□□□□ -0.68
SSN8P47821 CCT6YDR188W 1641 nt10.79□□□□□ -0.68
Retrieved 100 of 7,029 protein–RNA pairs in 14 ms