RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeastyeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHE9YDR393W MTC1P47018 478 aaKnown RBP18.14■□□□□ 0.49
SHE9YDR393W DRS1P32892 752 aaKnown RBP16.71■□□□□ 0.27
SHE9YDR393W FAP1P53971 965 aa16.53■□□□□ 0.24
SHE9YDR393W PRY3P47033 881 aa15.56■□□□□ 0.08
SHE9YDR393W PRI1P10363 409 aa15.42■□□□□ 0.06
SHE9YDR393W AAD16Q02895 342 aa15.33■□□□□ 0.04
SHE9YDR393W ISW2Q08773 1120 aa15.06■□□□□ 0
SHE9YDR393W RPG1P38249 964 aaKnown RBP14.92□□□□□ -0.02
SHE9YDR393W YCK3P39962 524 aa14.75□□□□□ -0.05
SHE9YDR393W DIP2Q12220 943 aaPredicted RBP14.73□□□□□ -0.05
SHE9YDR393W HAA1Q12753 694 aaKnown RBP14.59□□□□□ -0.07
SHE9YDR393W TSR3Q12094 313 aaKnown RBP14.55□□□□□ -0.08
SHE9YDR393W RSE1Q04693 1361 aaKnown RBP14.3□□□□□ -0.12
SHE9YDR393W AVT3P36062 692 aa14.17□□□□□ -0.14
SHE9YDR393W MRPL32P25348 183 aa13.96□□□□□ -0.18
SHE9YDR393W RPL17AP05740 184 aaKnown RBP13.86□□□□□ -0.19
SHE9YDR393W RPL17BP46990 184 aaKnown RBP13.86□□□□□ -0.19
SHE9YDR393W REB1P21538 810 aa13.81□□□□□ -0.2
SHE9YDR393W BFR2Q06631 534 aaKnown RBP13.79□□□□□ -0.2
SHE9YDR393W YGL015CP33199 130 aa13.45□□□□□ -0.26
SHE9YDR393W SPT21P35209 758 aa13.3□□□□□ -0.28
SHE9YDR393W CDC27P38042 758 aa13.27□□□□□ -0.29
SHE9YDR393W YKR023WP36119 530 aaKnown RBP13.18□□□□□ -0.3
SHE9YDR393W UBP10P53874 792 aaPredicted RBP12.91□□□□□ -0.34
SHE9YDR393W HOP09932 586 aa12.9□□□□□ -0.34
SHE9YDR393W TFC8Q12308 588 aa12.9□□□□□ -0.34
SHE9YDR393W MAP2P38174 421 aaKnown RBP12.87□□□□□ -0.35
SHE9YDR393W DCD1P06773 312 aa12.85□□□□□ -0.35
SHE9YDR393W RIM101P33400 625 aa12.76□□□□□ -0.37
SHE9YDR393W SCY1P53009 804 aa12.56□□□□□ -0.4
SHE9YDR393W BCH2P36122 765 aa12.47□□□□□ -0.41
SHE9YDR393W BUD31P25337 157 aaPredicted RBP12.44□□□□□ -0.42
SHE9YDR393W SLX5P32828 619 aaKnown RBP12.41□□□□□ -0.42
SHE9YDR393W TIF4632P39936 914 aaKnown RBP12.35□□□□□ -0.43
SHE9YDR393W OXP1P28273 1286 aa12.33□□□□□ -0.44
SHE9YDR393W TGL3P40308 642 aa12.31□□□□□ -0.44
SHE9YDR393W EPS1P40557 701 aa12.15□□□□□ -0.46
SHE9YDR393W PTP3P40048 928 aa12.12□□□□□ -0.47
SHE9YDR393W BDF1P35817 686 aa12.1□□□□□ -0.47
SHE9YDR393W YIL055CP40523 627 aaKnown RBP12.1□□□□□ -0.47
SHE9YDR393W UBP9P39967 754 aa11.97□□□□□ -0.49
SHE9YDR393W TFA1P36100 482 aa11.96□□□□□ -0.49
SHE9YDR393W RSM7P47150 247 aa11.94□□□□□ -0.5
SHE9YDR393W YAH1Q12184 172 aaKnown RBP11.91□□□□□ -0.5
SHE9YDR393W BBC1P47068 1157 aa11.87□□□□□ -0.51
SHE9YDR393W AI2P03876 854 aa11.86□□□□□ -0.51
SHE9YDR393W MST1P07236 462 aa11.79□□□□□ -0.52
SHE9YDR393W SIS1P25294 352 aaKnown RBP11.79□□□□□ -0.52
SHE9YDR393W NSR1P27476 414 aaKnown RBP RIP-Chip data11.74□□□□□ -0.53not detected
SHE9YDR393W YLR271WQ06152 274 aa11.72□□□□□ -0.53
SHE9YDR393W YOR238WQ08634 303 aa11.72□□□□□ -0.53
SHE9YDR393W YAP5P40574 245 aa11.63□□□□□ -0.55
SHE9YDR393W YBL029C-AQ3E756 94 aa11.63□□□□□ -0.55
SHE9YDR393W PSD2P53037 1138 aaKnown RBP11.59□□□□□ -0.55
SHE9YDR393W SSP1P38871 571 aa11.5□□□□□ -0.57
SHE9YDR393W VNX1P42839 908 aa11.5□□□□□ -0.57
SHE9YDR393W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.44□□□□□ -0.58not detected
SHE9YDR393W MRM1P25270 412 aa11.42□□□□□ -0.58
SHE9YDR393W WSC3Q12215 556 aa11.41□□□□□ -0.58
SHE9YDR393W SPP1Q03012 353 aa11.39□□□□□ -0.59
SHE9YDR393W GTT3P39996 337 aa11.35□□□□□ -0.59
SHE9YDR393W PIB1Q06651 286 aa11.32□□□□□ -0.6
SHE9YDR393W CST9Q06032 482 aa11.3□□□□□ -0.6
SHE9YDR393W TIF11P38912 153 aaKnown RBP11.28□□□□□ -0.6
SHE9YDR393W MGA2P40578 1113 aa11.26□□□□□ -0.61
SHE9YDR393W VPS29P38759 282 aa11.18□□□□□ -0.62
SHE9YDR393W FKH1P40466 484 aa11.16□□□□□ -0.62
SHE9YDR393W YMR1P47147 688 aaKnown RBP RIP-Chip data11.16□□□□□ -0.62not detected
SHE9YDR393W RTG3P38165 486 aa11.16□□□□□ -0.62
SHE9YDR393W AIR2Q12476 344 aaKnown RBP11.16□□□□□ -0.62
SHE9YDR393W DBP1P24784 617 aaKnown RBP11.12□□□□□ -0.63
SHE9YDR393W ULI1P43604 169 aa11.12□□□□□ -0.63
SHE9YDR393W IOC2Q12072 812 aa11.11□□□□□ -0.63
SHE9YDR393W LDB19Q12502 818 aa11.11□□□□□ -0.63
SHE9YDR393W STS1P38637 319 aa11.09□□□□□ -0.63
SHE9YDR393W YFR006WP43590 535 aa11.09□□□□□ -0.63
SHE9YDR393W MSB4Q12317 492 aa11.09□□□□□ -0.63
SHE9YDR393W RCR1P38212 213 aa11.07□□□□□ -0.64
SHE9YDR393W YOL036WQ08206 761 aa11.06□□□□□ -0.64
SHE9YDR393W VMA1P17255 1071 aaKnown RBP11.03□□□□□ -0.64
SHE9YDR393W SET4P42948 560 aa11.03□□□□□ -0.64
SHE9YDR393W EAP1P36041 632 aaKnown RBP11.02□□□□□ -0.65
SHE9YDR393W YJL171CP46992 396 aa11.01□□□□□ -0.65
SHE9YDR393W SAM3Q08986 587 aa10.97□□□□□ -0.65
SHE9YDR393W TRP5P00931 707 aaKnown RBP10.95□□□□□ -0.66
SHE9YDR393W RTG1P32607 177 aa10.9□□□□□ -0.67
SHE9YDR393W BMT6Q12291 365 aa10.89□□□□□ -0.67
SHE9YDR393W YNL035CP53962 389 aaKnown RBP10.84□□□□□ -0.67
SHE9YDR393W NCR1Q12200 1170 aa10.81□□□□□ -0.68
SHE9YDR393W SEC61P32915 480 aa10.79□□□□□ -0.68
SHE9YDR393W GYP5Q12344 894 aa10.78□□□□□ -0.68
SHE9YDR393W ABP1P15891 592 aaKnown RBP10.77□□□□□ -0.69
SHE9YDR393W DAN4P47179 1161 aa10.73□□□□□ -0.69
SHE9YDR393W HTA1P04911 132 aaKnown RBP10.7□□□□□ -0.7
SHE9YDR393W HTA2P04912 132 aa10.7□□□□□ -0.7
SHE9YDR393W DCW1P36091 449 aa10.7□□□□□ -0.7
SHE9YDR393W JIP4Q03361 876 aa10.7□□□□□ -0.7
SHE9YDR393W RAM2P29703 316 aa10.69□□□□□ -0.7
SHE9YDR393W MAK11P20484 414 aaKnown RBP10.66□□□□□ -0.7
SHE9YDR393W TFG1P41895 735 aaPredicted RBP10.65□□□□□ -0.71
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms