RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C TY1A-MR2P0CX69 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-JR2P47099 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-DR1Q03856 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-ML1Q04706 440 aaKnown RBP5.04□□□□□ -1.6
PCF11YDR228C TY1A-BRQ12217 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-NL2Q12470 440 aa5.04□□□□□ -1.6
PCF11YDR228C TY1A-GR2Q12485 440 aa5.04□□□□□ -1.6
PCF11YDR228C SPB4P25808 606 aaPredicted RBP5.03□□□□□ -1.6
PCF11YDR228C CLB5P30283 435 aa5.02□□□□□ -1.61
PCF11YDR228C RAS1P01119 309 aa5.01□□□□□ -1.61
PCF11YDR228C DIT2P21595 489 aa5.01□□□□□ -1.61
PCF11YDR228C SRC1Q03707 834 aa5.01□□□□□ -1.61
PCF11YDR228C AMS1P22855 1083 aa5□□□□□ -1.61
PCF11YDR228C NPL4P33755 580 aa5□□□□□ -1.61
PCF11YDR228C MRF1P30775 413 aaPredicted RBP4.99□□□□□ -1.61
PCF11YDR228C SIT4P20604 311 aa4.98□□□□□ -1.61
PCF11YDR228C GCD11P32481 527 aaKnown RBP4.98□□□□□ -1.61
PCF11YDR228C ERF2Q06551 359 aa4.97□□□□□ -1.61
PCF11YDR228C TEA1P47988 759 aa4.96□□□□□ -1.61
PCF11YDR228C YEL077CQ3E7X8 1277 aa4.96□□□□□ -1.61
PCF11YDR228C KEX2P13134 814 aa4.96□□□□□ -1.62
PCF11YDR228C RTF1P53064 558 aa4.96□□□□□ -1.62
PCF11YDR228C NIS1P53939 407 aa4.94□□□□□ -1.62
PCF11YDR228C AGE1Q04412 482 aa4.94□□□□□ -1.62
PCF11YDR228C YNR021WP53723 404 aaKnown RBP4.93□□□□□ -1.62
PCF11YDR228C ERG12P07277 443 aa4.92□□□□□ -1.62
PCF11YDR228C SPT16P32558 1035 aaKnown RBP4.92□□□□□ -1.62
PCF11YDR228C CST6P40535 587 aa4.92□□□□□ -1.62
PCF11YDR228C RRN7P40992 514 aa4.92□□□□□ -1.62
PCF11YDR228C YNL115CP53925 644 aa4.92□□□□□ -1.62
PCF11YDR228C LAM6Q08001 693 aa4.92□□□□□ -1.62
PCF11YDR228C MOD5P07884 428 aa4.91□□□□□ -1.62
PCF11YDR228C PAT1P25644 796 aaKnown RBP4.91□□□□□ -1.62
PCF11YDR228C PAC1P39946 494 aaKnown RBP4.9□□□□□ -1.62
PCF11YDR228C TUB4P53378 473 aa4.9□□□□□ -1.62
PCF11YDR228C FPK1P53739 893 aa4.9□□□□□ -1.62
PCF11YDR228C TRK1P12685 1235 aa4.88□□□□□ -1.63
PCF11YDR228C BDP1P46678 594 aa4.88□□□□□ -1.63
PCF11YDR228C AIM7Q12156 149 aa4.88□□□□□ -1.63
PCF11YDR228C ATF2P53296 535 aa4.87□□□□□ -1.63
PCF11YDR228C HST2P53686 357 aa4.87□□□□□ -1.63
PCF11YDR228C GLC3P32775 704 aa4.86□□□□□ -1.63
PCF11YDR228C CLA4P48562 842 aa4.86□□□□□ -1.63
PCF11YDR228C LEU3P08638 886 aa4.86□□□□□ -1.63
PCF11YDR228C TPD3P31383 635 aa4.86□□□□□ -1.63
PCF11YDR228C SLY41P22215 453 aa4.84□□□□□ -1.63
PCF11YDR228C AIR1P40507 360 aaKnown RBP4.84□□□□□ -1.63
PCF11YDR228C FRK1Q03002 865 aaPredicted RBP4.84□□□□□ -1.63
PCF11YDR228C HED1Q03937 162 aa4.84□□□□□ -1.63
PCF11YDR228C YMR196WQ04336 1088 aa4.83□□□□□ -1.64
PCF11YDR228C SCJ1P25303 377 aa4.82□□□□□ -1.64
PCF11YDR228C BUB1P41695 1021 aaKnown RBP RIP-Chip data4.82□□□□□ -1.64not detected
PCF11YDR228C CDC4P07834 779 aa4.81□□□□□ -1.64
PCF11YDR228C GLN1P32288 370 aaKnown RBP4.81□□□□□ -1.64
PCF11YDR228C PUS6P53294 404 aa4.81□□□□□ -1.64
PCF11YDR228C MMP1Q12372 583 aa4.81□□□□□ -1.64
PCF11YDR228C PDC1P06169 563 aaKnown RBP4.81□□□□□ -1.64
PCF11YDR228C HXT10P43581 546 aa4.81□□□□□ -1.64
PCF11YDR228C KTR1P27810 393 aaKnown RBP4.8□□□□□ -1.64
PCF11YDR228C RRD1P40454 393 aaKnown RBP4.8□□□□□ -1.64
PCF11YDR228C KXD1P53158 218 aa4.8□□□□□ -1.64
PCF11YDR228C YPR097WQ06839 1073 aa4.8□□□□□ -1.64
PCF11YDR228C RSC30P38781 883 aa4.79□□□□□ -1.64
PCF11YDR228C RPA14P50106 137 aa4.79□□□□□ -1.64
PCF11YDR228C TRM1P15565 570 aaKnown RBP4.79□□□□□ -1.64
PCF11YDR228C ESS1P22696 170 aa4.78□□□□□ -1.64
PCF11YDR228C PUS5Q06244 254 aa4.77□□□□□ -1.65
PCF11YDR228C TYW1Q08960 810 aaKnown RBP4.77□□□□□ -1.65
PCF11YDR228C MET32Q12041 191 aa4.77□□□□□ -1.65
PCF11YDR228C YDL206WQ12424 762 aa4.77□□□□□ -1.65
PCF11YDR228C YJU3P28321 313 aa4.77□□□□□ -1.65
PCF11YDR228C ALR1Q08269 859 aa4.77□□□□□ -1.65
PCF11YDR228C BRE2P43132 505 aa4.76□□□□□ -1.65
PCF11YDR228C CSN12P47130 423 aa4.76□□□□□ -1.65
PCF11YDR228C TBF1Q02457 562 aa4.75□□□□□ -1.65
PCF11YDR228C RPN1P38764 993 aaKnown RBP4.75□□□□□ -1.65
PCF11YDR228C KIN1P13185 1064 aa4.74□□□□□ -1.65
PCF11YDR228C AFT1P22149 690 aa4.74□□□□□ -1.65
PCF11YDR228C GCR2Q01722 534 aa4.73□□□□□ -1.65
PCF11YDR228C SYH1Q02875 849 aaKnown RBP4.73□□□□□ -1.65
PCF11YDR228C ASH1P34233 588 aa4.73□□□□□ -1.65
PCF11YDR228C PKH3Q03306 898 aaPredicted RBP4.71□□□□□ -1.66
PCF11YDR228C VAC17P25591 423 aa4.71□□□□□ -1.66
PCF11YDR228C MRT4P33201 236 aaKnown RBP4.7□□□□□ -1.66
PCF11YDR228C SSA2P10592 639 aaKnown RBP4.69□□□□□ -1.66
PCF11YDR228C MSB3P48566 633 aaPredicted RBP4.69□□□□□ -1.66
PCF11YDR228C RAD59Q12223 238 aa4.69□□□□□ -1.66
PCF11YDR228C ARG8P18544 423 aa4.69□□□□□ -1.66
PCF11YDR228C HST3P53687 447 aa4.68□□□□□ -1.66
PCF11YDR228C KIP2P28743 706 aa4.67□□□□□ -1.66
PCF11YDR228C MET22P32179 357 aa4.67□□□□□ -1.66
PCF11YDR228C IXR1P33417 597 aa4.67□□□□□ -1.66
PCF11YDR228C GUA1P38625 525 aaKnown RBP4.67□□□□□ -1.66
PCF11YDR228C RGA1P39083 1007 aa4.66□□□□□ -1.66
PCF11YDR228C ENV9Q08651 330 aa4.66□□□□□ -1.66
PCF11YDR228C RTT106P40161 455 aa4.66□□□□□ -1.66
PCF11YDR228C FIG4P42837 879 aa4.66□□□□□ -1.66
PCF11YDR228C YJR115WP47152 169 aa4.66□□□□□ -1.66
PCF11YDR228C HPC2Q01448 625 aa4.64□□□□□ -1.67
PCF11YDR228C YPR084WQ06821 456 aa4.64□□□□□ -1.67
Retrieved 100 of 5,963 RNA–protein pairs in 40.2 ms