RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 KDM5BQ9UGL1 1544 aa18.68■□□□□ 0.58
PCF11-204ENST00000530660 EIF4G2P78344 907 aaKnown RBP eCLIP18.68■□□□□ 0.58
PCF11-204ENST00000530660 UACAQ9BZF9 1416 aa18.67■□□□□ 0.58
PCF11-204ENST00000530660 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
PCF11-204ENST00000530660 POGKQ9P215 609 aa18.66■□□□□ 0.58
PCF11-204ENST00000530660 PTPRKQ15262 1439 aa18.66■□□□□ 0.58
PCF11-204ENST00000530660 ARXQ96QS3 562 aa18.66■□□□□ 0.58
PCF11-204ENST00000530660 AQRO60306 1485 aaKnown RBP eCLIP18.65■□□□□ 0.585e-6■■■■■ 28
PCF11-204ENST00000530660 PNNQ9H307 717 aaKnown RBP18.64■□□□□ 0.57
PCF11-204ENST00000530660 RRP1P56182 461 aaKnown RBP18.64■□□□□ 0.57
PCF11-204ENST00000530660 CCDC7Q96M83 1385 aa18.63■□□□□ 0.57
PCF11-204ENST00000530660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.63■□□□□ 0.571e-25■■□□□ 13.2
PCF11-204ENST00000530660 FHOD3Q2V2M9 1422 aa18.62■□□□□ 0.57
PCF11-204ENST00000530660 FGD6Q6ZV73 1430 aa18.62■□□□□ 0.57
PCF11-204ENST00000530660 HFM1A2PYH4 1435 aa18.61■□□□□ 0.57
PCF11-204ENST00000530660 ARID4BQ4LE39 1312 aaPredicted RBP18.61■□□□□ 0.57
PCF11-204ENST00000530660 RBM10P98175 930 aaKnown RBP18.59■□□□□ 0.57
PCF11-204ENST00000530660 PTPN23Q9H3S7 1636 aa18.59■□□□□ 0.57
PCF11-204ENST00000530660 NAIPQ13075 1403 aa18.57■□□□□ 0.56
PCF11-204ENST00000530660 NCOA1Q15788 1441 aa18.55■□□□□ 0.56
PCF11-204ENST00000530660 FYCO1Q9BQS8 1478 aa18.53■□□□□ 0.56
PCF11-204ENST00000530660 RCAN3Q9UKA8 241 aa18.53■□□□□ 0.56
PCF11-204ENST00000530660 KIF7Q2M1P5 1343 aa18.52■□□□□ 0.56
PCF11-204ENST00000530660 CFTRP13569 1480 aa18.52■□□□□ 0.56
PCF11-204ENST00000530660 CLCN1P35523 988 aa18.52■□□□□ 0.55
PCF11-204ENST00000530660 PLIN1O60240 522 aa18.51■□□□□ 0.55
PCF11-204ENST00000530660 RRP7BPQ9NSQ0 103 aa18.51■□□□□ 0.55
PCF11-204ENST00000530660 CASKIN1Q8WXD9 1431 aa18.51■□□□□ 0.55
PCF11-204ENST00000530660 FMN1Q68DA7 1419 aa18.5■□□□□ 0.55
PCF11-204ENST00000530660 FGD5Q6ZNL6 1462 aa18.5■□□□□ 0.55
PCF11-204ENST00000530660 L3MBTL2Q969R5 705 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 POLR3GLQ9BT43 218 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 MTUS2Q5JR59 1369 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 AAMPQ13685 434 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 PANK2Q9BZ23 570 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
PCF11-204ENST00000530660 L1TD1Q5T7N2 865 aaKnown RBP18.48■□□□□ 0.55
PCF11-204ENST00000530660 PNISRQ8TF01 805 aaKnown RBP18.48■□□□□ 0.55
PCF11-204ENST00000530660 XRCC6P12956 609 aaKnown RBP eCLIP18.47■□□□□ 0.552e-13■□□□□ 8.8
PCF11-204ENST00000530660 FOXD1Q16676 465 aa18.46■□□□□ 0.55
PCF11-204ENST00000530660 DENND4BO75064 1496 aaPredicted RBP18.46■□□□□ 0.55
PCF11-204ENST00000530660 RGS3P49796 1198 aa18.44■□□□□ 0.54
PCF11-204ENST00000530660 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
PCF11-204ENST00000530660 C8orf34Q49A92 452 aa18.44■□□□□ 0.54
PCF11-204ENST00000530660 CRBNQ96SW2 442 aa18.43■□□□□ 0.54
PCF11-204ENST00000530660 NBPF8Q3BBV2 869 aa18.42■□□□□ 0.54
PCF11-204ENST00000530660 PRDM4Q9UKN5 801 aa18.42■□□□□ 0.54
PCF11-204ENST00000530660 FGD1P98174 961 aa18.42■□□□□ 0.54
PCF11-204ENST00000530660 SLKQ9H2G2 1235 aaPredicted RBP18.41■□□□□ 0.54
PCF11-204ENST00000530660 FAM161AQ3B820 660 aa18.41■□□□□ 0.54
PCF11-204ENST00000530660 DHX29Q7Z478 1369 aaKnown RBP18.4■□□□□ 0.54
PCF11-204ENST00000530660 HMGXB3Q12766 1538 aa18.4■□□□□ 0.54
PCF11-204ENST00000530660 MYOM3Q5VTT5 1437 aa18.4■□□□□ 0.54
PCF11-204ENST00000530660 GZF1Q9H116 711 aaPredicted RBP18.39■□□□□ 0.53
PCF11-204ENST00000530660 MPHOSPH9Q99550 1183 aa18.38■□□□□ 0.53
PCF11-204ENST00000530660 CDCA7LQ96GN5 454 aa18.38■□□□□ 0.53
PCF11-204ENST00000530660 GOLGA6L3A6NEY3 463 aa18.36■□□□□ 0.53
PCF11-204ENST00000530660 EFCAB5A4FU69 1503 aa18.36■□□□□ 0.53
PCF11-204ENST00000530660 PDCL3Q9H2J4 239 aa18.36■□□□□ 0.53
PCF11-204ENST00000530660 SNAPC4Q5SXM2 1469 aa18.36■□□□□ 0.53
PCF11-204ENST00000530660 KDM6BO15054 1643 aa18.35■□□□□ 0.53
PCF11-204ENST00000530660 ERBB4Q15303 1308 aa18.35■□□□□ 0.53
PCF11-204ENST00000530660 C20orf194Q5TEA3 1177 aa18.34■□□□□ 0.53
PCF11-204ENST00000530660 CALD1Q05682 793 aaKnown RBP18.34■□□□□ 0.53
PCF11-204ENST00000530660 HECW1Q76N89 1606 aa18.33■□□□□ 0.52
PCF11-204ENST00000530660 SPATA31E1Q6ZUB1 1445 aa18.31■□□□□ 0.52
PCF11-204ENST00000530660 KTN1Q86UP2 1357 aaKnown RBP18.31■□□□□ 0.52
PCF11-204ENST00000530660 FSD2A1L4K1 749 aa18.31■□□□□ 0.52
PCF11-204ENST00000530660 ESPNB1AK53 854 aa18.31■□□□□ 0.52
PCF11-204ENST00000530660 KDM2BQ8NHM5 1336 aa18.31■□□□□ 0.52
PCF11-204ENST00000530660 LRRIQ1Q96JM4 1722 aa18.3■□□□□ 0.52
PCF11-204ENST00000530660 PDE4CQ08493 712 aa18.29■□□□□ 0.52
PCF11-204ENST00000530660 ABCA5Q8WWZ7 1642 aa18.28■□□□□ 0.52
PCF11-204ENST00000530660 CENPJQ9HC77 1338 aaPredicted RBP18.28■□□□□ 0.52
PCF11-204ENST00000530660 LRPPRCP42704 1394 aaKnown RBP18.27■□□□□ 0.52
PCF11-204ENST00000530660 SUPT6HQ7KZ85 1726 aaKnown RBP18.26■□□□□ 0.51
PCF11-204ENST00000530660 RAD54L2Q9Y4B4 1467 aa18.25■□□□□ 0.51
PCF11-204ENST00000530660 GCC2Q8IWJ2 1684 aa18.25■□□□□ 0.51
PCF11-204ENST00000530660 TPM2P07951 284 aa18.25■□□□□ 0.51
PCF11-204ENST00000530660 CENPQQ7L2Z9 268 aaPredicted RBP18.25■□□□□ 0.51
PCF11-204ENST00000530660 PRDM2Q13029 1718 aa18.24■□□□□ 0.51
PCF11-204ENST00000530660 USP19O94966 1318 aa18.24■□□□□ 0.51
PCF11-204ENST00000530660 TEX14Q8IWB6 1497 aa18.24■□□□□ 0.51
PCF11-204ENST00000530660 ANKRD30BQ9BXX2 1392 aa18.23■□□□□ 0.51
PCF11-204ENST00000530660 MYH16Q9H6N6 1097 aa18.23■□□□□ 0.51
PCF11-204ENST00000530660 RPRD2Q5VT52 1461 aaKnown RBP18.23■□□□□ 0.51
PCF11-204ENST00000530660 UGGT2Q9NYU1 1516 aa18.22■□□□□ 0.51
PCF11-204ENST00000530660 SEC24BO95487 1268 aa18.22■□□□□ 0.51
PCF11-204ENST00000530660 KIAA1211Q6ZU35 1233 aa18.22■□□□□ 0.51
PCF11-204ENST00000530660 POLR1AO95602 1720 aaPredicted RBP18.22■□□□□ 0.51
PCF11-204ENST00000530660 CTTNBP2Q8WZ74 1663 aa18.22■□□□□ 0.51
PCF11-204ENST00000530660 ANTXR1Q9H6X2 564 aa18.22■□□□□ 0.51
PCF11-204ENST00000530660 GRIN2BQ13224 1484 aa18.21■□□□□ 0.51
PCF11-204ENST00000530660 MAGI3Q5TCQ9 1506 aa18.21■□□□□ 0.51
PCF11-204ENST00000530660 EHBP1L1Q8N3D4 1523 aa18.21■□□□□ 0.51
PCF11-204ENST00000530660 ZNF326Q5BKZ1 582 aaKnown RBP18.21■□□□□ 0.51
PCF11-204ENST00000530660 SPRYD3Q8NCJ5 442 aa18.21■□□□□ 0.51
PCF11-204ENST00000530660 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.5
PCF11-204ENST00000530660 ARID3AQ99856 593 aa18.2■□□□□ 0.5
PCF11-204ENST00000530660 PDE3BQ13370 1112 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms