RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 FMN1Q68DA7 1419 aa18.16■□□□□ 0.5
HDAC1-206ENST00000476391 KIF7Q2M1P5 1343 aa18.15■□□□□ 0.5
HDAC1-206ENST00000476391 SLC4A3P48751 1232 aa18.15■□□□□ 0.5
HDAC1-206ENST00000476391 NAP1L5Q96NT1 182 aaPredicted RBP18.15■□□□□ 0.5
HDAC1-206ENST00000476391 PNNQ9H307 717 aaKnown RBP18.15■□□□□ 0.5
HDAC1-206ENST00000476391 NAIPQ13075 1403 aa18.15■□□□□ 0.5
HDAC1-206ENST00000476391 CLCN1P35523 988 aa18.14■□□□□ 0.5
HDAC1-206ENST00000476391 FGD6Q6ZV73 1430 aa18.14■□□□□ 0.5
HDAC1-206ENST00000476391 PCF11O94913 1555 aaKnown RBP18.14■□□□□ 0.49
HDAC1-206ENST00000476391 AQRO60306 1485 aaKnown RBP eCLIP18.13■□□□□ 0.495e-7■■■■■ 50.9
HDAC1-206ENST00000476391 RCAN3Q9UKA8 241 aa18.13■□□□□ 0.49
HDAC1-206ENST00000476391 PNISRQ8TF01 805 aaKnown RBP18.12■□□□□ 0.49
HDAC1-206ENST00000476391 DHX29Q7Z478 1369 aaKnown RBP18.12■□□□□ 0.49
HDAC1-206ENST00000476391 SPATA31E1Q6ZUB1 1445 aa18.12■□□□□ 0.49
HDAC1-206ENST00000476391 HECW1Q76N89 1606 aa18.11■□□□□ 0.49
HDAC1-206ENST00000476391 PTPRKQ15262 1439 aa18.09■□□□□ 0.49
HDAC1-206ENST00000476391 LRPPRCP42704 1394 aaKnown RBP18.07■□□□□ 0.48
HDAC1-206ENST00000476391 FYCO1Q9BQS8 1478 aa18.07■□□□□ 0.48
HDAC1-206ENST00000476391 PDE3BQ13370 1112 aa18.06■□□□□ 0.48
HDAC1-206ENST00000476391 FAM161AQ3B820 660 aa18.06■□□□□ 0.48
HDAC1-206ENST00000476391 CENPJQ9HC77 1338 aaPredicted RBP18.05■□□□□ 0.48
HDAC1-206ENST00000476391 POGKQ9P215 609 aa18.04■□□□□ 0.48
HDAC1-206ENST00000476391 L3MBTL2Q969R5 705 aa18.04■□□□□ 0.48
HDAC1-206ENST00000476391 DENND4BO75064 1496 aaPredicted RBP18.03■□□□□ 0.48
HDAC1-206ENST00000476391 MIA2Q96PC5 1412 aa18.03■□□□□ 0.48
HDAC1-206ENST00000476391 TMC1Q8TDI8 760 aa18.03■□□□□ 0.48
HDAC1-206ENST00000476391 CUX1P39880 1505 aa18.03■□□□□ 0.48
HDAC1-206ENST00000476391 KTN1Q86UP2 1357 aaKnown RBP18.01■□□□□ 0.47
HDAC1-206ENST00000476391 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
HDAC1-206ENST00000476391 C8orf34Q49A92 452 aa18■□□□□ 0.47
HDAC1-206ENST00000476391 CASKIN1Q8WXD9 1431 aa17.99■□□□□ 0.47
HDAC1-206ENST00000476391 GCC2Q8IWJ2 1684 aa17.99■□□□□ 0.47
HDAC1-206ENST00000476391 ARID4BQ4LE39 1312 aaPredicted RBP17.99■□□□□ 0.47
HDAC1-206ENST00000476391 PDCL3Q9H2J4 239 aa17.98■□□□□ 0.47
HDAC1-206ENST00000476391 KDM2BQ8NHM5 1336 aa17.98■□□□□ 0.47
HDAC1-206ENST00000476391 BRD4O60885 1362 aaPredicted RBP17.98■□□□□ 0.47
HDAC1-206ENST00000476391 CALD1Q05682 793 aaKnown RBP17.96■□□□□ 0.47
HDAC1-206ENST00000476391 CENPQQ7L2Z9 268 aaPredicted RBP17.96■□□□□ 0.47
HDAC1-206ENST00000476391 MYOM3Q5VTT5 1437 aa17.96■□□□□ 0.47
HDAC1-206ENST00000476391 XRCC6P12956 609 aaKnown RBP eCLIP17.95■□□□□ 0.46
HDAC1-206ENST00000476391 NBPF8Q3BBV2 869 aa17.95■□□□□ 0.46
HDAC1-206ENST00000476391 SKAP1Q86WV1 359 aa17.95■□□□□ 0.46
HDAC1-206ENST00000476391 FSD2A1L4K1 749 aa17.94■□□□□ 0.46
HDAC1-206ENST00000476391 TEX14Q8IWB6 1497 aa17.94■□□□□ 0.46
HDAC1-206ENST00000476391 GOLGA6L3A6NEY3 463 aa17.94■□□□□ 0.46
HDAC1-206ENST00000476391 TPM2P07951 284 aa17.94■□□□□ 0.46
HDAC1-206ENST00000476391 RPRD2Q5VT52 1461 aaKnown RBP17.94■□□□□ 0.46
HDAC1-206ENST00000476391 ROCK2O75116 1388 aaKnown RBP17.94■□□□□ 0.46
HDAC1-206ENST00000476391 IGF1RP08069 1367 aa17.94■□□□□ 0.46
HDAC1-206ENST00000476391 CRBNQ96SW2 442 aa17.93■□□□□ 0.46
HDAC1-206ENST00000476391 FGD5Q6ZNL6 1462 aa17.93■□□□□ 0.46
HDAC1-206ENST00000476391 SENP3-EIF4A1A0A087X0R7 540 aa17.92■□□□□ 0.46
HDAC1-206ENST00000476391 VIRMAQ69YN4 1812 aaKnown RBP17.91■□□□□ 0.46
HDAC1-206ENST00000476391 ATP1B4Q9UN42 357 aaPredicted RBP17.91■□□□□ 0.46
HDAC1-206ENST00000476391 RBM10P98175 930 aaKnown RBP17.91■□□□□ 0.46
HDAC1-206ENST00000476391 EFCAB5A4FU69 1503 aa17.9■□□□□ 0.46
HDAC1-206ENST00000476391 KIF15Q9NS87 1388 aa17.9■□□□□ 0.46
HDAC1-206ENST00000476391 MPHOSPH9Q99550 1183 aa17.89■□□□□ 0.45
HDAC1-206ENST00000476391 BCORL1Q5H9F3 1711 aa17.89■□□□□ 0.45
HDAC1-206ENST00000476391 MYBBP1AQ9BQG0 1328 aaKnown RBP17.89■□□□□ 0.45
HDAC1-206ENST00000476391 BECN1Q14457 450 aa17.89■□□□□ 0.45
HDAC1-206ENST00000476391 CARMIL1Q5VZK9 1371 aa17.88■□□□□ 0.45
HDAC1-206ENST00000476391 PRDM4Q9UKN5 801 aa17.88■□□□□ 0.45
HDAC1-206ENST00000476391 AAMPQ13685 434 aa17.88■□□□□ 0.45
HDAC1-206ENST00000476391 RALBP1Q15311 655 aa17.87■□□□□ 0.45
HDAC1-206ENST00000476391 MTUS2Q5JR59 1369 aa17.86■□□□□ 0.45
HDAC1-206ENST00000476391 PLIN1O60240 522 aa17.86■□□□□ 0.45
HDAC1-206ENST00000476391 ESPNB1AK53 854 aa17.85■□□□□ 0.45
HDAC1-206ENST00000476391 CNGB1Q14028 1251 aaPredicted RBP17.85■□□□□ 0.45
HDAC1-206ENST00000476391 ANKRD30BQ9BXX2 1392 aa17.85■□□□□ 0.45
HDAC1-206ENST00000476391 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
HDAC1-206ENST00000476391 MRE11P49959 708 aa17.84■□□□□ 0.45
HDAC1-206ENST00000476391 FHOD3Q2V2M9 1422 aa17.84■□□□□ 0.45
HDAC1-206ENST00000476391 INSRP06213 1382 aa17.83■□□□□ 0.45
HDAC1-206ENST00000476391 HMGXB3Q12766 1538 aa17.83■□□□□ 0.45
HDAC1-206ENST00000476391 PANK2Q9BZ23 570 aa17.83■□□□□ 0.44
HDAC1-206ENST00000476391 ANTXR1Q9H6X2 564 aa17.82■□□□□ 0.44
HDAC1-206ENST00000476391 ISY1Q9ULR0 285 aaKnown RBP17.82■□□□□ 0.44
HDAC1-206ENST00000476391 FGD1P98174 961 aa17.82■□□□□ 0.44
HDAC1-206ENST00000476391 SUPT6HQ7KZ85 1726 aaKnown RBP17.82■□□□□ 0.44
HDAC1-206ENST00000476391 ZMYM4Q5VZL5 1548 aa17.82■□□□□ 0.44
HDAC1-206ENST00000476391 USP47Q96K76 1375 aa17.81■□□□□ 0.44
HDAC1-206ENST00000476391 USP19O94966 1318 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 P3H3Q8IVL6 736 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 MYH16Q9H6N6 1097 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 RRP7BPQ9NSQ0 103 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 KDM6BO15054 1643 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 CDCA7LQ96GN5 454 aa17.8■□□□□ 0.44
HDAC1-206ENST00000476391 PLEKHH2Q8IVE3 1493 aa17.79■□□□□ 0.44
HDAC1-206ENST00000476391 A0A0U1RQG5 324 aaPredicted RBP17.79■□□□□ 0.44
HDAC1-206ENST00000476391 KDM5CP41229 1560 aa17.79■□□□□ 0.44
HDAC1-206ENST00000476391 TCOF1Q13428 1488 aaKnown RBP17.78■□□□□ 0.44
HDAC1-206ENST00000476391 POLR3GLQ9BT43 218 aa17.78■□□□□ 0.44
HDAC1-206ENST00000476391 SLKQ9H2G2 1235 aaPredicted RBP17.78■□□□□ 0.44
HDAC1-206ENST00000476391 SNAPC4Q5SXM2 1469 aa17.77■□□□□ 0.44
HDAC1-206ENST00000476391 THOC2Q8NI27 1593 aaKnown RBP17.77■□□□□ 0.44
HDAC1-206ENST00000476391 NLRP13Q86W25 1043 aa17.77■□□□□ 0.43
HDAC1-206ENST00000476391 MAP7D2Q96T17 732 aa17.77■□□□□ 0.43
HDAC1-206ENST00000476391 MBD5Q9P267 1494 aa17.76■□□□□ 0.43
HDAC1-206ENST00000476391 EHBP1L1Q8N3D4 1523 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms