RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 NISCHQ9Y2I1 1504 aa24.96■■□□□ 1.59
HDAC1-206ENST00000476391 PELP1Q8IZL8 1130 aaKnown RBP23.62■■□□□ 1.37
HDAC1-206ENST00000476391 HRCP23327 699 aa23.58■■□□□ 1.37
HDAC1-206ENST00000476391 MYT1Q01538 1121 aa22.93■■□□□ 1.26
HDAC1-206ENST00000476391 PPARGC1BQ86YN6 1023 aaKnown RBP22.81■■□□□ 1.24
HDAC1-206ENST00000476391 PCGF6Q9BYE7 350 aa22.71■■□□□ 1.23
HDAC1-206ENST00000476391 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
HDAC1-206ENST00000476391 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
HDAC1-206ENST00000476391 DCAF1Q9Y4B6 1507 aa22.32■■□□□ 1.16
HDAC1-206ENST00000476391 SUPT5HO00267 1087 aaKnown RBP22.23■■□□□ 1.15
HDAC1-206ENST00000476391 CHIC1Q5VXU3 224 aa22.2■■□□□ 1.14
HDAC1-206ENST00000476391 ZEB1P37275 1124 aaPredicted RBP22.15■■□□□ 1.14
HDAC1-206ENST00000476391 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.13
HDAC1-206ENST00000476391 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
HDAC1-206ENST00000476391 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
HDAC1-206ENST00000476391 ACIN1Q9UKV3 1341 aaKnown RBP21.86■■□□□ 1.09
HDAC1-206ENST00000476391 TTBK1Q5TCY1 1321 aaPredicted RBP21.7■■□□□ 1.06
HDAC1-206ENST00000476391 NEUROD1Q13562 356 aa21.67■■□□□ 1.06
HDAC1-206ENST00000476391 GTF3C3Q9Y5Q9 886 aa21.61■■□□□ 1.05
HDAC1-206ENST00000476391 LOC105371045A0A1W2PR82 267 aa21.58■■□□□ 1.04
HDAC1-206ENST00000476391 CENPBP07199 599 aaPredicted RBP21.57■■□□□ 1.04
HDAC1-206ENST00000476391 ZCCHC6Q5VYS8 1495 aaKnown RBP21.35■■□□□ 1.01
HDAC1-206ENST00000476391 DIEXFQ68CQ4 756 aaKnown RBP21.2■□□□□ 0.99
HDAC1-206ENST00000476391 BCL11AQ9H165 835 aa21.07■□□□□ 0.96
HDAC1-206ENST00000476391 CCER1Q8TC90 406 aaPredicted RBP20.93■□□□□ 0.94
HDAC1-206ENST00000476391 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
HDAC1-206ENST00000476391 ANP32EQ9BTT0 268 aa20.88■□□□□ 0.93
HDAC1-206ENST00000476391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
HDAC1-206ENST00000476391 FAM9AQ8IZU1 332 aaPredicted RBP20.85■□□□□ 0.93
HDAC1-206ENST00000476391 CLSPNQ9HAW4 1339 aa20.76■□□□□ 0.91
HDAC1-206ENST00000476391 ZNF316A6NFI3 1004 aaPredicted RBP20.74■□□□□ 0.91
HDAC1-206ENST00000476391 YTHDC1Q96MU7 727 aaKnown RBP20.72■□□□□ 0.91
HDAC1-206ENST00000476391 MIER1Q8N108 512 aa20.56■□□□□ 0.88
HDAC1-206ENST00000476391 CSRNP3Q8WYN3 585 aa20.55■□□□□ 0.88
HDAC1-206ENST00000476391 TSHZ2Q9NRE2 1034 aa20.54■□□□□ 0.88
HDAC1-206ENST00000476391 PRKCSHP14314 528 aaPredicted RBP20.53■□□□□ 0.88
HDAC1-206ENST00000476391 SUPT16HQ9Y5B9 1047 aaKnown RBP20.52■□□□□ 0.88
HDAC1-206ENST00000476391 ABCC9O60706 1549 aa20.38■□□□□ 0.85
HDAC1-206ENST00000476391 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.85
HDAC1-206ENST00000476391 ERICH6Q7L0X2 663 aa20.32■□□□□ 0.84
HDAC1-206ENST00000476391 WRNQ14191 1432 aaPredicted RBP eCLIP20.29■□□□□ 0.84
HDAC1-206ENST00000476391 EHMT2Q96KQ7 1210 aa20.25■□□□□ 0.83
HDAC1-206ENST00000476391 RB1CC1Q8TDY2 1594 aa20.2■□□□□ 0.82
HDAC1-206ENST00000476391 RSF1Q96T23 1441 aaPredicted RBP20.2■□□□□ 0.82
HDAC1-206ENST00000476391 RBM19Q9Y4C8 960 aaKnown RBP20.03■□□□□ 0.8
HDAC1-206ENST00000476391 APLP2Q06481 763 aa20.02■□□□□ 0.79
HDAC1-206ENST00000476391 MYT1LQ9UL68 1186 aa19.96■□□□□ 0.79
HDAC1-206ENST00000476391 CEP162Q5TB80 1403 aa19.94■□□□□ 0.78
HDAC1-206ENST00000476391 MSH5O43196 834 aa19.85■□□□□ 0.77
HDAC1-206ENST00000476391 TNIKQ9UKE5 1360 aa19.84■□□□□ 0.77
HDAC1-206ENST00000476391 FANCIQ9NVI1 1328 aa19.82■□□□□ 0.76
HDAC1-206ENST00000476391 FKBP8Q14318 412 aa19.82■□□□□ 0.76
HDAC1-206ENST00000476391 BCANQ96GW7 911 aa19.82■□□□□ 0.76
HDAC1-206ENST00000476391 HNRNPUL2Q1KMD3 747 aaKnown RBP19.74■□□□□ 0.75
HDAC1-206ENST00000476391 NEFLP07196 543 aa19.73■□□□□ 0.75
HDAC1-206ENST00000476391 EIF4G1Q04637 1599 aaKnown RBP19.69■□□□□ 0.74
HDAC1-206ENST00000476391 DEKP35659 375 aaKnown RBP19.66■□□□□ 0.74
HDAC1-206ENST00000476391 ERICH6BQ5W0A0 696 aa19.65■□□□□ 0.74
HDAC1-206ENST00000476391 ANO8Q9HCE9 1232 aaPredicted RBP19.63■□□□□ 0.73
HDAC1-206ENST00000476391 EEA1Q15075 1411 aa19.6■□□□□ 0.73
HDAC1-206ENST00000476391 DHX57Q6P158 1386 aaKnown RBP19.58■□□□□ 0.73
HDAC1-206ENST00000476391 KCNH8Q96L42 1107 aa19.57■□□□□ 0.72
HDAC1-206ENST00000476391 SCRIBQ14160 1630 aa19.57■□□□□ 0.72
HDAC1-206ENST00000476391 ITGAEP38570 1179 aa19.55■□□□□ 0.72
HDAC1-206ENST00000476391 CCDC88BA6NC98 1476 aa19.52■□□□□ 0.71
HDAC1-206ENST00000476391 CDK11AQ9UQ88 783 aaPredicted RBP19.51■□□□□ 0.71
HDAC1-206ENST00000476391 GOLGA3Q08378 1498 aa19.51■□□□□ 0.71
HDAC1-206ENST00000476391 ABCC8Q09428 1581 aa19.5■□□□□ 0.71
HDAC1-206ENST00000476391 UBTFP17480 764 aaKnown RBP19.49■□□□□ 0.71
HDAC1-206ENST00000476391 SOGA1O94964 1423 aa19.45■□□□□ 0.7
HDAC1-206ENST00000476391 MROH2BQ7Z745 1585 aa19.45■□□□□ 0.7
HDAC1-206ENST00000476391 WIZO95785 1651 aa19.43■□□□□ 0.7
HDAC1-206ENST00000476391 UBE2Q2Q8WVN8 375 aa19.43■□□□□ 0.7
HDAC1-206ENST00000476391 BAZ1AQ9NRL2 1556 aaPredicted RBP19.43■□□□□ 0.7
HDAC1-206ENST00000476391 SALL2Q9Y467 1007 aaPredicted RBP19.42■□□□□ 0.7
HDAC1-206ENST00000476391 VPS8Q8N3P4 1428 aa19.41■□□□□ 0.7
HDAC1-206ENST00000476391 CCER2I3L3R5 266 aa19.39■□□□□ 0.69
HDAC1-206ENST00000476391 CECR2Q9BXF3 1484 aa19.38■□□□□ 0.69
HDAC1-206ENST00000476391 CLIP1P30622 1438 aa19.36■□□□□ 0.69
HDAC1-206ENST00000476391 NACADO15069 1562 aa19.34■□□□□ 0.69
HDAC1-206ENST00000476391 NOP58Q9Y2X3 529 aaKnown RBP19.3■□□□□ 0.68
HDAC1-206ENST00000476391 TRIM52Q96A61 297 aa19.29■□□□□ 0.68
HDAC1-206ENST00000476391 RUSC2Q8N2Y8 1516 aa19.29■□□□□ 0.68
HDAC1-206ENST00000476391 CUX2O14529 1486 aa19.28■□□□□ 0.68
HDAC1-206ENST00000476391 KIF21BO75037 1637 aa19.28■□□□□ 0.68
HDAC1-206ENST00000476391 CEP164Q9UPV0 1460 aa19.27■□□□□ 0.68
HDAC1-206ENST00000476391 DDX10Q13206 875 aaKnown RBP19.25■□□□□ 0.67
HDAC1-206ENST00000476391 PPP1R15AO75807 674 aaPredicted RBP19.24■□□□□ 0.67
HDAC1-206ENST00000476391 NBR1Q14596 966 aa19.22■□□□□ 0.67
HDAC1-206ENST00000476391 CCDC136Q96JN2 1154 aa19.21■□□□□ 0.67
HDAC1-206ENST00000476391 ANP32CO43423 234 aa19.2■□□□□ 0.66
HDAC1-206ENST00000476391 BAZ1BQ9UIG0 1483 aaKnown RBP19.19■□□□□ 0.66
HDAC1-206ENST00000476391 PPP4R2Q9NY27 417 aa19.19■□□□□ 0.66
HDAC1-206ENST00000476391 RTL5Q5HYW3 569 aaPredicted RBP19.17■□□□□ 0.66
HDAC1-206ENST00000476391 RRBP1Q9P2E9 1410 aaKnown RBP19.15■□□□□ 0.66
HDAC1-206ENST00000476391 IL27Q8NEV9 243 aa19.14■□□□□ 0.66
HDAC1-206ENST00000476391 TOP2AP11388 1531 aaKnown RBP19.13■□□□□ 0.65
HDAC1-206ENST00000476391 PAK3O75914 559 aaPredicted RBP19.12■□□□□ 0.65
HDAC1-206ENST00000476391 MAPKBP1O60336 1514 aa19.1■□□□□ 0.65
HDAC1-206ENST00000476391 WDR97A6NE52 1622 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms