RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 LAS1LQ9Y4W2 734 aaKnown RBP19.11■□□□□ 0.65
PTPRU-205ENST00000460170 MS4A1P11836 297 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 RSPH4AQ5TD94 716 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 MORC1Q86VD1 984 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 JPH4Q96JJ6 628 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 TSHZ2Q9NRE2 1034 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 RCAN3Q9UKA8 241 aa19.1■□□□□ 0.65
PTPRU-205ENST00000460170 ARID4BQ4LE39 1312 aaPredicted RBP19.09■□□□□ 0.65
PTPRU-205ENST00000460170 NCAPD3P42695 1498 aa19.07■□□□□ 0.64
PTPRU-205ENST00000460170 ZBTB7CA1YPR0 619 aa19.07■□□□□ 0.64
PTPRU-205ENST00000460170 GGT6Q6P531 493 aa19.07■□□□□ 0.64
PTPRU-205ENST00000460170 PNNQ9H307 717 aaKnown RBP19.06■□□□□ 0.64
PTPRU-205ENST00000460170 GOLGA6L22H0YM25 854 aa19.04■□□□□ 0.64
PTPRU-205ENST00000460170 SRPK2P78362 688 aaKnown RBP19.04■□□□□ 0.64
PTPRU-205ENST00000460170 CHMP4BQ9H444 224 aaKnown RBP19.04■□□□□ 0.64
PTPRU-205ENST00000460170 NLRP13Q86W25 1043 aa19.04■□□□□ 0.64
PTPRU-205ENST00000460170 PLEKHG5O94827 1062 aa19.03■□□□□ 0.64
PTPRU-205ENST00000460170 PHLDB1Q86UU1 1377 aa19.01■□□□□ 0.63
PTPRU-205ENST00000460170 RAD54L2Q9Y4B4 1467 aa19.01■□□□□ 0.63
PTPRU-205ENST00000460170 SAFB2Q14151 953 aaKnown RBP eCLIP19.01■□□□□ 0.63
PTPRU-205ENST00000460170 PRKRIP1Q9H875 184 aaPredicted RBP19■□□□□ 0.63
PTPRU-205ENST00000460170 FGD6Q6ZV73 1430 aa19■□□□□ 0.63
PTPRU-205ENST00000460170 GAPVD1Q14C86 1478 aa19■□□□□ 0.63
PTPRU-205ENST00000460170 CASC1Q6TDU7 716 aa18.99■□□□□ 0.63
PTPRU-205ENST00000460170 LRRC9Q6ZRR7 1453 aa18.99■□□□□ 0.63
PTPRU-205ENST00000460170 ST20-MTHFSA0A0A6YYL1 179 aa18.98■□□□□ 0.63
PTPRU-205ENST00000460170 SYNJ1O43426 1573 aa18.98■□□□□ 0.63
PTPRU-205ENST00000460170 KIF3BO15066 747 aa18.98■□□□□ 0.63
PTPRU-205ENST00000460170 ERICH3Q5RHP9 1530 aa18.98■□□□□ 0.63
PTPRU-205ENST00000460170 PDE3BQ13370 1112 aa18.97■□□□□ 0.63
PTPRU-205ENST00000460170 SPAG9O60271 1321 aaKnown RBP18.96■□□□□ 0.63
PTPRU-205ENST00000460170 TCERG1O14776 1098 aaKnown RBP18.96■□□□□ 0.63
PTPRU-205ENST00000460170 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
PTPRU-205ENST00000460170 EIF3AQ14152 1382 aaKnown RBP18.95■□□□□ 0.62
PTPRU-205ENST00000460170 KIF15Q9NS87 1388 aa18.95■□□□□ 0.62
PTPRU-205ENST00000460170 MYOM3Q5VTT5 1437 aa18.95■□□□□ 0.62
PTPRU-205ENST00000460170 TRIM44Q96DX7 344 aaPredicted RBP18.95■□□□□ 0.62
PTPRU-205ENST00000460170 NCLP19338 710 aaKnown RBP18.95■□□□□ 0.62
PTPRU-205ENST00000460170 STK26Q9P289 416 aa18.95■□□□□ 0.62
PTPRU-205ENST00000460170 CCDC144AA2RUR9 1427 aa18.93■□□□□ 0.62
PTPRU-205ENST00000460170 UACAQ9BZF9 1416 aa18.93■□□□□ 0.62
PTPRU-205ENST00000460170 MYBBP1AQ9BQG0 1328 aaKnown RBP18.93■□□□□ 0.62
PTPRU-205ENST00000460170 HDGFP51858 240 aaKnown RBP18.92■□□□□ 0.62
PTPRU-205ENST00000460170 U2AF1L5P0DN76 240 aaPredicted RBP18.92■□□□□ 0.62
PTPRU-205ENST00000460170 U2AF1Q01081 240 aaKnown RBP eCLIP18.92■□□□□ 0.62
PTPRU-205ENST00000460170 RRBP1Q9P2E9 1410 aaKnown RBP18.91■□□□□ 0.62
PTPRU-205ENST00000460170 GOLGA2Q08379 1002 aa18.91■□□□□ 0.62
PTPRU-205ENST00000460170 USP47Q96K76 1375 aa18.91■□□□□ 0.62
PTPRU-205ENST00000460170 MLECQ14165 292 aa18.91■□□□□ 0.62
PTPRU-205ENST00000460170 HDGFL2Q7Z4V5 671 aaPredicted RBP18.91■□□□□ 0.62
PTPRU-205ENST00000460170 CASKIN1Q8WXD9 1431 aa18.9■□□□□ 0.62
PTPRU-205ENST00000460170 CUX1P39880 1505 aa18.9■□□□□ 0.62
PTPRU-205ENST00000460170 CFTRP13569 1480 aa18.9■□□□□ 0.62
PTPRU-205ENST00000460170 ZBED9Q6R2W3 1325 aa18.89■□□□□ 0.61
PTPRU-205ENST00000460170 PRXQ9BXM0 1461 aa18.89■□□□□ 0.61
PTPRU-205ENST00000460170 GLIPR1L2Q4G1C9 344 aa18.88■□□□□ 0.61
PTPRU-205ENST00000460170 PTPRGP23470 1445 aa18.88■□□□□ 0.61
PTPRU-205ENST00000460170 HSP90AB1P08238 724 aaKnown RBP18.86■□□□□ 0.61
PTPRU-205ENST00000460170 IPO8O15397 1037 aaKnown RBP18.86■□□□□ 0.61
PTPRU-205ENST00000460170 PANK3Q9H999 370 aa18.86■□□□□ 0.61
PTPRU-205ENST00000460170 DEKP35659 375 aaKnown RBP18.85■□□□□ 0.61
PTPRU-205ENST00000460170 HAP1P54257 671 aaPredicted RBP18.84■□□□□ 0.61
PTPRU-205ENST00000460170 ZNF644Q9H582 1327 aaPredicted RBP18.84■□□□□ 0.61
PTPRU-205ENST00000460170 NCOA2Q15596 1464 aa18.83■□□□□ 0.61
PTPRU-205ENST00000460170 HSCBQ8IWL3 235 aa18.83■□□□□ 0.6
PTPRU-205ENST00000460170 RWDD1Q9H446 243 aaPredicted RBP18.82■□□□□ 0.6
PTPRU-205ENST00000460170 CCDC146Q8IYE0 955 aa18.82■□□□□ 0.6
PTPRU-205ENST00000460170 LMOD2Q6P5Q4 547 aa18.82■□□□□ 0.6
PTPRU-205ENST00000460170 TOP2BQ02880 1626 aa18.82■□□□□ 0.6
PTPRU-205ENST00000460170 SOX12O15370 315 aa18.82■□□□□ 0.6
PTPRU-205ENST00000460170 FYCO1Q9BQS8 1478 aa18.81■□□□□ 0.6
PTPRU-205ENST00000460170 IPO9Q96P70 1041 aaKnown RBP18.8■□□□□ 0.6
PTPRU-205ENST00000460170 CCDC7Q96M83 1385 aa18.8■□□□□ 0.6
PTPRU-205ENST00000460170 A0A0G2JS52 829 aa18.8■□□□□ 0.6
PTPRU-205ENST00000460170 WASHC2CQ9Y4E1 1318 aa18.8■□□□□ 0.6
PTPRU-205ENST00000460170 CALD1Q05682 793 aaKnown RBP18.79■□□□□ 0.6
PTPRU-205ENST00000460170 TERF2IPQ9NYB0 399 aa18.78■□□□□ 0.6
PTPRU-205ENST00000460170 KIF7Q2M1P5 1343 aa18.78■□□□□ 0.6
PTPRU-205ENST00000460170 ITPRIPQ8IWB1 547 aa18.77■□□□□ 0.6
PTPRU-205ENST00000460170 PMFBP1Q8TBY8 1022 aa18.77■□□□□ 0.6
PTPRU-205ENST00000460170 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.65e-6■■■■□ 20.5
PTPRU-205ENST00000460170 TRAK1Q9UPV9 953 aa18.76■□□□□ 0.59
PTPRU-205ENST00000460170 CENPJQ9HC77 1338 aaPredicted RBP18.76■□□□□ 0.59
PTPRU-205ENST00000460170 RTN4Q9NQC3 1192 aaKnown RBP18.76■□□□□ 0.59
PTPRU-205ENST00000460170 OS9Q13438 667 aaPredicted RBP18.75■□□□□ 0.59
PTPRU-205ENST00000460170 RTF1Q92541 710 aaKnown RBP18.75■□□□□ 0.59
PTPRU-205ENST00000460170 CFAP44Q96MT7 982 aa18.74■□□□□ 0.59
PTPRU-205ENST00000460170 PTMAP06454 111 aaKnown RBP18.74■□□□□ 0.59
PTPRU-205ENST00000460170 RRP1P56182 461 aaKnown RBP18.74■□□□□ 0.59
PTPRU-205ENST00000460170 SMC4Q9NTJ3 1288 aa18.74■□□□□ 0.59
PTPRU-205ENST00000460170 NUTM2DQ5VT03 806 aaPredicted RBP18.73■□□□□ 0.59
PTPRU-205ENST00000460170 CNTLNQ9NXG0 1405 aa18.73■□□□□ 0.59
PTPRU-205ENST00000460170 WASHC2AQ641Q2 1341 aa18.73■□□□□ 0.59
PTPRU-205ENST00000460170 SPRYD3Q8NCJ5 442 aa18.73■□□□□ 0.59
PTPRU-205ENST00000460170 CLUAP1Q96AJ1 413 aa18.72■□□□□ 0.59
PTPRU-205ENST00000460170 ANKRD50Q9ULJ7 1429 aa18.71■□□□□ 0.59
PTPRU-205ENST00000460170 HMGXB3Q12766 1538 aa18.71■□□□□ 0.59
PTPRU-205ENST00000460170 EXOC6Q8TAG9 804 aa18.71■□□□□ 0.59
PTPRU-205ENST00000460170 EFCAB5A4FU69 1503 aa18.7■□□□□ 0.58
PTPRU-205ENST00000460170 TPRNQ4KMQ1 711 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms